Wall clock time and date at job start Tue Mar 31 2020 20:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50705 * 119.99729 * 2 1 4 4 H 1.09001 * 109.46813 * 0.02562 * 3 2 1 5 5 C 1.53001 * 109.47188 * 240.00295 * 3 2 1 6 6 C 1.52994 * 109.47013 * 65.00023 * 5 3 2 7 7 C 1.53001 * 109.47058 * 120.00020 * 3 2 1 8 8 C 1.50694 * 109.47168 * 295.00216 * 7 3 2 9 9 O 1.21283 * 120.00363 * 359.97438 * 8 7 3 10 10 N 1.34784 * 119.99988 * 179.97438 * 8 7 3 11 11 C 1.46493 * 119.99864 * 179.72721 * 10 8 7 12 12 C 1.53117 * 109.52115 * 274.67994 * 11 10 8 13 13 C 1.53044 * 109.27817 * 182.44058 * 12 11 10 14 14 N 1.46848 * 109.51961 * 59.18342 * 13 12 11 15 15 C 1.46901 * 111.00051 * 174.15952 * 14 13 12 16 16 C 1.50700 * 109.46966 * 294.20927 * 15 14 13 17 17 O 1.21290 * 120.00162 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00098 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00398 * 179.97438 * 18 16 15 20 20 H 1.08008 * 120.00024 * 0.02562 * 19 18 16 21 21 C 1.38956 * 120.00218 * 180.02562 * 19 18 16 22 22 N 1.31406 * 120.00041 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99756 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47597 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47014 * 120.00194 * 23 21 19 26 26 H 1.48498 * 109.47385 * 239.99793 * 23 21 19 27 27 C 1.46843 * 111.19917 * 298.25590 * 14 13 12 28 28 C 1.53032 * 109.52375 * 61.74115 * 27 14 13 29 29 H 1.07999 * 119.99449 * 179.97438 * 1 2 3 30 30 H 1.07995 * 120.00312 * 359.97438 * 1 2 3 31 31 H 1.07995 * 120.00312 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.46708 * 184.99656 * 5 3 2 33 33 H 1.08997 * 109.47065 * 304.99904 * 5 3 2 34 34 H 1.09001 * 109.47235 * 179.97438 * 6 5 3 35 35 H 1.08996 * 109.47284 * 299.99647 * 6 5 3 36 36 H 1.09005 * 109.47200 * 60.00337 * 6 5 3 37 37 H 1.08998 * 109.46837 * 175.00237 * 7 3 2 38 38 H 1.09002 * 109.46926 * 55.00041 * 7 3 2 39 39 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 40 40 H 1.08998 * 109.52775 * 34.87222 * 11 10 8 41 41 H 1.08999 * 109.50765 * 302.38461 * 12 11 10 42 42 H 1.08997 * 109.50698 * 62.50461 * 12 11 10 43 43 H 1.08990 * 109.46368 * 299.16506 * 13 12 11 44 44 H 1.09004 * 109.45102 * 179.18675 * 13 12 11 45 45 H 1.09003 * 109.47079 * 54.20062 * 15 14 13 46 46 H 1.08998 * 109.47479 * 174.20835 * 15 14 13 47 47 H 0.97006 * 120.00049 * 0.02562 * 18 16 15 48 48 H 0.96994 * 120.00093 * 179.97438 * 22 21 19 49 49 H 1.09007 * 109.46353 * 301.73035 * 27 14 13 50 50 H 1.08996 * 109.45613 * 181.75892 * 27 14 13 51 51 H 1.09003 * 109.50256 * 180.88210 * 28 27 14 52 52 H 1.08999 * 109.50411 * 60.76825 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9430 1.3863 -1.2493 6 6 2.0563 1.4309 -2.4953 7 6 2.9431 1.3863 1.2492 8 6 2.0698 1.4300 2.4765 9 8 0.8626 1.3999 2.3633 10 7 2.6302 1.5027 3.7002 11 6 1.7811 1.5513 4.8930 12 6 1.3657 2.9994 5.1667 13 6 0.5297 3.0518 6.4475 14 7 1.3190 2.5296 7.5703 15 6 0.5993 2.6924 8.8406 16 6 0.4525 4.1599 9.1503 17 8 0.9036 4.9886 8.3881 18 7 -0.1799 4.5515 10.2741 19 6 -0.3130 5.8865 10.5562 20 1 0.0887 6.6245 9.8775 21 6 -0.9646 6.2902 11.7152 22 7 -1.4528 5.3923 12.5412 23 14 -1.1464 8.1092 12.0990 24 1 -0.5158 8.9088 11.0182 25 1 -2.5880 8.4537 12.1923 26 1 -0.4808 8.4114 13.3916 27 6 1.6893 1.1256 7.3515 28 6 2.5598 1.0157 6.0977 29 1 -0.5399 -0.9353 -0.0004 30 1 -0.5400 0.9352 0.0004 31 1 1.8500 -0.9352 -0.0004 32 1 3.5538 2.2881 -1.2056 33 1 3.5905 0.5107 -1.2952 34 1 2.6829 1.4891 -3.3853 35 1 1.4455 0.5292 -2.5390 36 1 1.4088 2.3066 -2.4493 37 1 3.5539 2.2880 1.2056 38 1 3.5906 0.5106 1.2951 39 1 3.5956 1.5272 3.7907 40 1 0.8926 0.9406 4.7328 41 1 2.2558 3.6168 5.2876 42 1 0.7742 3.3726 4.3307 43 1 -0.3671 2.4454 6.3210 44 1 0.2445 4.0836 6.6529 45 1 -0.3881 2.2377 8.7596 46 1 1.1586 2.2065 9.6400 47 1 -0.5403 3.8887 10.8839 48 1 -1.9073 5.6741 13.3504 49 1 0.7870 0.5281 7.2207 50 1 2.2461 0.7584 8.2136 51 1 2.8215 -0.0286 5.9267 52 1 3.4688 1.6017 6.2332 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228809037.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:43 Heat of formation + Delta-G solvation = -67.322613 kcal Electronic energy + Delta-G solvation = -29175.095775 eV Core-core repulsion = 25174.244330 eV Total energy + Delta-G solvation = -4000.851446 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.25535 -39.02476 -37.72302 -36.82685 -34.87732 -33.83194 -32.04360 -31.90432 -31.19617 -30.69603 -30.24647 -27.16489 -25.22436 -24.27007 -23.09187 -22.51007 -21.88330 -20.54120 -19.90834 -19.62918 -19.16481 -17.83739 -17.12218 -16.44523 -15.91691 -15.77936 -15.33456 -14.98867 -14.85858 -14.77336 -14.54169 -14.23823 -13.98420 -13.81877 -13.71537 -13.47641 -13.33301 -13.03431 -13.01468 -12.44664 -12.29662 -12.15665 -11.87028 -11.67431 -11.58037 -11.48868 -11.47341 -11.15904 -11.10079 -11.06484 -11.04692 -10.74523 -10.60552 -10.47249 -10.32735 -10.20724 -9.91703 -9.47767 -9.29576 -9.01008 -8.40584 -7.95587 -7.81259 -6.40061 -3.80584 2.27437 2.60533 3.06163 3.17439 3.27923 3.35148 3.92550 4.01146 4.26366 4.43339 4.47707 4.54639 4.70916 4.92766 4.94770 4.97564 5.07800 5.08734 5.10504 5.16345 5.20765 5.27294 5.37527 5.40577 5.47425 5.54385 5.60497 5.61336 5.66214 5.68945 5.72251 5.80923 5.83651 5.86726 5.92891 6.00692 6.02302 6.04223 6.15201 6.29428 6.36190 6.51951 6.56508 6.59077 6.76973 7.31431 7.43154 7.46277 7.57179 8.08800 8.18410 8.64011 9.20264 9.56838 10.08736 10.77833 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022626 B = 0.001830 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.195192 B =15293.340759 C =15824.234527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.154 4.154 3 C -0.045 4.045 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.135 4.135 8 C 0.510 3.490 9 O -0.530 6.530 10 N -0.729 5.729 11 C 0.144 3.856 12 C -0.119 4.119 13 C 0.055 3.945 14 N -0.516 5.516 15 C 0.046 3.954 16 C 0.444 3.556 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.058 3.942 28 C -0.120 4.120 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.398 0.602 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.023 0.977 44 H 0.106 0.894 45 H 0.047 0.953 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.270 0.730 49 H 0.031 0.969 50 H 0.078 0.922 51 H 0.068 0.932 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.608 -13.993 -22.052 27.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.172 4.172 3 C -0.063 4.063 4 H 0.100 0.900 5 C -0.154 4.154 6 C -0.209 4.209 7 C -0.175 4.175 8 C 0.296 3.704 9 O -0.406 6.406 10 N -0.380 5.380 11 C 0.040 3.960 12 C -0.158 4.158 13 C -0.073 4.073 14 N -0.241 5.241 15 C -0.085 4.085 16 C 0.230 3.770 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.071 4.071 28 C -0.158 4.158 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.231 0.769 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.041 0.959 44 H 0.124 0.876 45 H 0.065 0.935 46 H 0.107 0.893 47 H 0.225 0.775 48 H 0.080 0.920 49 H 0.049 0.951 50 H 0.096 0.904 51 H 0.087 0.913 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.352 -13.154 -22.450 27.650 hybrid contribution -0.608 -0.091 0.890 1.082 sum 8.745 -13.246 -21.560 26.772 Atomic orbital electron populations 1.23710 0.95951 1.01351 0.98892 1.22603 0.95962 0.96974 1.01615 1.20158 0.96591 0.97147 0.92443 0.90015 1.21540 0.97853 1.01904 0.94058 1.21760 0.99843 1.02191 0.97089 1.21725 0.98727 1.04213 0.92848 1.20666 0.89296 0.75872 0.84586 1.90721 1.14759 1.48633 1.86510 1.46155 1.10208 1.75654 1.05953 1.21074 0.93898 0.97583 0.83469 1.21899 1.01040 0.95676 0.97137 1.22214 0.93062 1.02861 0.89132 1.61542 1.44314 1.16499 1.01699 1.21834 0.97283 0.97016 0.92388 1.19750 0.84001 0.89385 0.83900 1.90482 1.52460 1.53715 1.49436 1.41877 1.49985 1.08401 1.19922 1.19748 1.33979 0.83058 1.05914 0.87870 1.25255 0.96875 1.00038 0.95832 1.69616 1.38282 1.33751 1.12712 0.85809 0.77886 0.82283 0.78412 1.19238 1.20811 1.20777 1.22026 0.98132 0.89365 0.97557 1.21823 0.99555 1.00840 0.93570 0.89286 0.88575 0.88226 0.91802 0.91905 0.92934 0.92410 0.92752 0.88812 0.89037 0.76877 0.89939 0.90838 0.91531 0.95910 0.87602 0.93483 0.89333 0.77512 0.91965 0.95054 0.90359 0.91310 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 13.22 29.01 0.38 -1.21 16 2 C -0.15 -1.35 6.76 -36.02 -0.24 -1.60 16 3 C -0.04 -0.35 1.82 -91.77 -0.17 -0.52 16 4 H 0.08 0.80 7.60 -51.93 -0.39 0.41 16 5 C -0.12 -0.70 5.39 -26.73 -0.14 -0.85 16 6 C -0.15 -0.95 9.73 37.15 0.36 -0.59 16 7 C -0.14 -0.95 5.16 -27.89 -0.14 -1.10 16 8 C 0.51 5.41 7.55 -10.98 -0.08 5.33 16 9 O -0.53 -7.64 13.83 5.56 0.08 -7.57 16 10 N -0.73 -6.92 5.08 -53.69 -0.27 -7.19 16 11 C 0.14 1.70 2.53 -67.81 -0.17 1.53 16 12 C -0.12 -1.72 5.67 -26.65 -0.15 -1.87 16 13 C 0.06 0.94 5.11 -3.83 -0.02 0.92 16 14 N -0.52 -8.55 4.40 -236.11 -1.04 -9.59 16 15 C 0.05 0.83 5.45 -4.98 -0.03 0.80 16 16 C 0.44 10.49 7.46 -10.99 -0.08 10.41 16 17 O -0.58 -15.47 13.90 5.55 0.08 -15.39 16 18 N -0.57 -14.35 5.29 -10.96 -0.06 -14.41 16 19 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 20 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 23 Si 0.93 21.17 29.55 -169.99 -5.02 16.14 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 C 0.06 0.73 5.46 -3.84 -0.02 0.71 16 28 C -0.12 -1.25 5.57 -26.65 -0.15 -1.40 16 29 H 0.09 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.10 1.04 7.83 -52.49 -0.41 0.63 16 31 H 0.10 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.39 7.38 -51.93 -0.38 0.00 16 36 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.40 2.68 8.61 -40.82 -0.35 2.32 16 40 H 0.08 1.13 7.57 -51.93 -0.39 0.73 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.11 2.19 5.78 -51.93 -0.30 1.89 16 45 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 46 H 0.09 1.42 7.99 -51.93 -0.41 1.01 16 47 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 48 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 49 H 0.03 0.38 8.14 -51.92 -0.42 -0.04 16 50 H 0.08 0.89 8.01 -51.93 -0.42 0.47 16 51 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 52 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 414.54 15.07 6.25 6.25 Total: -1.00 -32.66 414.54 -9.40 -42.06 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -9.24 Total: 11.03 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -0.90 Total: 2.59 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.64 Total: -55.11 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: 0.15 Total: -22.96 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.66 -9.40 -42.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228809037.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.260 kcal (2) G-P(sol) polarization free energy of solvation -32.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds