Wall clock time and date at job start Tue Mar 31 2020 20:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50705 * 119.99729 * 2 1 4 4 H 1.09001 * 109.46813 * 0.02562 * 3 2 1 5 5 C 1.53001 * 109.47188 * 240.00295 * 3 2 1 6 6 C 1.52994 * 109.47013 * 65.00023 * 5 3 2 7 7 C 1.53001 * 109.47058 * 120.00020 * 3 2 1 8 8 C 1.50694 * 109.47168 * 295.00216 * 7 3 2 9 9 O 1.21283 * 120.00363 * 359.97438 * 8 7 3 10 10 N 1.34784 * 119.99988 * 179.97438 * 8 7 3 11 11 C 1.46493 * 119.99864 * 179.72721 * 10 8 7 12 12 C 1.53117 * 109.52115 * 274.67994 * 11 10 8 13 13 C 1.53044 * 109.27817 * 182.44058 * 12 11 10 14 14 N 1.46848 * 109.51961 * 59.18342 * 13 12 11 15 15 C 1.46901 * 111.00051 * 174.15952 * 14 13 12 16 16 C 1.50700 * 109.46966 * 294.20927 * 15 14 13 17 17 O 1.21290 * 120.00162 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00098 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00398 * 179.97438 * 18 16 15 20 20 H 1.08008 * 120.00024 * 0.02562 * 19 18 16 21 21 C 1.38956 * 120.00218 * 180.02562 * 19 18 16 22 22 N 1.31406 * 120.00041 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99756 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47597 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47014 * 120.00194 * 23 21 19 26 26 H 1.48498 * 109.47385 * 239.99793 * 23 21 19 27 27 C 1.46843 * 111.19917 * 298.25590 * 14 13 12 28 28 C 1.53032 * 109.52375 * 61.74115 * 27 14 13 29 29 H 1.07999 * 119.99449 * 179.97438 * 1 2 3 30 30 H 1.07995 * 120.00312 * 359.97438 * 1 2 3 31 31 H 1.07995 * 120.00312 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.46708 * 184.99656 * 5 3 2 33 33 H 1.08997 * 109.47065 * 304.99904 * 5 3 2 34 34 H 1.09001 * 109.47235 * 179.97438 * 6 5 3 35 35 H 1.08996 * 109.47284 * 299.99647 * 6 5 3 36 36 H 1.09005 * 109.47200 * 60.00337 * 6 5 3 37 37 H 1.08998 * 109.46837 * 175.00237 * 7 3 2 38 38 H 1.09002 * 109.46926 * 55.00041 * 7 3 2 39 39 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 40 40 H 1.08998 * 109.52775 * 34.87222 * 11 10 8 41 41 H 1.08999 * 109.50765 * 302.38461 * 12 11 10 42 42 H 1.08997 * 109.50698 * 62.50461 * 12 11 10 43 43 H 1.08990 * 109.46368 * 299.16506 * 13 12 11 44 44 H 1.09004 * 109.45102 * 179.18675 * 13 12 11 45 45 H 1.09003 * 109.47079 * 54.20062 * 15 14 13 46 46 H 1.08998 * 109.47479 * 174.20835 * 15 14 13 47 47 H 0.97006 * 120.00049 * 0.02562 * 18 16 15 48 48 H 0.96994 * 120.00093 * 179.97438 * 22 21 19 49 49 H 1.09007 * 109.46353 * 301.73035 * 27 14 13 50 50 H 1.08996 * 109.45613 * 181.75892 * 27 14 13 51 51 H 1.09003 * 109.50256 * 180.88210 * 28 27 14 52 52 H 1.08999 * 109.50411 * 60.76825 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9430 1.3863 -1.2493 6 6 2.0563 1.4309 -2.4953 7 6 2.9431 1.3863 1.2492 8 6 2.0698 1.4300 2.4765 9 8 0.8626 1.3999 2.3633 10 7 2.6302 1.5027 3.7002 11 6 1.7811 1.5513 4.8930 12 6 1.3657 2.9994 5.1667 13 6 0.5297 3.0518 6.4475 14 7 1.3190 2.5296 7.5703 15 6 0.5993 2.6924 8.8406 16 6 0.4525 4.1599 9.1503 17 8 0.9036 4.9886 8.3881 18 7 -0.1799 4.5515 10.2741 19 6 -0.3130 5.8865 10.5562 20 1 0.0887 6.6245 9.8775 21 6 -0.9646 6.2902 11.7152 22 7 -1.4528 5.3923 12.5412 23 14 -1.1464 8.1092 12.0990 24 1 -0.5158 8.9088 11.0182 25 1 -2.5880 8.4537 12.1923 26 1 -0.4808 8.4114 13.3916 27 6 1.6893 1.1256 7.3515 28 6 2.5598 1.0157 6.0977 29 1 -0.5399 -0.9353 -0.0004 30 1 -0.5400 0.9352 0.0004 31 1 1.8500 -0.9352 -0.0004 32 1 3.5538 2.2881 -1.2056 33 1 3.5905 0.5107 -1.2952 34 1 2.6829 1.4891 -3.3853 35 1 1.4455 0.5292 -2.5390 36 1 1.4088 2.3066 -2.4493 37 1 3.5539 2.2880 1.2056 38 1 3.5906 0.5106 1.2951 39 1 3.5956 1.5272 3.7907 40 1 0.8926 0.9406 4.7328 41 1 2.2558 3.6168 5.2876 42 1 0.7742 3.3726 4.3307 43 1 -0.3671 2.4454 6.3210 44 1 0.2445 4.0836 6.6529 45 1 -0.3881 2.2377 8.7596 46 1 1.1586 2.2065 9.6400 47 1 -0.5403 3.8887 10.8839 48 1 -1.9073 5.6741 13.3504 49 1 0.7870 0.5281 7.2207 50 1 2.2461 0.7584 8.2136 51 1 2.8215 -0.0286 5.9267 52 1 3.4688 1.6017 6.2332 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228809037.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:42 Heat of formation + Delta-G solvation = -90.144126 kcal Electronic energy + Delta-G solvation = -29176.085390 eV Core-core repulsion = 25174.244330 eV Total energy + Delta-G solvation = -4001.841061 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.19876 -40.43692 -39.15381 -37.61842 -36.14552 -35.65909 -33.34928 -32.90291 -32.57319 -31.81499 -31.01275 -28.63646 -26.53965 -25.53318 -24.22204 -23.63235 -22.49258 -21.41633 -21.05318 -20.84955 -20.36971 -19.87069 -18.01975 -17.63355 -17.36962 -16.70586 -16.52737 -16.37740 -16.25364 -15.71198 -15.61873 -15.42878 -15.33862 -15.04090 -14.78688 -14.57581 -14.36313 -14.24750 -13.87040 -13.75609 -13.50930 -13.18797 -13.01817 -12.97213 -12.84900 -12.73274 -12.42385 -12.32743 -12.18937 -12.13507 -12.11324 -12.03401 -11.82660 -11.66644 -11.53627 -11.44023 -11.34147 -10.78292 -10.29935 -10.06494 -9.98533 -9.86928 -9.20894 -8.46408 -5.94690 1.35961 1.41001 1.55146 1.55600 1.79716 2.06290 2.26677 2.28774 2.76618 3.20433 3.38163 3.70818 3.84353 3.88844 3.89777 3.94959 4.09641 4.20178 4.30166 4.36398 4.38735 4.42592 4.47236 4.48099 4.53195 4.56147 4.60079 4.66890 4.69868 4.75266 4.86123 4.94099 4.98597 5.02906 5.07218 5.08761 5.11373 5.12989 5.20071 5.32757 5.40724 5.41456 5.47632 5.59790 5.84349 5.89173 6.07659 6.07896 6.24871 6.61554 6.69477 7.13860 7.41476 7.57539 8.13684 8.71287 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022626 B = 0.001830 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.195192 B =15293.340759 C =15824.234527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.144 4.144 3 C -0.046 4.046 4 H 0.054 0.946 5 C -0.110 4.110 6 C -0.153 4.153 7 C -0.127 4.127 8 C 0.502 3.498 9 O -0.574 6.574 10 N -0.717 5.717 11 C 0.154 3.846 12 C -0.108 4.108 13 C 0.060 3.940 14 N -0.529 5.529 15 C 0.057 3.943 16 C 0.441 3.559 17 O -0.614 6.614 18 N -0.575 5.575 19 C -0.331 4.331 20 H 0.078 0.922 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.274 1.274 25 H -0.272 1.272 26 H -0.270 1.270 27 C 0.054 3.946 28 C -0.109 4.109 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.043 0.957 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.415 0.585 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.049 0.951 43 H 0.023 0.977 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.116 0.884 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.038 0.962 50 H 0.099 0.901 51 H 0.100 0.900 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.890 -15.703 -22.261 29.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.161 4.161 3 C -0.065 4.065 4 H 0.073 0.927 5 C -0.147 4.147 6 C -0.211 4.211 7 C -0.166 4.166 8 C 0.290 3.710 9 O -0.453 6.453 10 N -0.369 5.369 11 C 0.048 3.952 12 C -0.147 4.147 13 C -0.068 4.068 14 N -0.254 5.254 15 C -0.074 4.074 16 C 0.228 3.772 17 O -0.500 6.500 18 N -0.213 5.213 19 C -0.461 4.461 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.199 1.199 25 H -0.197 1.197 26 H -0.195 1.195 27 C -0.074 4.074 28 C -0.147 4.147 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.135 0.865 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.252 0.748 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.042 0.958 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.134 0.866 47 H 0.230 0.770 48 H 0.086 0.914 49 H 0.057 0.943 50 H 0.117 0.883 51 H 0.118 0.882 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.670 -14.896 -22.654 29.518 hybrid contribution -1.321 0.434 0.910 1.662 sum 10.349 -14.462 -21.744 28.090 Atomic orbital electron populations 1.23680 0.96722 1.00708 1.01161 1.22850 0.95654 0.98094 0.99548 1.20165 0.96605 0.95644 0.94107 0.92746 1.21513 0.97510 1.03216 0.92484 1.21775 0.99947 1.01366 0.97995 1.21759 0.98170 1.06640 0.90073 1.21391 0.89171 0.74713 0.85676 1.90721 1.16912 1.50570 1.87120 1.46012 1.10915 1.74965 1.05003 1.20806 0.94206 0.94967 0.85208 1.21764 0.99902 0.97857 0.95219 1.22011 0.93914 1.00251 0.90639 1.61526 1.43694 1.19580 1.00639 1.21734 0.98974 0.92606 0.94101 1.20807 0.82080 0.91802 0.82502 1.90462 1.53503 1.55688 1.50309 1.41941 1.50826 1.07719 1.20788 1.19684 1.35775 0.84030 1.06577 0.90411 1.26020 0.95942 1.04220 0.95135 1.69673 1.38185 1.35371 1.12955 0.84882 0.78203 0.77119 0.78190 1.19898 1.19738 1.19481 1.22215 0.99042 0.86605 0.99501 1.21785 0.98761 1.02704 0.91472 0.88779 0.90593 0.86535 0.90657 0.90279 0.91758 0.93140 0.93803 0.86602 0.86059 0.74811 0.91630 0.91608 0.93194 0.95846 0.92125 0.91957 0.86597 0.77047 0.91351 0.94346 0.88318 0.88154 0.89911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.81 13.22 67.78 0.90 -2.91 16 2 C -0.14 -2.40 6.76 25.65 0.17 -2.23 16 3 C -0.05 -0.67 1.82 -11.54 -0.02 -0.70 16 4 H 0.05 1.10 7.60 -2.39 -0.02 1.08 16 5 C -0.11 -1.08 5.39 30.59 0.16 -0.91 16 6 C -0.15 -1.77 9.73 71.98 0.70 -1.07 16 7 C -0.13 -1.44 5.16 29.85 0.15 -1.29 16 8 C 0.50 9.98 7.55 87.65 0.66 10.64 16 9 O -0.57 -16.76 13.83 -3.04 -0.04 -16.80 16 10 N -0.72 -12.07 5.08 -442.17 -2.25 -14.31 16 11 C 0.15 3.42 2.53 45.07 0.11 3.53 16 12 C -0.11 -3.19 5.67 30.65 0.17 -3.02 16 13 C 0.06 2.11 5.11 86.33 0.44 2.55 16 14 N -0.53 -17.11 4.40 -900.93 -3.96 -21.07 16 15 C 0.06 2.00 5.45 85.56 0.47 2.47 16 16 C 0.44 21.31 7.46 87.66 0.65 21.97 16 17 O -0.61 -34.31 13.90 -3.06 -0.04 -34.35 16 18 N -0.58 -29.95 5.29 -306.98 -1.62 -31.57 16 19 C -0.33 -19.07 9.68 84.04 0.81 -18.25 16 20 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 21 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 22 N -0.92 -50.17 13.05 21.66 0.28 -49.89 16 23 Si 0.99 43.57 29.55 68.60 2.03 45.60 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 27 C 0.05 1.20 5.46 86.32 0.47 1.68 16 28 C -0.11 -1.94 5.57 30.65 0.17 -1.76 16 29 H 0.09 1.74 8.06 -2.91 -0.02 1.72 16 30 H 0.08 1.83 7.83 -2.91 -0.02 1.80 16 31 H 0.12 1.55 8.06 -2.91 -0.02 1.53 16 32 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.05 0.65 7.38 -2.39 -0.02 0.63 16 36 H 0.04 0.58 8.14 -2.38 -0.02 0.56 16 37 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.42 4.17 8.61 -92.71 -0.80 3.37 16 40 H 0.07 1.74 7.57 -2.39 -0.02 1.72 16 41 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.02 0.79 8.14 -2.39 -0.02 0.78 16 44 H 0.06 2.67 5.78 -2.38 -0.01 2.66 16 45 H 0.06 2.02 8.12 -2.39 -0.02 2.00 16 46 H 0.12 3.46 7.99 -2.39 -0.02 3.44 16 47 H 0.40 19.55 7.90 -92.70 -0.73 18.81 16 48 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 49 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 50 H 0.10 1.85 8.01 -2.39 -0.02 1.83 16 51 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 52 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -74.77 414.54 0.27 -74.51 By element: Atomic # 1 Polarization: 38.10 SS G_CDS: -0.63 Total: 37.47 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 6.50 Total: 10.42 kcal Atomic # 7 Polarization: -109.30 SS G_CDS: -7.55 Total: -116.84 kcal Atomic # 8 Polarization: -51.07 SS G_CDS: -0.08 Total: -51.15 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -74.77 0.27 -74.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228809037.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.637 kcal (2) G-P(sol) polarization free energy of solvation -74.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds