Wall clock time and date at job start Tue Mar 31 2020 20:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50700 * 119.99999 * 2 1 4 4 H 1.09005 * 109.47194 * 0.02562 * 3 2 1 5 5 C 1.52995 * 109.47120 * 120.00454 * 3 2 1 6 6 C 1.53002 * 109.46960 * 294.99830 * 5 3 2 7 7 C 1.52994 * 109.47092 * 240.00120 * 3 2 1 8 8 C 1.50707 * 109.47088 * 65.00161 * 7 3 2 9 9 O 1.21286 * 119.99906 * 359.97438 * 8 7 3 10 10 N 1.34772 * 119.99825 * 179.97438 * 8 7 3 11 11 C 1.46509 * 119.99730 * 179.97438 * 10 8 7 12 12 C 1.53119 * 109.52055 * 204.99995 * 11 10 8 13 13 C 1.53039 * 109.27478 * 182.44111 * 12 11 10 14 14 N 1.46852 * 109.52336 * 59.18093 * 13 12 11 15 15 C 1.46900 * 111.00118 * 174.15791 * 14 13 12 16 16 C 1.50697 * 109.47237 * 293.61170 * 15 14 13 17 17 O 1.21294 * 119.99957 * 353.73088 * 16 15 14 18 18 N 1.34777 * 120.00218 * 173.72893 * 16 15 14 19 19 C 1.37099 * 120.00043 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99929 * 0.02562 * 19 18 16 21 21 C 1.38955 * 119.99738 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00132 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99888 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47281 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47325 * 120.00225 * 23 21 19 26 26 H 1.48503 * 109.47321 * 240.00026 * 23 21 19 27 27 C 1.46845 * 111.19897 * 298.25829 * 14 13 12 28 28 C 1.53038 * 109.52423 * 61.74130 * 27 14 13 29 29 H 1.07998 * 119.99848 * 359.97438 * 1 2 3 30 30 H 1.07997 * 119.99555 * 180.02562 * 1 2 3 31 31 H 1.07999 * 119.99843 * 180.02562 * 2 1 3 32 32 H 1.09006 * 109.47309 * 54.99338 * 5 3 2 33 33 H 1.08994 * 109.47376 * 175.00085 * 5 3 2 34 34 H 1.08999 * 109.47274 * 179.97438 * 6 5 3 35 35 H 1.08998 * 109.47231 * 300.00195 * 6 5 3 36 36 H 1.09007 * 109.47012 * 60.00320 * 6 5 3 37 37 H 1.08997 * 109.47556 * 305.00249 * 7 3 2 38 38 H 1.08995 * 109.47255 * 184.99755 * 7 3 2 39 39 H 0.97001 * 120.00964 * 0.02562 * 10 8 7 40 40 H 1.08999 * 109.52385 * 325.12948 * 11 10 8 41 41 H 1.08998 * 109.50519 * 62.50799 * 12 11 10 42 42 H 1.08998 * 109.53606 * 302.39924 * 12 11 10 43 43 H 1.08994 * 109.46299 * 299.16822 * 13 12 11 44 44 H 1.09003 * 109.45395 * 179.18930 * 13 12 11 45 45 H 1.08996 * 109.46919 * 173.61386 * 15 14 13 46 46 H 1.08994 * 109.47139 * 53.61230 * 15 14 13 47 47 H 0.97002 * 119.99804 * 0.02562 * 18 16 15 48 48 H 0.96995 * 120.00108 * 179.97438 * 22 21 19 49 49 H 1.08998 * 109.46555 * 181.75400 * 27 14 13 50 50 H 1.09004 * 109.46392 * 301.72721 * 27 14 13 51 51 H 1.08998 * 109.50374 * 180.88473 * 28 27 14 52 52 H 1.09001 * 109.50604 * 60.76106 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9433 1.3861 1.2491 6 6 2.0566 1.4306 2.4953 7 6 2.9431 1.3862 -1.2492 8 6 2.0697 1.4301 -2.4766 9 8 0.8626 1.3991 -2.3632 10 7 2.6300 1.5038 -3.7001 11 6 1.7809 1.5460 -4.8933 12 6 2.5629 1.0126 -6.0968 13 6 1.6921 1.1158 -7.3511 14 7 1.3143 2.5175 -7.5723 15 6 0.5940 2.6744 -8.8429 16 6 1.5263 2.3769 -9.9889 17 8 2.7036 2.1764 -9.7766 18 7 1.0520 2.3335 -11.2497 19 6 1.9002 2.0633 -12.2923 20 1 2.9484 1.8848 -12.1033 21 6 1.4112 2.0191 -13.5922 22 7 0.1358 2.2368 -13.8222 23 14 2.5668 1.6502 -15.0127 24 1 3.9419 1.4437 -14.4914 25 1 2.1138 0.4217 -15.7132 26 1 2.5633 2.7915 -15.9629 27 6 0.5220 3.0373 -6.4505 28 6 1.3579 2.9915 -5.1694 29 1 -0.5400 0.9353 0.0004 30 1 -0.5399 -0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 3.5907 0.5103 1.2951 33 1 3.5541 2.2877 1.2055 34 1 2.6833 1.4879 3.3853 35 1 1.4091 2.3063 2.4494 36 1 1.4457 0.5289 2.5389 37 1 3.5906 0.5105 -1.2952 38 1 3.5540 2.2878 -1.2056 39 1 3.5955 1.5282 -3.7908 40 1 0.8957 0.9307 -4.7323 41 1 2.8301 -0.0300 -5.9242 42 1 3.4690 1.6028 -6.2334 43 1 0.7930 0.5138 -7.2195 44 1 2.2512 0.7501 -8.2123 45 1 0.2276 3.6974 -8.9289 46 1 -0.2482 1.9832 -8.8708 47 1 0.1105 2.4942 -11.4195 48 1 -0.2054 2.2063 -14.7297 49 1 0.2312 4.0671 -6.6576 50 1 -0.3716 2.4263 -6.3231 51 1 0.7642 3.3627 -4.3340 52 1 2.2448 3.6133 -5.2910 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228809039.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:46 Heat of formation + Delta-G solvation = -68.211484 kcal Electronic energy + Delta-G solvation = -29097.574875 eV Core-core repulsion = 25096.684885 eV Total energy + Delta-G solvation = -4000.889990 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.27659 -39.02854 -37.73058 -36.84711 -34.89038 -33.83687 -32.06231 -31.92200 -31.19297 -30.71642 -30.27241 -27.16245 -25.24625 -24.28528 -23.13002 -22.50021 -21.90609 -20.55969 -19.92271 -19.64752 -19.15243 -17.84769 -17.11112 -16.46917 -15.99971 -15.75098 -15.33499 -14.95614 -14.92047 -14.80848 -14.52807 -14.27042 -13.90777 -13.86733 -13.76998 -13.55043 -13.33908 -13.05499 -12.98786 -12.47220 -12.27585 -12.18845 -11.86136 -11.67663 -11.57419 -11.51236 -11.44098 -11.23108 -11.12774 -11.08591 -11.04455 -10.77573 -10.73486 -10.39708 -10.33874 -10.21670 -9.94231 -9.47409 -9.32600 -9.04506 -8.42200 -7.96088 -7.83679 -6.40834 -3.81536 2.25420 2.57518 3.04846 3.16579 3.27090 3.34042 3.92621 4.00122 4.25281 4.41256 4.45397 4.52941 4.78396 4.83251 4.92636 4.95003 5.07296 5.09658 5.14788 5.16691 5.18636 5.26330 5.33795 5.38276 5.48885 5.51740 5.56599 5.58160 5.63316 5.68812 5.72417 5.78095 5.83703 5.88719 5.90320 5.99143 6.03346 6.04366 6.15690 6.25803 6.32860 6.42781 6.47975 6.55412 6.74636 7.29680 7.40930 7.44627 7.56135 8.07896 8.15510 8.63246 9.19359 9.56198 10.08023 10.77044 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.037063 B = 0.001703 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.285527 B =16439.986407 C =16658.614781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.153 4.153 3 C -0.044 4.044 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.136 4.136 8 C 0.510 3.490 9 O -0.533 6.533 10 N -0.728 5.728 11 C 0.144 3.856 12 C -0.118 4.118 13 C 0.059 3.941 14 N -0.515 5.515 15 C 0.046 3.954 16 C 0.444 3.556 17 O -0.577 6.577 18 N -0.566 5.566 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.058 3.942 28 C -0.121 4.121 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.399 0.601 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.025 0.975 44 H 0.102 0.898 45 H 0.089 0.911 46 H 0.046 0.954 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.076 0.924 50 H 0.031 0.969 51 H 0.067 0.933 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.513 -1.722 27.668 27.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C -0.063 4.063 4 H 0.099 0.901 5 C -0.154 4.154 6 C -0.209 4.209 7 C -0.176 4.176 8 C 0.296 3.704 9 O -0.409 6.409 10 N -0.379 5.379 11 C 0.040 3.960 12 C -0.156 4.156 13 C -0.069 4.069 14 N -0.240 5.240 15 C -0.085 4.085 16 C 0.229 3.771 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.071 4.071 28 C -0.160 4.160 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.118 0.882 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.233 0.767 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.043 0.957 44 H 0.120 0.880 45 H 0.107 0.893 46 H 0.064 0.936 47 H 0.225 0.775 48 H 0.080 0.920 49 H 0.094 0.906 50 H 0.049 0.951 51 H 0.086 0.914 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.757 -1.612 27.687 27.871 hybrid contribution -0.413 -0.517 -1.058 1.248 sum 2.344 -2.129 26.629 26.816 Atomic orbital electron populations 1.23700 0.95938 1.01311 0.98998 1.22615 0.95978 0.97018 1.01510 1.20148 0.96552 0.97105 0.92457 0.90086 1.21544 0.97862 1.01941 0.94046 1.21760 0.99837 1.02163 0.97109 1.21731 0.98742 1.04276 0.92827 1.20671 0.89276 0.75823 0.84608 1.90711 1.14766 1.48838 1.86561 1.46177 1.10349 1.75477 1.05886 1.21074 0.94115 0.97020 0.83781 1.21820 0.99689 1.01013 0.93126 1.22109 0.97940 0.88144 0.98716 1.61521 1.42294 1.19587 1.00587 1.21845 0.95019 1.01969 0.89693 1.19760 0.89096 0.84572 0.83648 1.90497 1.17049 1.54474 1.84071 1.41893 1.11464 1.62035 1.04855 1.19746 0.93652 1.44585 0.84777 0.87870 1.25257 0.96448 0.97504 0.98774 1.69620 1.12809 1.49849 1.22060 0.85810 0.80189 0.77869 0.80519 1.19244 1.20816 1.20775 1.22052 0.94221 1.00311 0.90508 1.21915 1.00743 0.96622 0.96702 0.88637 0.89266 0.88177 0.91856 0.91817 0.92923 0.92794 0.92400 0.88956 0.88834 0.76732 0.89929 0.91354 0.90281 0.95712 0.88006 0.89260 0.93556 0.77515 0.91956 0.90558 0.95074 0.91410 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 13.22 29.01 0.38 -1.16 16 2 C -0.15 -1.32 6.76 -36.03 -0.24 -1.56 16 3 C -0.04 -0.33 1.82 -91.78 -0.17 -0.50 16 4 H 0.08 0.74 7.60 -51.93 -0.39 0.34 16 5 C -0.12 -0.67 5.39 -26.73 -0.14 -0.81 16 6 C -0.15 -0.89 9.73 37.16 0.36 -0.53 16 7 C -0.14 -0.92 5.16 -27.88 -0.14 -1.07 16 8 C 0.51 5.22 7.55 -10.98 -0.08 5.13 16 9 O -0.53 -7.32 13.83 5.55 0.08 -7.24 16 10 N -0.73 -6.87 5.08 -53.68 -0.27 -7.15 16 11 C 0.14 1.70 2.52 -67.80 -0.17 1.53 16 12 C -0.12 -1.49 5.57 -26.65 -0.15 -1.64 16 13 C 0.06 0.94 5.12 -3.83 -0.02 0.92 16 14 N -0.52 -8.54 4.35 -236.12 -1.03 -9.56 16 15 C 0.05 0.83 5.45 -4.98 -0.03 0.80 16 16 C 0.44 10.39 7.31 -10.99 -0.08 10.31 16 17 O -0.58 -15.29 14.29 5.55 0.08 -15.21 16 18 N -0.57 -14.27 5.29 -10.96 -0.06 -14.33 16 19 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.54 13.05 55.50 0.72 -23.81 16 23 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 C 0.06 0.78 5.46 -3.83 -0.02 0.76 16 28 C -0.12 -1.48 5.67 -26.65 -0.15 -1.63 16 29 H 0.10 0.98 7.83 -52.49 -0.41 0.57 16 30 H 0.09 0.78 8.06 -52.49 -0.42 0.35 16 31 H 0.10 0.79 8.06 -52.49 -0.42 0.36 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.37 7.38 -51.93 -0.38 -0.01 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.40 2.81 8.61 -40.82 -0.35 2.46 16 40 H 0.08 1.12 7.58 -51.93 -0.39 0.73 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.10 1.96 6.06 -51.93 -0.31 1.64 16 45 H 0.09 1.46 7.98 -51.93 -0.41 1.05 16 46 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 47 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 48 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 49 H 0.08 0.97 8.01 -51.93 -0.42 0.55 16 50 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 51 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 52 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 414.99 15.07 6.25 6.25 Total: -1.00 -32.18 414.99 -9.39 -41.58 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -9.25 Total: 10.89 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -0.90 Total: 2.62 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.63 Total: -54.85 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: 0.16 Total: -22.45 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.18 -9.39 -41.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228809039.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.635 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds