Wall clock time and date at job start Tue Mar 31 2020 20:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50700 * 119.99999 * 2 1 4 4 H 1.09005 * 109.47194 * 0.02562 * 3 2 1 5 5 C 1.52995 * 109.47120 * 120.00454 * 3 2 1 6 6 C 1.53002 * 109.46960 * 294.99830 * 5 3 2 7 7 C 1.52994 * 109.47092 * 240.00120 * 3 2 1 8 8 C 1.50707 * 109.47088 * 65.00161 * 7 3 2 9 9 O 1.21286 * 119.99906 * 359.97438 * 8 7 3 10 10 N 1.34772 * 119.99825 * 179.97438 * 8 7 3 11 11 C 1.46509 * 119.99730 * 179.97438 * 10 8 7 12 12 C 1.53119 * 109.52055 * 204.99995 * 11 10 8 13 13 C 1.53039 * 109.27478 * 182.44111 * 12 11 10 14 14 N 1.46852 * 109.52336 * 59.18093 * 13 12 11 15 15 C 1.46900 * 111.00118 * 174.15791 * 14 13 12 16 16 C 1.50697 * 109.47237 * 293.61170 * 15 14 13 17 17 O 1.21294 * 119.99957 * 353.73088 * 16 15 14 18 18 N 1.34777 * 120.00218 * 173.72893 * 16 15 14 19 19 C 1.37099 * 120.00043 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99929 * 0.02562 * 19 18 16 21 21 C 1.38955 * 119.99738 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00132 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99888 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47281 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47325 * 120.00225 * 23 21 19 26 26 H 1.48503 * 109.47321 * 240.00026 * 23 21 19 27 27 C 1.46845 * 111.19897 * 298.25829 * 14 13 12 28 28 C 1.53038 * 109.52423 * 61.74130 * 27 14 13 29 29 H 1.07998 * 119.99848 * 359.97438 * 1 2 3 30 30 H 1.07997 * 119.99555 * 180.02562 * 1 2 3 31 31 H 1.07999 * 119.99843 * 180.02562 * 2 1 3 32 32 H 1.09006 * 109.47309 * 54.99338 * 5 3 2 33 33 H 1.08994 * 109.47376 * 175.00085 * 5 3 2 34 34 H 1.08999 * 109.47274 * 179.97438 * 6 5 3 35 35 H 1.08998 * 109.47231 * 300.00195 * 6 5 3 36 36 H 1.09007 * 109.47012 * 60.00320 * 6 5 3 37 37 H 1.08997 * 109.47556 * 305.00249 * 7 3 2 38 38 H 1.08995 * 109.47255 * 184.99755 * 7 3 2 39 39 H 0.97001 * 120.00964 * 0.02562 * 10 8 7 40 40 H 1.08999 * 109.52385 * 325.12948 * 11 10 8 41 41 H 1.08998 * 109.50519 * 62.50799 * 12 11 10 42 42 H 1.08998 * 109.53606 * 302.39924 * 12 11 10 43 43 H 1.08994 * 109.46299 * 299.16822 * 13 12 11 44 44 H 1.09003 * 109.45395 * 179.18930 * 13 12 11 45 45 H 1.08996 * 109.46919 * 173.61386 * 15 14 13 46 46 H 1.08994 * 109.47139 * 53.61230 * 15 14 13 47 47 H 0.97002 * 119.99804 * 0.02562 * 18 16 15 48 48 H 0.96995 * 120.00108 * 179.97438 * 22 21 19 49 49 H 1.08998 * 109.46555 * 181.75400 * 27 14 13 50 50 H 1.09004 * 109.46392 * 301.72721 * 27 14 13 51 51 H 1.08998 * 109.50374 * 180.88473 * 28 27 14 52 52 H 1.09001 * 109.50604 * 60.76106 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9433 1.3861 1.2491 6 6 2.0566 1.4306 2.4953 7 6 2.9431 1.3862 -1.2492 8 6 2.0697 1.4301 -2.4766 9 8 0.8626 1.3991 -2.3632 10 7 2.6300 1.5038 -3.7001 11 6 1.7809 1.5460 -4.8933 12 6 2.5629 1.0126 -6.0968 13 6 1.6921 1.1158 -7.3511 14 7 1.3143 2.5175 -7.5723 15 6 0.5940 2.6744 -8.8429 16 6 1.5263 2.3769 -9.9889 17 8 2.7036 2.1764 -9.7766 18 7 1.0520 2.3335 -11.2497 19 6 1.9002 2.0633 -12.2923 20 1 2.9484 1.8848 -12.1033 21 6 1.4112 2.0191 -13.5922 22 7 0.1358 2.2368 -13.8222 23 14 2.5668 1.6502 -15.0127 24 1 3.9419 1.4437 -14.4914 25 1 2.1138 0.4217 -15.7132 26 1 2.5633 2.7915 -15.9629 27 6 0.5220 3.0373 -6.4505 28 6 1.3579 2.9915 -5.1694 29 1 -0.5400 0.9353 0.0004 30 1 -0.5399 -0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 3.5907 0.5103 1.2951 33 1 3.5541 2.2877 1.2055 34 1 2.6833 1.4879 3.3853 35 1 1.4091 2.3063 2.4494 36 1 1.4457 0.5289 2.5389 37 1 3.5906 0.5105 -1.2952 38 1 3.5540 2.2878 -1.2056 39 1 3.5955 1.5282 -3.7908 40 1 0.8957 0.9307 -4.7323 41 1 2.8301 -0.0300 -5.9242 42 1 3.4690 1.6028 -6.2334 43 1 0.7930 0.5138 -7.2195 44 1 2.2512 0.7501 -8.2123 45 1 0.2276 3.6974 -8.9289 46 1 -0.2482 1.9832 -8.8708 47 1 0.1105 2.4942 -11.4195 48 1 -0.2054 2.2063 -14.7297 49 1 0.2312 4.0671 -6.6576 50 1 -0.3716 2.4263 -6.3231 51 1 0.7642 3.3627 -4.3340 52 1 2.2448 3.6133 -5.2910 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228809039.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:45 Heat of formation + Delta-G solvation = -90.078360 kcal Electronic energy + Delta-G solvation = -29098.523094 eV Core-core repulsion = 25096.684885 eV Total energy + Delta-G solvation = -4001.838209 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.19290 -40.42187 -39.15485 -37.61178 -36.12367 -35.65863 -33.33006 -32.89740 -32.56355 -31.83692 -31.00653 -28.62637 -26.53907 -25.52795 -24.25945 -23.60511 -22.48380 -21.39481 -21.05840 -20.83354 -20.36254 -19.85960 -17.93822 -17.72853 -17.37809 -16.65779 -16.51711 -16.37077 -16.26983 -15.69708 -15.61814 -15.41014 -15.33675 -15.02020 -14.77239 -14.61897 -14.37179 -14.13410 -13.95877 -13.76491 -13.49404 -13.21014 -12.99947 -12.95578 -12.80111 -12.71574 -12.44498 -12.36561 -12.19755 -12.12360 -12.10396 -12.02261 -11.79460 -11.65531 -11.60804 -11.38698 -11.33378 -10.78009 -10.26618 -10.07303 -9.98557 -9.87665 -9.21622 -8.45249 -5.93707 1.37276 1.42410 1.56312 1.56526 1.80376 2.07246 2.26189 2.29372 2.74808 3.21784 3.38951 3.69092 3.85055 3.88086 3.89727 3.95998 4.08752 4.18887 4.29577 4.35265 4.39799 4.43245 4.45977 4.48116 4.52980 4.55620 4.60600 4.67057 4.70453 4.72100 4.87338 4.92797 4.97516 5.03260 5.05784 5.09563 5.10070 5.12648 5.21250 5.31731 5.41808 5.42588 5.48570 5.58889 5.85922 5.89226 6.07711 6.09007 6.21426 6.62336 6.68932 7.14705 7.40267 7.58536 8.14079 8.72487 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.037063 B = 0.001703 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.285527 B =16439.986407 C =16658.614781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.147 4.147 3 C -0.044 4.044 4 H 0.060 0.940 5 C -0.111 4.111 6 C -0.153 4.153 7 C -0.128 4.128 8 C 0.505 3.495 9 O -0.571 6.571 10 N -0.719 5.719 11 C 0.154 3.846 12 C -0.106 4.106 13 C 0.059 3.941 14 N -0.529 5.529 15 C 0.056 3.944 16 C 0.443 3.557 17 O -0.611 6.611 18 N -0.576 5.576 19 C -0.330 4.330 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 0.993 3.007 24 H -0.272 1.272 25 H -0.272 1.272 26 H -0.272 1.272 27 C 0.059 3.941 28 C -0.113 4.113 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.046 0.954 36 H 0.048 0.952 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.413 0.587 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.030 0.970 44 H 0.064 0.936 45 H 0.110 0.890 46 H 0.063 0.937 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.087 0.913 50 H 0.036 0.964 51 H 0.069 0.931 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.630 -1.623 28.739 29.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.165 4.165 3 C -0.063 4.063 4 H 0.079 0.921 5 C -0.148 4.148 6 C -0.210 4.210 7 C -0.168 4.168 8 C 0.293 3.707 9 O -0.450 6.450 10 N -0.371 5.371 11 C 0.049 3.951 12 C -0.145 4.145 13 C -0.069 4.069 14 N -0.254 5.254 15 C -0.075 4.075 16 C 0.230 3.770 17 O -0.497 6.497 18 N -0.214 5.214 19 C -0.460 4.460 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.563 5.563 23 Si 0.817 3.183 24 H -0.197 1.197 25 H -0.197 1.197 26 H -0.197 1.197 27 C -0.069 4.069 28 C -0.152 4.152 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.129 0.871 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.250 0.750 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.048 0.952 44 H 0.082 0.918 45 H 0.128 0.872 46 H 0.081 0.919 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.106 0.894 50 H 0.054 0.946 51 H 0.087 0.913 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.879 -1.505 28.777 29.076 hybrid contribution -0.770 -0.548 -1.338 1.638 sum 3.109 -2.053 27.439 27.691 Atomic orbital electron populations 1.23686 0.96604 1.00813 1.00956 1.22855 0.95769 0.98101 0.99744 1.20147 0.96577 0.95642 0.93907 0.92147 1.21519 0.97548 1.03131 0.92624 1.21772 0.99932 1.01438 0.97892 1.21766 0.98235 1.06545 0.90241 1.21323 0.89182 0.74707 0.85453 1.90709 1.16661 1.50574 1.87079 1.46051 1.10914 1.75036 1.05058 1.20787 0.93727 0.96340 0.84270 1.21691 0.98828 1.01966 0.91966 1.22031 0.98213 0.87981 0.98725 1.61514 1.43053 1.20010 1.00837 1.21732 0.93940 1.03499 0.88320 1.20710 0.89440 0.82537 0.84269 1.90469 1.19020 1.55455 1.84721 1.41959 1.11347 1.62813 1.05245 1.19706 0.93240 1.46731 0.86327 0.90183 1.26033 0.98021 0.96719 1.00580 1.69683 1.13898 1.49790 1.22957 0.84869 0.77910 0.78180 0.77358 1.19693 1.19744 1.19701 1.22122 0.94196 1.00795 0.89795 1.21833 1.00509 0.96859 0.95952 0.90091 0.89014 0.87056 0.90694 0.90491 0.91877 0.93470 0.93269 0.86661 0.86340 0.75032 0.91569 0.89948 0.90602 0.95175 0.91797 0.87156 0.91927 0.77146 0.91397 0.89419 0.94613 0.91278 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.57 13.22 67.77 0.90 -2.67 16 2 C -0.15 -2.38 6.76 25.64 0.17 -2.21 16 3 C -0.04 -0.59 1.82 -11.54 -0.02 -0.61 16 4 H 0.06 1.07 7.60 -2.38 -0.02 1.06 16 5 C -0.11 -1.00 5.39 30.59 0.16 -0.83 16 6 C -0.15 -1.60 9.73 71.98 0.70 -0.90 16 7 C -0.13 -1.37 5.16 29.85 0.15 -1.22 16 8 C 0.51 9.42 7.55 87.66 0.66 10.09 16 9 O -0.57 -15.36 13.83 -3.05 -0.04 -15.40 16 10 N -0.72 -12.07 5.08 -442.12 -2.25 -14.32 16 11 C 0.15 3.41 2.52 45.07 0.11 3.53 16 12 C -0.11 -2.57 5.57 30.65 0.17 -2.40 16 13 C 0.06 1.87 5.12 86.33 0.44 2.31 16 14 N -0.53 -17.14 4.35 -900.94 -3.92 -21.05 16 15 C 0.06 1.98 5.45 85.56 0.47 2.45 16 16 C 0.44 21.08 7.31 87.66 0.64 21.72 16 17 O -0.61 -33.28 14.29 -3.07 -0.04 -33.33 16 18 N -0.58 -29.66 5.29 -306.98 -1.62 -31.28 16 19 C -0.33 -18.76 9.68 84.04 0.81 -17.95 16 20 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 21 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 22 N -0.92 -50.00 13.05 21.66 0.28 -49.72 16 23 Si 0.99 42.98 29.55 68.60 2.03 45.00 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 27 C 0.06 1.50 5.46 86.33 0.47 1.97 16 28 C -0.11 -2.58 5.67 30.65 0.17 -2.41 16 29 H 0.08 1.77 7.83 -2.91 -0.02 1.75 16 30 H 0.09 1.65 8.06 -2.91 -0.02 1.62 16 31 H 0.11 1.54 8.06 -2.91 -0.02 1.52 16 32 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.05 0.59 7.38 -2.38 -0.02 0.58 16 37 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.41 4.66 8.61 -92.71 -0.80 3.86 16 40 H 0.07 1.74 7.58 -2.39 -0.02 1.72 16 41 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 43 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.06 2.53 6.06 -2.39 -0.01 2.52 16 45 H 0.11 3.44 7.98 -2.39 -0.02 3.42 16 46 H 0.06 2.02 8.12 -2.39 -0.02 2.00 16 47 H 0.39 19.44 7.90 -92.71 -0.73 18.71 16 48 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 49 H 0.09 2.04 8.01 -2.39 -0.02 2.02 16 50 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 51 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 52 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -71.14 414.99 0.30 -70.84 By element: Atomic # 1 Polarization: 39.30 SS G_CDS: -0.63 Total: 38.67 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 6.49 Total: 10.59 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -7.50 Total: -116.37 kcal Atomic # 8 Polarization: -48.64 SS G_CDS: -0.09 Total: -48.73 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -71.14 0.30 -70.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228809039.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.240 kcal (2) G-P(sol) polarization free energy of solvation -71.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds