Wall clock time and date at job start Tue Mar 31 2020 20:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.45203 * 109.47614 * 2 1 4 4 C 1.34228 * 117.00419 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99799 * 359.97438 * 4 3 2 6 6 C 1.50693 * 119.99884 * 179.97438 * 4 3 2 7 7 N 1.46902 * 109.46906 * 179.97438 * 6 4 3 8 8 C 1.46894 * 111.00416 * 293.95573 * 7 6 4 9 9 C 1.50699 * 109.47078 * 297.55455 * 8 7 6 10 10 H 1.07998 * 120.00192 * 5.54492 * 9 8 7 11 11 C 1.37884 * 120.00123 * 185.55670 * 9 8 7 12 12 N 1.31517 * 120.00162 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99893 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47379 * 89.99943 * 13 11 9 15 15 H 1.48497 * 109.46978 * 210.00423 * 13 11 9 16 16 H 1.48499 * 109.46757 * 329.99893 * 13 11 9 17 17 C 1.46900 * 111.00033 * 169.99817 * 7 6 4 18 18 C 1.50696 * 109.47260 * 198.01223 * 17 7 6 19 19 C 1.35323 * 126.04281 * 260.02647 * 18 17 7 20 20 N 1.34945 * 107.74554 * 180.02562 * 19 18 17 21 21 C 1.46499 * 126.03602 * 179.97438 * 20 19 18 22 22 N 1.40086 * 107.92724 * 359.97438 * 20 19 18 23 23 C 1.30837 * 108.20355 * 359.72397 * 22 20 19 24 24 C 1.50702 * 125.89694 * 180.25875 * 23 22 20 25 25 H 1.09004 * 109.47217 * 180.21116 * 24 23 22 26 26 C 1.52997 * 109.47579 * 60.20799 * 24 23 22 27 27 C 1.53006 * 109.46817 * 300.20435 * 24 23 22 28 28 C 1.53004 * 109.46813 * 185.00150 * 27 24 23 29 29 H 1.08998 * 109.47569 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47624 * 300.00448 * 1 2 3 31 31 H 1.09004 * 109.47329 * 60.00129 * 1 2 3 32 32 H 1.09001 * 109.47624 * 239.99552 * 2 1 3 33 33 H 1.09004 * 109.47329 * 119.99871 * 2 1 3 34 34 H 1.09000 * 109.47123 * 60.00321 * 6 4 3 35 35 H 1.08993 * 109.47298 * 299.99800 * 6 4 3 36 36 H 1.09010 * 109.47285 * 57.54969 * 8 7 6 37 37 H 1.08994 * 109.47516 * 177.54891 * 8 7 6 38 38 H 0.96994 * 119.99947 * 180.02562 * 12 11 9 39 39 H 1.09002 * 109.47352 * 318.01761 * 17 7 6 40 40 H 1.09001 * 109.46699 * 78.01823 * 17 7 6 41 41 H 1.07998 * 126.12205 * 0.02562 * 19 18 17 42 42 H 1.08996 * 109.47701 * 89.99423 * 21 20 19 43 43 H 1.08999 * 109.46754 * 209.99952 * 21 20 19 44 44 H 1.09004 * 109.47128 * 329.99173 * 21 20 19 45 45 H 1.08998 * 109.47011 * 59.99923 * 26 24 23 46 46 H 1.08997 * 109.47298 * 179.97438 * 26 24 23 47 47 H 1.09004 * 109.47105 * 300.00386 * 26 24 23 48 48 H 1.09000 * 109.47137 * 305.00306 * 27 24 23 49 49 H 1.09002 * 109.46552 * 65.00595 * 27 24 23 50 50 H 1.09001 * 109.46913 * 300.00209 * 28 27 24 51 51 H 1.09001 * 109.46767 * 60.00535 * 28 27 24 52 52 H 1.08998 * 109.46983 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9207 2.9373 0.0000 7 7 5.3877 2.8604 0.0014 8 6 5.8832 2.2777 1.2555 9 6 5.4946 3.1652 2.4097 10 1 4.8600 4.0228 2.2417 11 6 5.9493 2.8825 3.6803 12 7 5.6105 3.6573 4.6876 13 14 7.0465 1.3989 3.9711 14 1 8.4688 1.7978 3.8194 15 1 6.8219 0.8785 5.3436 16 1 6.7209 0.3409 2.9812 17 6 5.9844 4.1814 -0.2373 18 6 7.4194 4.0144 -0.6659 19 6 8.5084 4.1591 0.1243 20 7 9.6005 3.9275 -0.6339 21 6 10.9921 3.9782 -0.1789 22 7 9.1684 3.6300 -1.9328 23 6 7.8609 3.6763 -1.9493 24 6 6.9826 3.4150 -3.1457 25 1 5.9367 3.5295 -2.8605 26 6 7.2203 1.9909 -3.6518 27 6 7.3209 4.4136 -4.2545 28 6 6.3471 4.2304 -5.4203 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.5844 3.4700 0.8895 35 1 3.5853 3.4689 -0.8904 36 1 5.4462 1.2888 1.3943 37 1 6.9690 2.1922 1.2124 38 1 5.9307 3.4585 5.5814 39 1 5.4283 4.6949 -1.0216 40 1 5.9452 4.7688 0.6801 41 1 8.5042 4.4143 1.1737 42 1 11.2942 2.9933 0.1768 43 1 11.6343 4.2783 -1.0069 44 1 11.0832 4.7011 0.6319 45 1 6.9792 1.2796 -2.8619 46 1 6.5846 1.8019 -4.5168 47 1 8.2661 1.8765 -3.9370 48 1 7.2371 5.4289 -3.8671 49 1 8.3396 4.2399 -4.6013 50 1 6.4310 3.2150 -5.8077 51 1 5.3285 4.4040 -5.0735 52 1 6.5884 4.9414 -6.2104 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249410411.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:30 Heat of formation + Delta-G solvation = -13.197289 kcal Electronic energy + Delta-G solvation = -31056.869353 eV Core-core repulsion = 27058.364958 eV Total energy + Delta-G solvation = -3998.504395 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.88025 -39.89842 -37.05653 -36.23675 -35.59669 -32.72879 -32.34131 -31.59601 -30.40980 -29.39581 -28.33572 -27.47878 -25.94061 -24.44791 -23.59178 -22.97104 -21.41485 -21.20776 -20.03977 -19.40957 -18.48103 -17.34574 -16.92247 -16.26924 -16.17391 -15.52095 -15.22193 -14.85266 -14.50319 -14.43405 -14.38116 -14.13975 -13.69921 -13.41794 -13.18263 -13.16404 -12.83910 -12.64504 -12.53884 -12.39738 -12.09673 -12.01820 -11.93555 -11.81557 -11.45435 -11.39049 -11.34709 -11.18507 -11.09363 -10.88333 -10.66546 -10.55100 -10.51251 -10.43731 -10.15315 -9.99339 -9.88761 -9.63704 -9.44934 -8.73823 -8.58843 -7.87671 -7.20539 -6.14225 -4.12455 2.34513 2.88605 2.90438 3.02436 3.24051 3.32220 3.34304 3.44902 4.38837 4.74438 4.96667 5.04561 5.06437 5.10894 5.12003 5.21607 5.22491 5.29452 5.30361 5.42168 5.43033 5.51624 5.57551 5.59726 5.72148 5.78270 5.81794 5.82902 5.88164 5.88330 5.99734 6.04229 6.06854 6.12909 6.18619 6.20469 6.29956 6.35920 6.47576 6.61098 6.66573 6.79801 6.89959 6.97727 7.19672 7.28874 7.47620 7.54355 7.97827 8.05193 8.20958 8.39335 8.46695 8.86885 9.50576 10.98113 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007475 B = 0.005289 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3744.790293 B = 5292.878596 C = 8162.477356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.367 6.367 4 C 0.467 3.533 5 O -0.490 6.490 6 C 0.067 3.933 7 N -0.515 5.515 8 C 0.149 3.851 9 C -0.551 4.551 10 H 0.076 0.924 11 C 0.077 3.923 12 N -0.898 5.898 13 Si 0.870 3.130 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.262 1.262 17 C 0.134 3.866 18 C -0.205 4.205 19 C 0.067 3.933 20 N -0.387 5.387 21 C 0.108 3.892 22 N -0.308 5.308 23 C 0.099 3.901 24 C -0.003 4.003 25 H 0.090 0.910 26 C -0.139 4.139 27 C -0.113 4.113 28 C -0.152 4.152 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.044 0.956 37 H 0.027 0.973 38 H 0.263 0.737 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.173 0.827 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.061 0.939 46 H 0.055 0.945 47 H 0.052 0.948 48 H 0.059 0.941 49 H 0.063 0.937 50 H 0.056 0.944 51 H 0.054 0.946 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.414 0.277 -13.974 13.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.285 6.285 4 C 0.309 3.691 5 O -0.376 6.376 6 C -0.062 4.062 7 N -0.239 5.239 8 C 0.023 3.977 9 C -0.590 4.590 10 H 0.094 0.906 11 C -0.125 4.125 12 N -0.536 5.536 13 Si 0.697 3.303 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.186 1.186 17 C 0.006 3.994 18 C -0.216 4.216 19 C -0.078 4.078 20 N -0.169 5.169 21 C -0.034 4.034 22 N -0.129 5.129 23 C -0.067 4.067 24 C -0.023 4.023 25 H 0.108 0.892 26 C -0.197 4.197 27 C -0.152 4.152 28 C -0.209 4.209 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.062 0.938 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.191 0.809 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.078 0.922 49 H 0.081 0.919 50 H 0.075 0.925 51 H 0.074 0.926 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.186 -0.541 -14.769 14.826 hybrid contribution -0.121 -0.347 1.900 1.936 sum 1.065 -0.888 -12.868 12.943 Atomic orbital electron populations 1.21780 0.93168 1.02455 1.03342 1.22871 0.94852 0.81178 1.02258 1.86485 1.25574 1.31520 1.84916 1.23801 0.79742 0.93283 0.72245 1.90612 1.59909 1.43089 1.43953 1.21458 0.91272 0.89714 1.03729 1.62180 1.01814 1.22121 1.37783 1.20323 0.96036 0.96320 0.85067 1.21705 1.32370 1.12866 0.92069 0.90611 1.24859 0.95739 0.95882 0.96059 1.69920 1.45414 1.38211 1.00073 0.86922 0.81212 0.84479 0.77706 1.20347 1.21384 1.18626 1.20198 0.89202 0.90218 0.99808 1.19778 0.95617 1.13497 0.92755 1.22473 0.86224 1.01125 0.98023 1.48236 1.05977 1.55424 1.07220 1.21710 0.78438 1.02791 1.00446 1.77128 1.12604 1.25149 0.98067 1.22013 0.91071 0.98189 0.95468 1.19547 0.97624 0.95485 0.89654 0.89211 1.21780 1.01295 0.95742 1.00841 1.21544 0.99617 0.98943 0.95064 1.21823 0.99546 1.01573 0.97977 0.90736 0.91506 0.91719 0.91717 0.91523 0.89235 0.88556 0.93776 0.95532 0.92743 0.91978 0.91722 0.80949 0.91351 0.89909 0.89833 0.92034 0.92584 0.92850 0.92205 0.91852 0.92501 0.92641 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.29 37.15 0.38 -1.15 16 2 C 0.06 0.87 6.19 37.15 0.23 1.10 16 3 O -0.37 -6.18 10.22 -39.25 -0.40 -6.58 16 4 C 0.47 9.01 7.66 36.00 0.28 9.29 16 5 O -0.49 -10.90 14.07 -18.75 -0.26 -11.16 16 6 C 0.07 1.23 5.36 -4.98 -0.03 1.20 16 7 N -0.51 -10.40 4.38 -238.97 -1.05 -11.45 16 8 C 0.15 3.60 3.71 -4.98 -0.02 3.58 16 9 C -0.55 -14.56 7.84 -34.44 -0.27 -14.83 16 10 H 0.08 2.11 6.24 -52.49 -0.33 1.78 16 11 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 12 N -0.90 -26.36 13.96 55.43 0.77 -25.59 16 13 Si 0.87 21.65 27.36 -169.99 -4.65 17.00 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 H -0.26 -6.65 6.70 56.52 0.38 -6.27 16 17 C 0.13 2.44 4.79 -4.98 -0.02 2.42 16 18 C -0.20 -3.74 5.01 -105.05 -0.53 -4.26 16 19 C 0.07 1.20 10.84 -17.22 -0.19 1.01 16 20 N -0.39 -6.35 4.01 -68.16 -0.27 -6.63 16 21 C 0.11 1.26 11.47 59.85 0.69 1.94 16 22 N -0.31 -5.40 12.58 33.67 0.42 -4.97 16 23 C 0.10 1.70 5.73 -82.40 -0.47 1.23 16 24 C 0.00 -0.04 2.77 -91.77 -0.25 -0.29 16 25 H 0.09 1.30 7.18 -51.93 -0.37 0.92 16 26 C -0.14 -1.95 8.93 37.16 0.33 -1.62 16 27 C -0.11 -1.38 5.38 -26.73 -0.14 -1.53 16 28 C -0.15 -1.51 9.67 37.16 0.36 -1.15 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 33 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 34 H 0.09 1.76 6.35 -51.93 -0.33 1.43 16 35 H 0.10 1.40 7.84 -51.93 -0.41 0.99 16 36 H 0.04 1.18 5.29 -51.92 -0.27 0.90 16 37 H 0.03 0.67 6.19 -51.93 -0.32 0.35 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.06 0.97 7.32 -51.93 -0.38 0.59 16 40 H 0.06 1.31 6.36 -51.93 -0.33 0.98 16 41 H 0.17 3.01 8.06 -52.49 -0.42 2.59 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.06 0.66 6.57 -51.93 -0.34 0.32 16 47 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.06 0.55 6.57 -51.93 -0.34 0.20 16 51 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 52 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 414.85 15.07 6.25 6.25 Total: -1.00 -33.03 414.85 -7.87 -40.89 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -8.92 Total: 3.23 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 0.25 Total: -1.01 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: -0.12 Total: -48.63 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.67 Total: -17.74 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.65 Total: 17.00 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.03 -7.87 -40.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249410411.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.696 kcal (2) G-P(sol) polarization free energy of solvation -33.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds