Wall clock time and date at job start Tue Mar 31 2020 20:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47285 * 2 1 4 4 H 1.08996 * 109.47002 * 180.23288 * 3 2 1 5 5 C 1.50694 * 109.46815 * 300.23515 * 3 2 1 6 6 H 1.07996 * 120.00272 * 119.99943 * 5 3 2 7 7 C 1.37878 * 120.00195 * 300.27676 * 5 3 2 8 8 N 1.31519 * 119.99707 * 359.72282 * 7 5 3 9 9 Si 1.86806 * 120.00263 * 179.72622 * 7 5 3 10 10 H 1.48503 * 109.46650 * 59.99835 * 9 7 5 11 11 H 1.48501 * 109.47209 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47094 * 299.99749 * 9 7 5 13 13 N 1.46897 * 109.47183 * 60.23315 * 3 2 1 14 14 C 1.48659 * 110.99984 * 60.77014 * 13 3 2 15 15 C 1.55219 * 103.39616 * 159.01391 * 14 13 3 16 16 C 1.53348 * 102.60442 * 323.65657 * 15 14 13 17 17 C 1.53517 * 111.33886 * 143.05011 * 16 15 14 18 18 C 1.51967 * 102.21681 * 143.12832 * 17 16 15 19 19 C 1.47601 * 125.86332 * 165.70833 * 18 17 16 20 20 O 1.21556 * 119.99663 * 353.62617 * 19 18 17 21 21 N 1.34770 * 120.00539 * 173.63181 * 19 18 17 22 22 C 1.46504 * 119.99789 * 3.32711 * 21 19 18 23 23 C 1.46502 * 120.00469 * 183.33211 * 21 19 18 24 24 C 1.52998 * 109.47478 * 119.99859 * 23 21 19 25 25 C 1.53007 * 109.46843 * 239.99915 * 23 21 19 26 26 N 1.29182 * 108.27878 * 345.70488 * 18 17 16 27 27 O 1.41735 * 112.88840 * 359.75482 * 26 18 17 28 28 C 1.48248 * 110.99969 * 178.21730 * 13 3 2 29 29 H 1.09002 * 109.47256 * 305.06859 * 1 2 3 30 30 H 1.09004 * 109.46982 * 65.07039 * 1 2 3 31 31 H 1.08998 * 109.47349 * 185.06801 * 1 2 3 32 32 H 1.08998 * 109.47569 * 239.99973 * 2 1 3 33 33 H 1.09004 * 109.47083 * 119.99458 * 2 1 3 34 34 H 0.97006 * 119.99607 * 180.02562 * 8 7 5 35 35 H 1.08991 * 110.63968 * 277.49528 * 14 13 3 36 36 H 1.09006 * 110.63199 * 40.54094 * 14 13 3 37 37 H 1.09002 * 110.78247 * 205.37511 * 15 14 13 38 38 H 1.09004 * 110.94426 * 82.01105 * 15 14 13 39 39 H 1.08998 * 110.85723 * 261.30961 * 17 16 15 40 40 H 1.09000 * 110.85114 * 24.74500 * 17 16 15 41 41 H 1.09007 * 109.46969 * 84.14464 * 22 21 19 42 42 H 1.08996 * 109.47169 * 204.14325 * 22 21 19 43 43 H 1.08997 * 109.47273 * 324.14330 * 22 21 19 44 44 H 1.08999 * 109.46962 * 359.97438 * 23 21 19 45 45 H 1.08999 * 109.47386 * 59.99816 * 24 23 21 46 46 H 1.08996 * 109.47253 * 180.02562 * 24 23 21 47 47 H 1.09007 * 109.46608 * 300.00305 * 24 23 21 48 48 H 1.08999 * 109.46934 * 299.99517 * 25 23 21 49 49 H 1.08998 * 109.47154 * 59.99727 * 25 23 21 50 50 H 1.09000 * 109.46815 * 179.97438 * 25 23 21 51 51 H 1.08996 * 110.03813 * 333.61726 * 28 13 3 52 52 H 1.08994 * 110.03696 * 95.02175 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1300 1.4425 -0.0042 5 6 1.5329 2.1546 -1.2275 6 1 0.9124 3.0325 -1.1249 7 6 1.8564 1.6819 -2.4817 8 7 2.6121 0.6127 -2.6067 9 14 1.2215 2.5600 -4.0033 10 1 1.7159 3.9603 -4.0091 11 1 1.7078 1.8588 -5.2187 12 1 -0.2635 2.5594 -3.9918 13 7 1.5550 2.1334 1.2022 14 6 2.0515 1.4685 2.4356 15 6 1.9304 2.5770 3.5154 16 6 2.2918 3.8461 2.7342 17 6 1.4443 5.0425 3.1892 18 6 2.4382 6.1893 3.1100 19 6 2.1050 7.6267 3.1496 20 8 0.9425 7.9816 3.1372 21 7 3.0896 8.5456 3.1995 22 6 4.4908 8.1218 3.1408 23 6 2.7588 9.9683 3.3126 24 6 3.3701 10.5337 4.5961 25 6 3.3222 10.7204 2.1050 26 7 3.6249 5.6903 3.0020 27 8 3.6285 4.2730 2.9972 28 6 2.0654 3.5241 1.2581 29 1 -0.3634 0.5905 0.8411 30 1 -0.3633 0.4332 -0.9320 31 1 -0.3634 -1.0236 0.0908 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.8400 0.2804 -3.4891 35 1 1.4248 0.6140 2.6903 36 1 3.0906 1.1618 2.3149 37 1 2.6391 2.4066 4.3258 38 1 0.9123 2.6364 3.9002 39 1 0.6078 5.2063 2.5098 40 1 1.0906 4.9013 4.2105 41 1 4.7881 7.9930 2.1000 42 1 5.1196 8.8802 3.6071 43 1 4.6071 7.1769 3.6716 44 1 1.6759 10.0883 3.3420 45 1 4.4531 10.4138 4.5663 46 1 3.1236 11.5921 4.6804 47 1 2.9688 9.9978 5.4563 48 1 4.4052 10.6004 2.0753 49 1 2.8867 10.3176 1.1906 50 1 3.0757 11.7788 2.1889 51 1 3.0053 3.5993 0.7112 52 1 1.3310 4.2088 0.8341 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167444.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:43 Heat of formation + Delta-G solvation = -10.319392 kcal Electronic energy + Delta-G solvation = -30896.049028 eV Core-core repulsion = 26897.669427 eV Total energy + Delta-G solvation = -3998.379600 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.26704 -41.00572 -39.11876 -37.70201 -36.06903 -34.68298 -33.50885 -32.93256 -31.66991 -30.57282 -28.19804 -28.12671 -28.06496 -27.01537 -25.64594 -24.88622 -23.11965 -21.96635 -21.56130 -20.83800 -19.97326 -18.37278 -18.13923 -17.82377 -17.25197 -16.99243 -16.80501 -16.44111 -16.12897 -15.73375 -15.34675 -15.12680 -15.00609 -14.86136 -14.77899 -14.30547 -14.15389 -13.92878 -13.85832 -13.70631 -13.52490 -13.30295 -13.19515 -12.97048 -12.91800 -12.83458 -12.64715 -12.57191 -12.49458 -12.37954 -12.27023 -12.05096 -11.92609 -11.79864 -11.68201 -11.57799 -11.34312 -11.34003 -10.87303 -10.67863 -10.50535 -9.91967 -9.12230 -8.11581 -6.21734 -0.26096 1.34577 1.38605 1.39403 1.46898 1.73637 1.90228 2.39645 2.94672 3.01275 3.15896 3.25516 3.42881 3.52028 3.69670 3.83393 4.07213 4.14389 4.15290 4.28942 4.32348 4.34269 4.53377 4.55225 4.59481 4.59735 4.65475 4.70758 4.72938 4.76571 4.81528 4.87638 4.89121 4.92810 4.94213 4.98853 4.99280 5.07709 5.23430 5.25833 5.31084 5.37273 5.41464 5.45097 5.67592 5.72463 5.84784 5.86506 6.03577 6.19292 6.30865 6.58716 6.71617 6.88791 7.45747 8.93818 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013449 B = 0.003120 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.482019 B = 8971.357394 C =10215.975304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.105 4.105 3 C 0.217 3.783 4 H -0.046 1.046 5 C -0.508 4.508 6 H 0.051 0.949 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.949 3.051 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.269 1.269 13 N -0.503 5.503 14 C 0.030 3.970 15 C -0.096 4.096 16 C 0.061 3.939 17 C -0.110 4.110 18 C 0.052 3.948 19 C 0.585 3.415 20 O -0.546 6.546 21 N -0.585 5.585 22 C 0.062 3.938 23 C 0.122 3.878 24 C -0.155 4.155 25 C -0.157 4.157 26 N -0.244 5.244 27 O -0.198 6.198 28 C 0.050 3.950 29 H 0.057 0.943 30 H 0.029 0.971 31 H 0.040 0.960 32 H 0.060 0.940 33 H 0.031 0.969 34 H 0.261 0.739 35 H 0.095 0.905 36 H 0.022 0.978 37 H 0.100 0.900 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.137 0.863 41 H 0.059 0.941 42 H 0.107 0.893 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.073 0.927 46 H 0.090 0.910 47 H 0.052 0.948 48 H 0.071 0.929 49 H 0.042 0.958 50 H 0.090 0.910 51 H 0.019 0.981 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.780 16.483 16.871 23.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.143 4.143 3 C 0.110 3.890 4 H -0.028 1.028 5 C -0.546 4.546 6 H 0.069 0.931 7 C -0.183 4.183 8 N -0.557 5.557 9 Si 0.775 3.225 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.194 1.194 13 N -0.228 5.228 14 C -0.098 4.098 15 C -0.134 4.134 16 C 0.020 3.980 17 C -0.150 4.150 18 C -0.142 4.142 19 C 0.370 3.630 20 O -0.422 6.422 21 N -0.317 5.317 22 C -0.080 4.080 23 C 0.021 3.979 24 C -0.213 4.213 25 C -0.215 4.215 26 N 0.008 4.992 27 O -0.216 6.216 28 C -0.079 4.079 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.113 0.887 36 H 0.041 0.959 37 H 0.118 0.882 38 H 0.135 0.865 39 H 0.131 0.869 40 H 0.155 0.845 41 H 0.077 0.923 42 H 0.125 0.875 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.092 0.908 46 H 0.109 0.891 47 H 0.071 0.929 48 H 0.090 0.910 49 H 0.061 0.939 50 H 0.109 0.891 51 H 0.038 0.962 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.914 16.641 16.622 23.598 hybrid contribution 0.215 -0.276 -1.572 1.610 sum 2.130 16.365 15.050 22.335 Atomic orbital electron populations 1.21321 0.95459 0.98842 1.00928 1.21398 0.96677 0.96850 0.99423 1.19224 0.90136 0.92293 0.87327 1.02832 1.21186 1.30922 1.11635 0.90862 0.93083 1.25592 0.95447 0.95730 1.01512 1.70003 1.37976 1.23960 1.23803 0.85750 0.79043 0.78532 0.79185 1.20302 1.20857 1.19443 1.64980 1.54670 1.00596 1.02543 1.23343 0.97896 0.98195 0.90319 1.22511 1.04434 0.89606 0.96891 1.23095 0.81949 0.97136 0.95812 1.22819 0.98932 0.86453 1.06751 1.26203 0.94285 0.96753 0.96964 1.17080 0.85437 0.82862 0.77660 1.90813 1.19639 1.80418 1.51368 1.48061 1.07218 1.07088 1.69351 1.22349 0.79792 1.02724 1.03092 1.21430 1.01679 0.77376 0.97448 1.22124 1.01884 1.02224 0.95025 1.22130 1.02018 1.01213 0.96173 1.78626 1.20430 0.91706 1.08399 1.91116 1.28466 1.12252 1.89801 1.22814 0.98059 0.93390 0.93651 0.92368 0.95154 0.94122 0.92118 0.95047 0.93024 0.88669 0.95929 0.88173 0.86474 0.86853 0.84480 0.92284 0.87489 0.89485 0.89382 0.90776 0.89146 0.92885 0.90981 0.93915 0.89075 0.96208 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.64 9.48 71.98 0.68 -3.96 16 2 C -0.10 -5.03 5.23 30.60 0.16 -4.87 16 3 C 0.22 11.11 1.44 44.17 0.06 11.17 16 4 H -0.05 -2.71 8.00 -2.39 -0.02 -2.72 16 5 C -0.51 -28.09 6.94 25.60 0.18 -27.92 16 6 H 0.05 2.85 7.38 -2.91 -0.02 2.83 16 7 C 0.02 0.89 5.30 84.65 0.45 1.34 16 8 N -0.92 -53.45 11.31 21.45 0.24 -53.21 16 9 Si 0.95 44.59 29.54 68.60 2.03 46.62 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 N -0.50 -21.10 4.27 -862.86 -3.69 -24.79 16 14 C 0.03 1.04 5.45 86.72 0.47 1.51 16 15 C -0.10 -2.50 6.32 31.47 0.20 -2.30 16 16 C 0.06 1.88 1.23 -10.58 -0.01 1.87 16 17 C -0.11 -2.83 5.90 30.43 0.18 -2.65 16 18 C 0.05 1.41 7.03 45.83 0.32 1.73 16 19 C 0.58 15.32 7.68 86.72 0.67 15.99 16 20 O -0.55 -16.90 16.30 -3.89 -0.06 -16.97 16 21 N -0.58 -11.77 2.76 -826.30 -2.28 -14.05 16 22 C 0.06 1.05 8.63 127.77 1.10 2.15 16 23 C 0.12 1.91 3.24 44.99 0.15 2.06 16 24 C -0.15 -1.56 9.18 71.98 0.66 -0.90 16 25 C -0.16 -2.00 9.19 71.98 0.66 -1.34 16 26 N -0.24 -7.09 8.98 -42.00 -0.38 -7.47 16 27 O -0.20 -6.60 11.91 -39.09 -0.47 -7.07 16 28 C 0.05 2.00 5.29 85.97 0.46 2.46 16 29 H 0.06 2.33 7.46 -2.39 -0.02 2.31 16 30 H 0.03 1.42 7.40 -2.38 -0.02 1.40 16 31 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 3.31 6.06 -2.39 -0.01 3.29 16 33 H 0.03 1.35 6.96 -2.39 -0.02 1.34 16 34 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16 35 H 0.10 2.96 7.69 -2.39 -0.02 2.94 16 36 H 0.02 0.85 7.98 -2.38 -0.02 0.83 16 37 H 0.10 2.25 8.08 -2.39 -0.02 2.23 16 38 H 0.12 2.44 7.85 -2.38 -0.02 2.42 16 39 H 0.11 3.03 7.44 -2.39 -0.02 3.01 16 40 H 0.14 2.69 7.85 -2.39 -0.02 2.67 16 41 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.11 1.11 6.44 -2.39 -0.02 1.09 16 43 H 0.09 1.72 5.36 -2.39 -0.01 1.70 16 44 H 0.09 1.70 6.90 -2.39 -0.02 1.68 16 45 H 0.07 0.57 6.67 -2.39 -0.02 0.56 16 46 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 48 H 0.07 0.76 7.67 -2.39 -0.02 0.74 16 49 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.02 0.93 7.60 -2.39 -0.02 0.92 16 52 H 0.07 2.97 7.16 -2.39 -0.02 2.96 16 Total: -1.00 -68.17 399.06 2.68 -65.49 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.90 Total: 15.10 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 6.39 Total: -3.66 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -6.10 Total: -99.52 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.53 Total: -24.03 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -68.17 2.68 -65.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167444.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.166 kcal (2) G-P(sol) polarization free energy of solvation -68.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds