Wall clock time and date at job start Tue Mar 31 2020 20:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46798 * 2 1 4 4 H 1.09002 * 109.46847 * 180.71267 * 3 2 1 5 5 C 1.50698 * 109.47372 * 60.71262 * 3 2 1 6 6 H 1.07996 * 120.00023 * 239.99505 * 5 3 2 7 7 C 1.37880 * 119.99543 * 60.00007 * 5 3 2 8 8 N 1.31514 * 120.00445 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99637 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47226 * 59.99785 * 9 7 5 11 11 H 1.48501 * 109.47253 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47207 * 299.99738 * 9 7 5 13 13 N 1.46902 * 109.47065 * 300.71153 * 3 2 1 14 14 C 1.48676 * 111.00058 * 302.95886 * 13 3 2 15 15 C 1.54699 * 104.63607 * 201.61000 * 14 13 3 16 16 C 1.53000 * 104.58214 * 23.67058 * 15 14 13 17 17 C 1.53503 * 111.56886 * 121.37174 * 16 15 14 18 18 C 1.51971 * 102.21766 * 143.50039 * 17 16 15 19 19 C 1.47601 * 125.85779 * 165.67766 * 18 17 16 20 20 O 1.21547 * 120.00271 * 354.08517 * 19 18 17 21 21 N 1.34773 * 119.99380 * 174.08212 * 19 18 17 22 22 C 1.46496 * 120.00587 * 3.33878 * 21 19 18 23 23 C 1.46502 * 119.99714 * 183.34405 * 21 19 18 24 24 C 1.53004 * 109.47287 * 119.99946 * 23 21 19 25 25 C 1.53002 * 109.47212 * 239.99915 * 23 21 19 26 26 N 1.29180 * 108.27622 * 345.71714 * 18 17 16 27 27 O 1.41742 * 112.89093 * 359.74838 * 26 18 17 28 28 C 1.48859 * 111.00058 * 187.29300 * 13 3 2 29 29 H 1.08999 * 109.47012 * 294.97911 * 1 2 3 30 30 H 1.08997 * 109.46830 * 54.97878 * 1 2 3 31 31 H 1.08994 * 109.46943 * 174.97328 * 1 2 3 32 32 H 1.08998 * 109.47494 * 240.00059 * 2 1 3 33 33 H 1.08997 * 109.47399 * 119.99511 * 2 1 3 34 34 H 0.96997 * 119.99906 * 179.97438 * 8 7 5 35 35 H 1.09001 * 110.40203 * 82.81906 * 14 13 3 36 36 H 1.08999 * 110.50552 * 320.45550 * 14 13 3 37 37 H 1.09002 * 110.41272 * 264.89102 * 15 14 13 38 38 H 1.09001 * 110.51262 * 142.49741 * 15 14 13 39 39 H 1.08999 * 110.85359 * 25.31288 * 17 16 15 40 40 H 1.09000 * 110.84988 * 261.68363 * 17 16 15 41 41 H 1.09001 * 109.46730 * 84.27537 * 22 21 19 42 42 H 1.09003 * 109.47854 * 204.27744 * 22 21 19 43 43 H 1.09002 * 109.46955 * 324.28296 * 22 21 19 44 44 H 1.09004 * 109.46921 * 359.97438 * 23 21 19 45 45 H 1.08999 * 109.46919 * 299.99616 * 24 23 21 46 46 H 1.08995 * 109.46898 * 59.99684 * 24 23 21 47 47 H 1.08998 * 109.46833 * 180.02562 * 24 23 21 48 48 H 1.09006 * 109.47119 * 59.99597 * 25 23 21 49 49 H 1.08998 * 109.47397 * 179.97438 * 25 23 21 50 50 H 1.08995 * 109.46956 * 300.00305 * 25 23 21 51 51 H 1.08999 * 110.46417 * 39.27682 * 28 13 3 52 52 H 1.08994 * 110.46700 * 276.68665 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1299 1.4426 -0.0128 5 6 1.5521 2.1479 1.2392 6 1 0.9302 3.0264 1.1510 7 6 1.8999 1.6716 2.4855 8 7 2.6570 0.6016 2.5929 9 14 1.2946 2.5454 4.0215 10 1 -0.1903 2.5448 4.0387 11 1 1.8034 1.8402 5.2252 12 1 1.7891 3.9457 4.0218 13 7 1.5362 2.1400 -1.1908 14 6 1.9391 1.4308 -2.4339 15 6 1.8518 2.5058 -3.5429 16 6 1.9974 3.8365 -2.8019 17 6 3.1985 4.6412 -3.3178 18 6 2.6841 6.0693 -3.2445 19 6 3.5076 7.2908 -3.3372 20 8 4.7194 7.2052 -3.3774 21 7 2.9157 8.5009 -3.3772 22 6 1.4599 8.6089 -3.2551 23 6 3.7284 9.7086 -3.5429 24 6 3.3035 10.4382 -4.8188 25 6 3.5258 10.6290 -2.3376 26 7 1.4026 6.0307 -3.0865 27 8 0.8926 4.7091 -3.0382 28 6 2.1507 3.4898 -1.3183 29 1 -0.3633 0.4340 0.9315 30 1 -0.3633 0.5897 -0.8416 31 1 -0.3633 -1.0237 -0.0900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 2.9020 0.2668 3.4697 35 1 1.2515 0.6115 -2.6438 36 1 2.9592 1.0568 -2.3465 37 1 0.8866 2.4548 -4.0467 38 1 2.6619 2.3801 -4.2613 39 1 3.4369 4.3668 -4.3454 40 1 4.0635 4.5065 -2.6684 41 1 1.1829 8.6117 -2.2009 42 1 1.1237 9.5349 -3.7216 43 1 0.9897 7.7601 -3.7519 44 1 4.7802 9.4316 -3.6154 45 1 3.4479 9.7825 -5.6775 46 1 2.2518 10.7151 -4.7459 47 1 3.9084 11.3365 -4.9423 48 1 3.8285 10.1092 -1.4285 49 1 4.1307 11.5273 -2.4606 50 1 2.4741 10.9059 -2.2646 51 1 3.2045 3.4565 -1.0415 52 1 1.6162 4.2118 -0.7009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255167445.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:47 Heat of formation + Delta-G solvation = 8.899090 kcal Electronic energy + Delta-G solvation = -30876.912570 eV Core-core repulsion = 26879.366346 eV Total energy + Delta-G solvation = -3997.546225 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.09296 -39.92812 -37.60688 -36.80608 -34.40498 -33.51178 -32.06429 -31.60322 -30.13065 -29.13607 -27.59306 -27.29101 -26.34434 -25.47335 -24.64364 -23.08915 -21.61756 -20.99081 -20.40036 -19.10060 -18.85911 -17.31052 -16.78639 -16.16764 -16.10097 -15.79569 -15.34650 -15.20286 -14.70919 -14.38961 -14.14462 -14.10801 -13.82329 -13.46815 -13.32801 -13.28497 -13.02347 -12.71252 -12.62678 -12.54395 -12.39233 -12.22912 -11.89452 -11.76509 -11.67797 -11.62956 -11.37425 -11.23673 -11.18536 -10.89522 -10.69547 -10.67782 -10.60839 -10.40351 -10.29571 -9.94477 -9.77031 -9.58282 -9.27230 -9.04712 -8.88459 -8.41195 -7.38129 -6.01092 -4.04594 0.84808 2.34007 2.79535 2.99980 3.32437 3.36710 3.40251 3.96656 4.25406 4.36824 4.44014 4.49319 4.68177 4.69081 4.83252 4.91120 5.00266 5.11158 5.17163 5.19757 5.27347 5.31366 5.36895 5.38196 5.44889 5.54978 5.56614 5.68542 5.74233 5.82638 5.83838 5.86454 5.95783 6.11866 6.21635 6.26090 6.35115 6.43805 6.50721 6.60600 6.75886 6.86790 7.04153 7.13467 7.21634 7.31607 7.56687 7.68648 7.71636 7.83205 8.01810 8.29248 8.50915 9.00150 9.59540 11.05401 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013570 B = 0.003090 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.806214 B = 9060.148401 C =10288.881785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.111 4.111 3 C 0.207 3.793 4 H 0.000 1.000 5 C -0.496 4.496 6 H 0.060 0.940 7 C 0.061 3.939 8 N -0.893 5.893 9 Si 0.893 3.107 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.493 5.493 14 C 0.032 3.968 15 C -0.112 4.112 16 C 0.066 3.934 17 C -0.120 4.120 18 C 0.044 3.956 19 C 0.590 3.410 20 O -0.520 6.520 21 N -0.593 5.593 22 C 0.063 3.937 23 C 0.129 3.871 24 C -0.162 4.162 25 C -0.162 4.162 26 N -0.241 5.241 27 O -0.163 6.163 28 C 0.044 3.956 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.015 0.985 32 H 0.013 0.987 33 H 0.092 0.908 34 H 0.261 0.739 35 H 0.080 0.920 36 H 0.038 0.962 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.071 0.929 48 H 0.061 0.939 49 H 0.070 0.930 50 H 0.060 0.940 51 H 0.052 0.948 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.873 14.982 -15.299 21.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.149 4.149 3 C 0.101 3.899 4 H 0.018 0.982 5 C -0.535 4.535 6 H 0.078 0.922 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.218 5.218 14 C -0.096 4.096 15 C -0.151 4.151 16 C 0.025 3.975 17 C -0.160 4.160 18 C -0.150 4.150 19 C 0.376 3.624 20 O -0.393 6.393 21 N -0.327 5.327 22 C -0.080 4.080 23 C 0.027 3.973 24 C -0.220 4.220 25 C -0.220 4.220 26 N 0.014 4.986 27 O -0.184 6.184 28 C -0.085 4.085 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.032 0.968 33 H 0.111 0.889 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.124 0.876 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.081 0.919 49 H 0.089 0.911 50 H 0.079 0.921 51 H 0.070 0.930 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.063 15.362 -14.997 21.469 hybrid contribution 1.180 -0.190 0.924 1.510 sum 1.117 15.172 -14.074 20.725 Atomic orbital electron populations 1.21476 0.97191 0.97332 1.01963 1.21558 0.95288 0.97900 1.00203 1.19481 0.92770 0.91148 0.86505 0.98203 1.20971 1.31065 1.11913 0.89521 0.92184 1.24887 0.95183 0.95080 0.98896 1.69858 1.36786 1.22758 1.23863 0.86632 0.79277 0.79618 0.82346 1.20165 1.21379 1.20426 1.65622 1.53553 1.00603 1.02039 1.23123 0.99245 0.96460 0.90818 1.22324 1.03177 0.91645 0.97906 1.23051 0.84491 0.91966 0.97984 1.22876 1.01044 0.87314 1.04734 1.25901 0.93428 0.97027 0.98670 1.17046 0.86520 0.81557 0.77310 1.90821 1.12815 1.85996 1.49707 1.47866 1.08653 1.05452 1.70743 1.22281 0.78491 1.04124 1.03057 1.21200 0.96968 0.83808 0.95368 1.22163 1.02149 1.00644 0.97025 1.22149 1.02531 0.99404 0.97904 1.78514 1.10975 1.02418 1.06647 1.91164 1.27874 1.09333 1.90000 1.23133 0.98723 0.95123 0.91520 0.92604 0.93474 0.96558 0.96813 0.88927 0.92940 0.90179 0.94327 0.89613 0.90537 0.87626 0.86969 0.91757 0.90698 0.88342 0.87769 0.92116 0.92006 0.91035 0.91945 0.91125 0.92060 0.93010 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 9.49 37.16 0.35 -2.34 16 2 C -0.11 -2.62 5.13 -26.73 -0.14 -2.75 16 3 C 0.21 5.07 1.54 -68.86 -0.11 4.96 16 4 H 0.00 0.01 7.94 -51.93 -0.41 -0.40 16 5 C -0.50 -13.34 7.08 -34.44 -0.24 -13.59 16 6 H 0.06 1.66 7.46 -52.49 -0.39 1.26 16 7 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 8 N -0.89 -25.10 11.31 55.43 0.63 -24.48 16 9 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.49 -10.34 4.31 -223.63 -0.96 -11.30 16 14 C 0.03 0.55 5.24 -1.95 -0.01 0.54 16 15 C -0.11 -1.59 6.49 -25.84 -0.17 -1.75 16 16 C 0.07 1.04 1.29 -90.29 -0.12 0.92 16 17 C -0.12 -1.61 5.98 -26.99 -0.16 -1.78 16 18 C 0.04 0.60 7.03 -79.26 -0.56 0.04 16 19 C 0.59 7.90 7.68 -12.44 -0.10 7.80 16 20 O -0.52 -8.12 16.29 5.32 0.09 -8.03 16 21 N -0.59 -6.29 2.76 -175.14 -0.48 -6.78 16 22 C 0.06 0.57 8.65 59.84 0.52 1.09 16 23 C 0.13 1.11 3.24 -67.93 -0.22 0.89 16 24 C -0.16 -1.03 9.18 37.16 0.34 -0.69 16 25 C -0.16 -1.17 9.19 37.16 0.34 -0.83 16 26 N -0.24 -3.51 8.97 35.37 0.32 -3.20 16 27 O -0.16 -2.72 11.92 -11.54 -0.14 -2.86 16 28 C 0.04 0.85 5.27 -2.67 -0.01 0.83 16 29 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 30 H 0.05 1.00 7.43 -51.93 -0.39 0.62 16 31 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.01 0.29 6.93 -51.93 -0.36 -0.07 16 33 H 0.09 2.44 6.05 -51.93 -0.31 2.13 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.08 1.35 7.72 -51.93 -0.40 0.94 16 36 H 0.04 0.67 7.99 -51.93 -0.41 0.25 16 37 H 0.09 1.19 8.03 -51.93 -0.42 0.77 16 38 H 0.08 0.88 7.45 -51.93 -0.39 0.49 16 39 H 0.11 1.19 7.59 -51.93 -0.39 0.80 16 40 H 0.11 1.53 7.48 -51.93 -0.39 1.14 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.49 6.44 -51.93 -0.33 0.16 16 43 H 0.10 1.02 5.34 -51.93 -0.28 0.75 16 44 H 0.10 1.04 6.90 -51.93 -0.36 0.68 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.35 6.67 -51.93 -0.35 0.00 16 47 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 51 H 0.05 1.03 7.21 -51.93 -0.37 0.65 16 52 H 0.09 1.83 7.77 -51.93 -0.40 1.43 16 LS Contribution 398.87 15.07 6.01 6.01 Total: -1.00 -30.09 398.87 -8.75 -38.84 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -8.82 Total: 0.49 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -0.37 Total: -5.09 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -0.50 Total: -45.75 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -0.05 Total: -10.89 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.09 -8.75 -38.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167445.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.742 kcal (2) G-P(sol) polarization free energy of solvation -30.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds