Wall clock time and date at job start Tue Mar 31 2020 20:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46798 * 2 1 4 4 H 1.09002 * 109.46847 * 180.71267 * 3 2 1 5 5 C 1.50698 * 109.47372 * 60.71262 * 3 2 1 6 6 H 1.07996 * 120.00023 * 239.99505 * 5 3 2 7 7 C 1.37880 * 119.99543 * 60.00007 * 5 3 2 8 8 N 1.31514 * 120.00445 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99637 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47226 * 59.99785 * 9 7 5 11 11 H 1.48501 * 109.47253 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47207 * 299.99738 * 9 7 5 13 13 N 1.46902 * 109.47065 * 300.71153 * 3 2 1 14 14 C 1.48676 * 111.00058 * 302.95886 * 13 3 2 15 15 C 1.54699 * 104.63607 * 201.61000 * 14 13 3 16 16 C 1.53000 * 104.58214 * 23.67058 * 15 14 13 17 17 C 1.53503 * 111.56886 * 121.37174 * 16 15 14 18 18 C 1.51971 * 102.21766 * 143.50039 * 17 16 15 19 19 C 1.47601 * 125.85779 * 165.67766 * 18 17 16 20 20 O 1.21547 * 120.00271 * 354.08517 * 19 18 17 21 21 N 1.34773 * 119.99380 * 174.08212 * 19 18 17 22 22 C 1.46496 * 120.00587 * 3.33878 * 21 19 18 23 23 C 1.46502 * 119.99714 * 183.34405 * 21 19 18 24 24 C 1.53004 * 109.47287 * 119.99946 * 23 21 19 25 25 C 1.53002 * 109.47212 * 239.99915 * 23 21 19 26 26 N 1.29180 * 108.27622 * 345.71714 * 18 17 16 27 27 O 1.41742 * 112.89093 * 359.74838 * 26 18 17 28 28 C 1.48859 * 111.00058 * 187.29300 * 13 3 2 29 29 H 1.08999 * 109.47012 * 294.97911 * 1 2 3 30 30 H 1.08997 * 109.46830 * 54.97878 * 1 2 3 31 31 H 1.08994 * 109.46943 * 174.97328 * 1 2 3 32 32 H 1.08998 * 109.47494 * 240.00059 * 2 1 3 33 33 H 1.08997 * 109.47399 * 119.99511 * 2 1 3 34 34 H 0.96997 * 119.99906 * 179.97438 * 8 7 5 35 35 H 1.09001 * 110.40203 * 82.81906 * 14 13 3 36 36 H 1.08999 * 110.50552 * 320.45550 * 14 13 3 37 37 H 1.09002 * 110.41272 * 264.89102 * 15 14 13 38 38 H 1.09001 * 110.51262 * 142.49741 * 15 14 13 39 39 H 1.08999 * 110.85359 * 25.31288 * 17 16 15 40 40 H 1.09000 * 110.84988 * 261.68363 * 17 16 15 41 41 H 1.09001 * 109.46730 * 84.27537 * 22 21 19 42 42 H 1.09003 * 109.47854 * 204.27744 * 22 21 19 43 43 H 1.09002 * 109.46955 * 324.28296 * 22 21 19 44 44 H 1.09004 * 109.46921 * 359.97438 * 23 21 19 45 45 H 1.08999 * 109.46919 * 299.99616 * 24 23 21 46 46 H 1.08995 * 109.46898 * 59.99684 * 24 23 21 47 47 H 1.08998 * 109.46833 * 180.02562 * 24 23 21 48 48 H 1.09006 * 109.47119 * 59.99597 * 25 23 21 49 49 H 1.08998 * 109.47397 * 179.97438 * 25 23 21 50 50 H 1.08995 * 109.46956 * 300.00305 * 25 23 21 51 51 H 1.08999 * 110.46417 * 39.27682 * 28 13 3 52 52 H 1.08994 * 110.46700 * 276.68665 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1299 1.4426 -0.0128 5 6 1.5521 2.1479 1.2392 6 1 0.9302 3.0264 1.1510 7 6 1.8999 1.6716 2.4855 8 7 2.6570 0.6016 2.5929 9 14 1.2946 2.5454 4.0215 10 1 -0.1903 2.5448 4.0387 11 1 1.8034 1.8402 5.2252 12 1 1.7891 3.9457 4.0218 13 7 1.5362 2.1400 -1.1908 14 6 1.9391 1.4308 -2.4339 15 6 1.8518 2.5058 -3.5429 16 6 1.9974 3.8365 -2.8019 17 6 3.1985 4.6412 -3.3178 18 6 2.6841 6.0693 -3.2445 19 6 3.5076 7.2908 -3.3372 20 8 4.7194 7.2052 -3.3774 21 7 2.9157 8.5009 -3.3772 22 6 1.4599 8.6089 -3.2551 23 6 3.7284 9.7086 -3.5429 24 6 3.3035 10.4382 -4.8188 25 6 3.5258 10.6290 -2.3376 26 7 1.4026 6.0307 -3.0865 27 8 0.8926 4.7091 -3.0382 28 6 2.1507 3.4898 -1.3183 29 1 -0.3633 0.4340 0.9315 30 1 -0.3633 0.5897 -0.8416 31 1 -0.3633 -1.0237 -0.0900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 2.9020 0.2668 3.4697 35 1 1.2515 0.6115 -2.6438 36 1 2.9592 1.0568 -2.3465 37 1 0.8866 2.4548 -4.0467 38 1 2.6619 2.3801 -4.2613 39 1 3.4369 4.3668 -4.3454 40 1 4.0635 4.5065 -2.6684 41 1 1.1829 8.6117 -2.2009 42 1 1.1237 9.5349 -3.7216 43 1 0.9897 7.7601 -3.7519 44 1 4.7802 9.4316 -3.6154 45 1 3.4479 9.7825 -5.6775 46 1 2.2518 10.7151 -4.7459 47 1 3.9084 11.3365 -4.9423 48 1 3.8285 10.1092 -1.4285 49 1 4.1307 11.5273 -2.4606 50 1 2.4741 10.9059 -2.2646 51 1 3.2045 3.4565 -1.0415 52 1 1.6162 4.2118 -0.7009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167445.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:46 Heat of formation + Delta-G solvation = -9.438493 kcal Electronic energy + Delta-G solvation = -30877.707748 eV Core-core repulsion = 26879.366346 eV Total energy + Delta-G solvation = -3998.341402 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.25073 -40.99672 -39.12965 -37.70321 -36.06795 -34.66571 -33.52448 -32.91628 -31.68476 -30.51160 -28.20644 -28.14208 -28.07644 -27.00720 -25.65180 -24.86918 -23.17380 -21.97686 -21.56179 -20.65645 -20.00235 -18.35973 -18.22656 -17.84307 -17.17569 -17.05255 -16.78770 -16.50785 -16.11244 -15.58245 -15.39334 -15.14397 -15.08895 -14.88535 -14.62438 -14.31472 -14.22045 -13.91541 -13.80029 -13.51669 -13.47303 -13.39992 -13.22378 -13.03596 -12.91698 -12.88131 -12.79164 -12.61510 -12.44664 -12.37273 -12.27032 -11.96454 -11.89821 -11.75920 -11.70453 -11.60945 -11.37111 -11.32305 -10.87903 -10.64570 -10.48745 -9.91462 -9.10671 -8.11559 -6.21141 -0.25049 1.36246 1.38117 1.39241 1.46713 1.74056 1.91791 2.39879 2.95088 3.06559 3.12059 3.18644 3.41635 3.63544 3.71028 3.82955 4.07193 4.13138 4.16207 4.20601 4.29102 4.39410 4.49945 4.56607 4.58035 4.60705 4.63653 4.68111 4.72680 4.73114 4.81259 4.82444 4.88976 4.89335 4.94778 4.98707 5.00020 5.10526 5.23623 5.24045 5.31161 5.36088 5.41435 5.43726 5.67510 5.72174 5.83408 5.88937 6.05054 6.21025 6.31501 6.60999 6.71887 6.89106 7.46314 8.93498 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013570 B = 0.003090 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.806214 B = 9060.148401 C =10288.881785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.106 4.106 3 C 0.215 3.785 4 H -0.036 1.036 5 C -0.507 4.507 6 H 0.045 0.955 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 0.947 3.053 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.277 1.277 13 N -0.506 5.506 14 C 0.029 3.971 15 C -0.100 4.100 16 C 0.072 3.928 17 C -0.117 4.117 18 C 0.049 3.951 19 C 0.584 3.416 20 O -0.549 6.549 21 N -0.585 5.585 22 C 0.062 3.938 23 C 0.122 3.878 24 C -0.155 4.155 25 C -0.157 4.157 26 N -0.243 5.243 27 O -0.185 6.185 28 C 0.045 3.955 29 H 0.028 0.972 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.034 0.966 33 H 0.062 0.938 34 H 0.261 0.739 35 H 0.088 0.912 36 H 0.037 0.963 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.138 0.862 40 H 0.108 0.892 41 H 0.059 0.941 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.052 0.948 46 H 0.074 0.926 47 H 0.090 0.910 48 H 0.041 0.959 49 H 0.090 0.910 50 H 0.072 0.928 51 H 0.039 0.961 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.221 16.378 -17.213 23.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.145 4.145 3 C 0.108 3.892 4 H -0.018 1.018 5 C -0.545 4.545 6 H 0.063 0.937 7 C -0.181 4.181 8 N -0.556 5.556 9 Si 0.773 3.227 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.203 1.203 13 N -0.230 5.230 14 C -0.099 4.099 15 C -0.138 4.138 16 C 0.031 3.969 17 C -0.157 4.157 18 C -0.145 4.145 19 C 0.369 3.631 20 O -0.425 6.425 21 N -0.317 5.317 22 C -0.080 4.080 23 C 0.020 3.980 24 C -0.212 4.212 25 C -0.215 4.215 26 N 0.011 4.989 27 O -0.204 6.204 28 C -0.084 4.084 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.056 0.944 37 H 0.114 0.886 38 H 0.131 0.869 39 H 0.156 0.844 40 H 0.126 0.874 41 H 0.078 0.922 42 H 0.125 0.875 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.071 0.929 46 H 0.093 0.907 47 H 0.108 0.892 48 H 0.061 0.939 49 H 0.109 0.891 50 H 0.091 0.909 51 H 0.057 0.943 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.753 16.774 -16.924 23.840 hybrid contribution 1.404 -0.528 1.511 2.129 sum 0.651 16.246 -15.413 22.403 Atomic orbital electron populations 1.21333 0.95864 0.98781 1.00726 1.21428 0.96333 0.97027 0.99695 1.19226 0.90501 0.92013 0.87451 1.01819 1.21157 1.30740 1.11597 0.91022 0.93668 1.25547 0.95404 0.95732 1.01422 1.69976 1.37588 1.23708 1.24317 0.85778 0.78855 0.78631 0.79403 1.19802 1.20697 1.20254 1.65484 1.53750 1.01387 1.02414 1.23219 0.99266 0.97479 0.89975 1.22332 1.05273 0.89035 0.97157 1.22909 0.85464 0.93163 0.95389 1.22901 0.99764 0.86675 1.06320 1.26124 0.93272 0.97654 0.97409 1.17097 0.86146 0.82192 0.77631 1.90807 1.13782 1.86380 1.51559 1.48059 1.09531 1.05250 1.68839 1.22368 0.77374 1.05300 1.02974 1.21428 0.95893 0.83300 0.97340 1.22122 1.03260 1.00790 0.95068 1.22129 1.03640 0.99538 0.96213 1.78609 1.11293 1.01162 1.07840 1.91147 1.28714 1.10392 1.90157 1.23034 0.97231 0.93868 0.94261 0.95281 0.92810 0.94019 0.94723 0.91906 0.92977 0.89402 0.94440 0.88609 0.86860 0.84445 0.87380 0.92212 0.87504 0.89354 0.89490 0.92909 0.90711 0.89172 0.93944 0.89102 0.90909 0.94289 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.79 9.49 71.98 0.68 -4.11 16 2 C -0.11 -5.06 5.13 30.60 0.16 -4.90 16 3 C 0.22 10.86 1.54 44.17 0.07 10.93 16 4 H -0.04 -2.01 7.94 -2.39 -0.02 -2.03 16 5 C -0.51 -28.21 7.08 25.60 0.18 -28.03 16 6 H 0.05 2.59 7.46 -2.91 -0.02 2.57 16 7 C 0.02 0.99 5.30 84.66 0.45 1.44 16 8 N -0.92 -52.82 11.31 21.45 0.24 -52.58 16 9 Si 0.95 44.74 29.54 68.60 2.03 46.76 16 10 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 N -0.51 -21.49 4.31 -861.44 -3.71 -25.20 16 14 C 0.03 0.95 5.24 86.54 0.45 1.40 16 15 C -0.10 -2.58 6.49 31.17 0.20 -2.38 16 16 C 0.07 2.20 1.29 -10.58 -0.01 2.18 16 17 C -0.12 -3.01 5.98 30.42 0.18 -2.83 16 18 C 0.05 1.34 7.03 45.83 0.32 1.66 16 19 C 0.58 15.38 7.68 86.72 0.67 16.05 16 20 O -0.55 -17.16 16.29 -3.86 -0.06 -17.22 16 21 N -0.58 -11.76 2.76 -826.31 -2.28 -14.04 16 22 C 0.06 1.02 8.65 127.77 1.10 2.13 16 23 C 0.12 1.92 3.24 44.99 0.15 2.06 16 24 C -0.15 -1.56 9.18 71.98 0.66 -0.90 16 25 C -0.16 -2.00 9.19 71.98 0.66 -1.34 16 26 N -0.24 -6.95 8.97 -42.00 -0.38 -7.32 16 27 O -0.19 -6.08 11.92 -39.10 -0.47 -6.54 16 28 C 0.04 1.79 5.27 85.97 0.45 2.25 16 29 H 0.03 1.39 7.42 -2.39 -0.02 1.37 16 30 H 0.05 2.24 7.43 -2.39 -0.02 2.23 16 31 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.03 1.46 6.93 -2.39 -0.02 1.45 16 33 H 0.06 3.38 6.05 -2.39 -0.01 3.37 16 34 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 35 H 0.09 2.77 7.72 -2.39 -0.02 2.75 16 36 H 0.04 1.26 7.99 -2.39 -0.02 1.24 16 37 H 0.10 2.36 8.03 -2.39 -0.02 2.34 16 38 H 0.11 2.15 7.45 -2.39 -0.02 2.13 16 39 H 0.14 2.69 7.59 -2.39 -0.02 2.67 16 40 H 0.11 2.92 7.48 -2.39 -0.02 2.90 16 41 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.11 1.08 6.44 -2.39 -0.02 1.07 16 43 H 0.09 1.72 5.34 -2.39 -0.01 1.71 16 44 H 0.09 1.70 6.90 -2.39 -0.02 1.68 16 45 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.07 0.57 6.67 -2.39 -0.02 0.56 16 47 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 49 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.07 0.76 7.67 -2.39 -0.02 0.75 16 51 H 0.04 1.63 7.21 -2.39 -0.02 1.61 16 52 H 0.06 2.54 7.77 -2.39 -0.02 2.52 16 Total: -1.00 -67.77 398.87 2.65 -65.12 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.90 Total: 15.41 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 6.38 Total: -4.39 kcal Atomic # 7 Polarization: -93.02 SS G_CDS: -6.13 Total: -99.15 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.53 Total: -23.77 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -67.77 2.65 -65.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167445.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.685 kcal (2) G-P(sol) polarization free energy of solvation -67.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds