Wall clock time and date at job start Tue Mar 31 2020 20:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47178 * 2 1 4 4 H 1.08992 * 109.47544 * 55.00640 * 3 2 1 5 5 C 1.50710 * 109.46909 * 175.00201 * 3 2 1 6 6 H 1.08001 * 120.00011 * 120.00217 * 5 3 2 7 7 C 1.37877 * 119.99870 * 300.00142 * 5 3 2 8 8 N 1.31515 * 119.99842 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99920 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46967 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47252 * 119.99935 * 9 7 5 12 12 H 1.48501 * 109.47083 * 240.00185 * 9 7 5 13 13 N 1.46903 * 109.47605 * 294.99685 * 3 2 1 14 14 C 1.48650 * 111.00135 * 297.45685 * 13 3 2 15 15 C 1.55220 * 103.39420 * 200.98326 * 14 13 3 16 16 C 1.53351 * 102.60375 * 36.35042 * 15 14 13 17 17 C 1.53508 * 111.34243 * 216.90524 * 16 15 14 18 18 C 1.51967 * 102.22353 * 216.91056 * 17 16 15 19 19 C 1.47600 * 125.85668 * 194.24454 * 18 17 16 20 20 O 1.21546 * 120.00525 * 353.62383 * 19 18 17 21 21 N 1.34780 * 119.99647 * 173.63658 * 19 18 17 22 22 C 1.46501 * 119.99862 * 3.35253 * 21 19 18 23 23 C 1.46501 * 119.99890 * 183.36007 * 21 19 18 24 24 C 1.53002 * 109.46946 * 119.99876 * 23 21 19 25 25 C 1.53003 * 109.46855 * 239.99287 * 23 21 19 26 26 N 1.29177 * 108.27594 * 14.27507 * 18 17 16 27 27 O 1.41736 * 112.89471 * 0.25770 * 26 18 17 28 28 C 1.48254 * 111.00335 * 179.97438 * 13 3 2 29 29 H 1.08999 * 109.47618 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47037 * 300.00164 * 1 2 3 31 31 H 1.09007 * 109.47084 * 59.99578 * 1 2 3 32 32 H 1.09001 * 109.46589 * 240.00081 * 2 1 3 33 33 H 1.08994 * 109.46915 * 120.00682 * 2 1 3 34 34 H 0.97002 * 119.99810 * 180.02562 * 8 7 5 35 35 H 1.08992 * 110.63304 * 319.46064 * 14 13 3 36 36 H 1.08996 * 110.63629 * 82.50452 * 14 13 3 37 37 H 1.09008 * 110.78193 * 278.07554 * 15 14 13 38 38 H 1.08995 * 110.78332 * 154.63079 * 15 14 13 39 39 H 1.08996 * 110.85265 * 98.72510 * 17 16 15 40 40 H 1.09002 * 111.02721 * 335.17229 * 17 16 15 41 41 H 1.09001 * 109.46650 * 84.16962 * 22 21 19 42 42 H 1.08998 * 109.47026 * 204.16247 * 22 21 19 43 43 H 1.08994 * 109.47645 * 324.16904 * 22 21 19 44 44 H 1.08998 * 109.47180 * 359.97438 * 23 21 19 45 45 H 1.09005 * 109.47047 * 180.02562 * 24 23 21 46 46 H 1.09002 * 109.46917 * 299.99437 * 24 23 21 47 47 H 1.08998 * 109.47366 * 59.99888 * 24 23 21 48 48 H 1.08999 * 109.46365 * 60.00450 * 25 23 21 49 49 H 1.09005 * 109.46610 * 179.97438 * 25 23 21 50 50 H 1.08998 * 109.47523 * 300.00153 * 25 23 21 51 51 H 1.09004 * 110.03528 * 26.36926 * 28 13 3 52 52 H 1.09001 * 110.08322 * 264.94617 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8418 5 6 3.5420 1.4441 0.1238 6 1 4.1473 1.8887 -0.6523 7 6 4.1434 0.8782 1.2279 8 7 3.4062 0.3364 2.1727 9 14 6.0050 0.8809 1.3817 10 1 6.5988 1.5460 0.1940 11 1 6.3991 1.6163 2.6101 12 1 6.4970 -0.5178 1.4627 13 7 1.6515 2.0993 -1.2552 14 6 2.2768 1.4268 -2.4242 15 6 2.2285 2.5128 -3.5321 16 6 2.4842 3.8044 -2.7459 17 6 1.6538 4.9700 -3.3011 18 6 2.6079 6.1437 -3.1535 19 6 2.2448 7.5708 -3.2536 20 8 1.1203 7.8901 -3.5864 21 7 3.1606 8.5201 -2.9763 22 6 4.5358 8.1373 -2.6470 23 6 2.7806 9.9347 -3.0039 24 6 3.0163 10.5531 -1.6244 25 6 3.6281 10.6702 -4.0440 26 7 3.7910 5.6778 -2.9261 27 8 3.8289 4.2614 -2.8924 28 6 2.1292 3.5023 -1.2908 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8293 -0.0615 2.9497 35 1 3.3073 1.1500 -2.2021 36 1 1.6979 0.5515 -2.7188 37 1 1.2479 2.5371 -4.0074 38 1 3.0133 2.3475 -4.2702 39 1 0.7542 5.1239 -2.7052 40 1 1.4001 4.8056 -4.3483 41 1 5.1018 7.9895 -3.5667 42 1 5.0013 8.9266 -2.0568 43 1 4.5275 7.2110 -2.0726 44 1 1.7264 10.0227 -3.2666 45 1 2.7332 11.6056 -1.6449 46 1 2.4125 10.0292 -0.8834 47 1 4.0706 10.4651 -1.3621 48 1 3.4601 10.2295 -5.0267 49 1 3.3451 11.7226 -4.0649 50 1 4.6824 10.5822 -3.7817 51 1 3.0118 3.6124 -0.6606 52 1 1.3416 4.1746 -0.9507 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255167447.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:53 Heat of formation + Delta-G solvation = 6.624698 kcal Electronic energy + Delta-G solvation = -31054.849965 eV Core-core repulsion = 27057.205115 eV Total energy + Delta-G solvation = -3997.644850 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.04926 -39.90054 -37.58936 -36.78643 -34.24636 -33.42194 -32.03069 -31.69403 -30.26400 -28.98252 -27.57708 -27.27531 -26.62800 -25.19588 -24.58541 -22.95753 -21.47747 -20.95330 -20.34658 -19.17245 -18.91607 -17.25601 -16.67401 -16.55934 -15.97460 -15.75780 -15.35191 -14.86440 -14.59059 -14.47955 -14.29332 -14.02952 -13.68409 -13.47945 -13.30581 -13.24487 -12.94531 -12.62392 -12.52841 -12.47651 -12.40211 -12.35815 -11.99545 -11.67444 -11.64448 -11.35405 -11.22320 -11.19861 -11.07519 -10.92181 -10.82674 -10.63645 -10.53132 -10.43481 -10.27621 -10.00230 -9.74727 -9.60142 -9.29055 -9.09778 -9.03576 -8.38188 -7.30953 -6.01762 -4.14133 0.89068 2.36278 2.83095 3.03434 3.25584 3.34585 3.40271 4.01300 4.31273 4.39477 4.50923 4.55100 4.70114 4.79435 4.85454 4.93536 5.05921 5.17035 5.21433 5.23866 5.27103 5.31394 5.37135 5.45689 5.51739 5.57800 5.67304 5.76646 5.82268 5.84338 5.89596 5.98158 6.12217 6.22099 6.27817 6.34521 6.43831 6.48860 6.63606 6.65437 6.78091 6.89670 7.01210 7.13852 7.18225 7.26706 7.55291 7.71786 7.73726 7.87754 8.08687 8.14171 8.39246 8.95322 9.53315 10.98163 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013855 B = 0.003188 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.385486 B = 8780.643450 C = 9758.287687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 C 0.204 3.796 4 H 0.039 0.961 5 C -0.544 4.544 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.509 5.509 14 C 0.040 3.960 15 C -0.114 4.114 16 C 0.063 3.937 17 C -0.113 4.113 18 C 0.040 3.960 19 C 0.591 3.409 20 O -0.522 6.522 21 N -0.593 5.593 22 C 0.064 3.936 23 C 0.129 3.871 24 C -0.164 4.164 25 C -0.160 4.160 26 N -0.240 5.240 27 O -0.168 6.168 28 C 0.031 3.969 29 H 0.026 0.974 30 H 0.039 0.961 31 H 0.047 0.953 32 H 0.032 0.968 33 H 0.093 0.907 34 H 0.261 0.739 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.071 0.929 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.070 0.930 50 H 0.060 0.940 51 H 0.078 0.922 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.986 15.939 -11.010 19.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C 0.097 3.903 4 H 0.057 0.943 5 C -0.582 4.582 6 H 0.079 0.921 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.234 5.234 14 C -0.088 4.088 15 C -0.152 4.152 16 C 0.022 3.978 17 C -0.153 4.153 18 C -0.154 4.154 19 C 0.377 3.623 20 O -0.395 6.395 21 N -0.327 5.327 22 C -0.078 4.078 23 C 0.027 3.973 24 C -0.221 4.221 25 C -0.218 4.218 26 N 0.015 4.985 27 O -0.189 6.189 28 C -0.098 4.098 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.111 0.889 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.130 0.870 40 H 0.123 0.877 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.090 0.910 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.079 0.921 49 H 0.089 0.911 50 H 0.079 0.921 51 H 0.096 0.904 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.949 16.127 -10.850 19.460 hybrid contribution 1.317 -0.332 0.268 1.385 sum 0.368 15.795 -10.582 19.016 Atomic orbital electron populations 1.21724 0.98821 0.98496 1.00605 1.21569 0.92252 0.98919 1.02100 1.19437 0.93354 0.91376 0.86099 0.94307 1.21767 0.92621 1.38176 1.05685 0.92059 1.24896 0.97861 0.94929 0.95634 1.69886 1.34754 1.38222 1.09407 0.86641 0.86208 0.77739 0.78133 1.19649 1.21043 1.20997 1.65331 1.53215 1.00046 1.04776 1.23194 1.00141 0.95777 0.89719 1.22521 1.02023 0.92632 0.98064 1.23129 0.81365 0.95096 0.98235 1.22811 1.00081 0.87860 1.04546 1.25945 0.94775 0.96180 0.98458 1.17050 0.84659 0.82703 0.77920 1.90811 1.20119 1.81488 1.47126 1.47877 1.11079 1.06158 1.67574 1.22266 0.81050 1.02677 1.01856 1.21197 1.01435 0.78676 0.96016 1.22175 1.02575 1.01156 0.96242 1.22141 1.00292 1.00453 0.98961 1.78511 1.19769 0.93728 1.06503 1.91179 1.26199 1.10176 1.91350 1.23029 1.00658 0.93555 0.92548 0.95528 0.94180 0.93402 0.94917 0.88875 0.92941 0.91549 0.90919 0.89788 0.90450 0.87028 0.87705 0.91899 0.90632 0.88349 0.87766 0.91041 0.91921 0.91979 0.92144 0.91129 0.92077 0.90358 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.80 37.16 0.36 -2.41 16 2 C -0.11 -2.54 5.15 -26.73 -0.14 -2.68 16 3 C 0.20 4.90 1.82 -68.86 -0.13 4.78 16 4 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 5 C -0.54 -14.23 6.33 -34.44 -0.22 -14.45 16 6 H 0.06 1.65 6.05 -52.49 -0.32 1.33 16 7 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 8 N -0.88 -24.54 11.29 55.43 0.63 -23.92 16 9 Si 0.88 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 13 N -0.51 -10.40 4.77 -224.06 -1.07 -11.47 16 14 C 0.04 0.74 5.29 -1.68 -0.01 0.73 16 15 C -0.11 -1.73 6.32 -25.37 -0.16 -1.90 16 16 C 0.06 1.02 1.23 -90.28 -0.11 0.91 16 17 C -0.11 -1.57 5.90 -26.99 -0.16 -1.73 16 18 C 0.04 0.57 7.03 -79.26 -0.56 0.01 16 19 C 0.59 7.98 7.68 -12.44 -0.10 7.89 16 20 O -0.52 -8.07 16.30 5.33 0.09 -7.98 16 21 N -0.59 -6.46 2.76 -175.15 -0.48 -6.95 16 22 C 0.06 0.62 8.64 59.85 0.52 1.14 16 23 C 0.13 1.13 3.24 -67.93 -0.22 0.91 16 24 C -0.16 -1.18 9.18 37.16 0.34 -0.84 16 25 C -0.16 -1.09 9.19 37.16 0.34 -0.75 16 26 N -0.24 -3.69 8.98 35.37 0.32 -3.38 16 27 O -0.17 -3.01 11.91 -11.54 -0.14 -3.15 16 28 C 0.03 0.59 5.87 -3.18 -0.02 0.58 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.91 7.75 -51.93 -0.40 0.51 16 32 H 0.03 0.74 6.78 -51.93 -0.35 0.38 16 33 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 34 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.07 1.41 6.07 -51.93 -0.32 1.10 16 36 H 0.07 1.29 7.59 -51.93 -0.39 0.89 16 37 H 0.08 1.11 7.86 -51.92 -0.41 0.70 16 38 H 0.08 1.11 8.08 -51.93 -0.42 0.69 16 39 H 0.11 1.50 7.44 -51.93 -0.39 1.11 16 40 H 0.10 1.27 7.87 -51.93 -0.41 0.86 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.57 6.44 -51.93 -0.33 0.23 16 43 H 0.10 1.17 5.36 -51.93 -0.28 0.89 16 44 H 0.10 1.04 6.90 -51.93 -0.36 0.68 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.41 6.67 -51.93 -0.35 0.06 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 51 H 0.08 1.76 6.19 -51.93 -0.32 1.44 16 52 H 0.07 1.27 7.32 -51.93 -0.38 0.89 16 LS Contribution 396.26 15.07 5.97 5.97 Total: -1.00 -29.19 396.26 -8.70 -37.89 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -8.65 Total: 2.94 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -0.34 Total: -6.04 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: -0.61 Total: -45.71 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: -0.05 Total: -11.13 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.19 -8.70 -37.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167447.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.512 kcal (2) G-P(sol) polarization free energy of solvation -29.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds