Wall clock time and date at job start Tue Mar 31 2020 20:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47178 * 2 1 4 4 H 1.08992 * 109.47544 * 55.00640 * 3 2 1 5 5 C 1.50710 * 109.46909 * 175.00201 * 3 2 1 6 6 H 1.08001 * 120.00011 * 120.00217 * 5 3 2 7 7 C 1.37877 * 119.99870 * 300.00142 * 5 3 2 8 8 N 1.31515 * 119.99842 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99920 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46967 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47252 * 119.99935 * 9 7 5 12 12 H 1.48501 * 109.47083 * 240.00185 * 9 7 5 13 13 N 1.46903 * 109.47605 * 294.99685 * 3 2 1 14 14 C 1.48650 * 111.00135 * 297.45685 * 13 3 2 15 15 C 1.55220 * 103.39420 * 200.98326 * 14 13 3 16 16 C 1.53351 * 102.60375 * 36.35042 * 15 14 13 17 17 C 1.53508 * 111.34243 * 216.90524 * 16 15 14 18 18 C 1.51967 * 102.22353 * 216.91056 * 17 16 15 19 19 C 1.47600 * 125.85668 * 194.24454 * 18 17 16 20 20 O 1.21546 * 120.00525 * 353.62383 * 19 18 17 21 21 N 1.34780 * 119.99647 * 173.63658 * 19 18 17 22 22 C 1.46501 * 119.99862 * 3.35253 * 21 19 18 23 23 C 1.46501 * 119.99890 * 183.36007 * 21 19 18 24 24 C 1.53002 * 109.46946 * 119.99876 * 23 21 19 25 25 C 1.53003 * 109.46855 * 239.99287 * 23 21 19 26 26 N 1.29177 * 108.27594 * 14.27507 * 18 17 16 27 27 O 1.41736 * 112.89471 * 0.25770 * 26 18 17 28 28 C 1.48254 * 111.00335 * 179.97438 * 13 3 2 29 29 H 1.08999 * 109.47618 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47037 * 300.00164 * 1 2 3 31 31 H 1.09007 * 109.47084 * 59.99578 * 1 2 3 32 32 H 1.09001 * 109.46589 * 240.00081 * 2 1 3 33 33 H 1.08994 * 109.46915 * 120.00682 * 2 1 3 34 34 H 0.97002 * 119.99810 * 180.02562 * 8 7 5 35 35 H 1.08992 * 110.63304 * 319.46064 * 14 13 3 36 36 H 1.08996 * 110.63629 * 82.50452 * 14 13 3 37 37 H 1.09008 * 110.78193 * 278.07554 * 15 14 13 38 38 H 1.08995 * 110.78332 * 154.63079 * 15 14 13 39 39 H 1.08996 * 110.85265 * 98.72510 * 17 16 15 40 40 H 1.09002 * 111.02721 * 335.17229 * 17 16 15 41 41 H 1.09001 * 109.46650 * 84.16962 * 22 21 19 42 42 H 1.08998 * 109.47026 * 204.16247 * 22 21 19 43 43 H 1.08994 * 109.47645 * 324.16904 * 22 21 19 44 44 H 1.08998 * 109.47180 * 359.97438 * 23 21 19 45 45 H 1.09005 * 109.47047 * 180.02562 * 24 23 21 46 46 H 1.09002 * 109.46917 * 299.99437 * 24 23 21 47 47 H 1.08998 * 109.47366 * 59.99888 * 24 23 21 48 48 H 1.08999 * 109.46365 * 60.00450 * 25 23 21 49 49 H 1.09005 * 109.46610 * 179.97438 * 25 23 21 50 50 H 1.08998 * 109.47523 * 300.00153 * 25 23 21 51 51 H 1.09004 * 110.03528 * 26.36926 * 28 13 3 52 52 H 1.09001 * 110.08322 * 264.94617 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8418 5 6 3.5420 1.4441 0.1238 6 1 4.1473 1.8887 -0.6523 7 6 4.1434 0.8782 1.2279 8 7 3.4062 0.3364 2.1727 9 14 6.0050 0.8809 1.3817 10 1 6.5988 1.5460 0.1940 11 1 6.3991 1.6163 2.6101 12 1 6.4970 -0.5178 1.4627 13 7 1.6515 2.0993 -1.2552 14 6 2.2768 1.4268 -2.4242 15 6 2.2285 2.5128 -3.5321 16 6 2.4842 3.8044 -2.7459 17 6 1.6538 4.9700 -3.3011 18 6 2.6079 6.1437 -3.1535 19 6 2.2448 7.5708 -3.2536 20 8 1.1203 7.8901 -3.5864 21 7 3.1606 8.5201 -2.9763 22 6 4.5358 8.1373 -2.6470 23 6 2.7806 9.9347 -3.0039 24 6 3.0163 10.5531 -1.6244 25 6 3.6281 10.6702 -4.0440 26 7 3.7910 5.6778 -2.9261 27 8 3.8289 4.2614 -2.8924 28 6 2.1292 3.5023 -1.2908 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8293 -0.0615 2.9497 35 1 3.3073 1.1500 -2.2021 36 1 1.6979 0.5515 -2.7188 37 1 1.2479 2.5371 -4.0074 38 1 3.0133 2.3475 -4.2702 39 1 0.7542 5.1239 -2.7052 40 1 1.4001 4.8056 -4.3483 41 1 5.1018 7.9895 -3.5667 42 1 5.0013 8.9266 -2.0568 43 1 4.5275 7.2110 -2.0726 44 1 1.7264 10.0227 -3.2666 45 1 2.7332 11.6056 -1.6449 46 1 2.4125 10.0292 -0.8834 47 1 4.0706 10.4651 -1.3621 48 1 3.4601 10.2295 -5.0267 49 1 3.3451 11.7226 -4.0649 50 1 4.6824 10.5822 -3.7817 51 1 3.0118 3.6124 -0.6606 52 1 1.3416 4.1746 -0.9507 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167447.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:52 Heat of formation + Delta-G solvation = -11.226390 kcal Electronic energy + Delta-G solvation = -31055.624046 eV Core-core repulsion = 27057.205115 eV Total energy + Delta-G solvation = -3998.418931 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.24052 -40.99484 -39.14543 -37.69294 -35.86253 -34.63679 -33.61848 -32.93237 -31.75785 -30.39693 -28.46166 -28.16020 -28.07977 -26.73742 -25.61771 -24.69671 -23.07765 -21.93145 -21.53472 -20.88780 -19.97467 -18.50070 -18.30201 -17.81001 -17.10964 -16.98699 -16.82820 -16.14813 -16.10343 -15.82374 -15.40546 -15.04473 -14.95285 -14.79302 -14.76781 -14.26697 -14.10029 -13.98623 -13.90896 -13.46147 -13.43351 -13.24479 -13.21269 -13.07352 -12.91917 -12.87446 -12.58811 -12.52598 -12.44098 -12.36044 -12.25875 -11.96451 -11.88893 -11.84634 -11.69768 -11.59211 -11.40405 -11.34326 -11.01292 -10.63073 -10.44872 -9.91603 -9.10206 -8.07166 -6.26845 -0.22904 1.32443 1.35905 1.36347 1.46778 1.76415 1.91026 2.38088 2.97485 3.06992 3.12344 3.30784 3.48775 3.59508 3.76031 3.84386 4.07461 4.14275 4.17300 4.29279 4.36546 4.44110 4.57711 4.58294 4.60623 4.65211 4.68435 4.72238 4.73228 4.81663 4.87809 4.89287 4.91583 4.94731 4.97337 4.98880 5.05693 5.20990 5.23511 5.25905 5.30811 5.41736 5.43365 5.44590 5.60468 5.75999 5.88817 5.99796 6.05298 6.12961 6.29012 6.45462 6.72459 6.92026 7.42714 8.89464 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013855 B = 0.003188 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.385486 B = 8780.643450 C = 9758.287687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.104 4.104 3 C 0.212 3.788 4 H 0.001 0.999 5 C -0.546 4.546 6 H 0.048 0.952 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 0.941 3.059 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.278 1.278 13 N -0.504 5.504 14 C 0.038 3.962 15 C -0.101 4.101 16 C 0.064 3.936 17 C -0.108 4.108 18 C 0.049 3.951 19 C 0.586 3.414 20 O -0.545 6.545 21 N -0.585 5.585 22 C 0.064 3.936 23 C 0.123 3.877 24 C -0.159 4.159 25 C -0.154 4.154 26 N -0.246 5.246 27 O -0.200 6.200 28 C 0.033 3.967 29 H 0.047 0.953 30 H 0.031 0.969 31 H 0.060 0.940 32 H 0.034 0.966 33 H 0.062 0.938 34 H 0.261 0.739 35 H 0.034 0.966 36 H 0.085 0.915 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.118 0.882 40 H 0.132 0.868 41 H 0.070 0.930 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.046 0.954 47 H 0.071 0.929 48 H 0.049 0.951 49 H 0.090 0.910 50 H 0.070 0.930 51 H 0.038 0.962 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.052 17.442 -12.779 21.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.143 4.143 3 C 0.104 3.896 4 H 0.019 0.981 5 C -0.585 4.585 6 H 0.067 0.933 7 C -0.176 4.176 8 N -0.548 5.548 9 Si 0.767 3.233 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.203 1.203 13 N -0.228 5.228 14 C -0.090 4.090 15 C -0.139 4.139 16 C 0.024 3.976 17 C -0.147 4.147 18 C -0.145 4.145 19 C 0.372 3.628 20 O -0.421 6.421 21 N -0.317 5.317 22 C -0.078 4.078 23 C 0.021 3.979 24 C -0.217 4.217 25 C -0.212 4.212 26 N 0.007 4.993 27 O -0.219 6.219 28 C -0.096 4.096 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.104 0.896 37 H 0.134 0.866 38 H 0.108 0.892 39 H 0.136 0.864 40 H 0.150 0.850 41 H 0.089 0.911 42 H 0.120 0.880 43 H 0.095 0.905 44 H 0.108 0.892 45 H 0.110 0.890 46 H 0.065 0.935 47 H 0.090 0.910 48 H 0.068 0.932 49 H 0.108 0.892 50 H 0.089 0.911 51 H 0.056 0.944 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.987 17.628 -12.621 21.703 hybrid contribution 1.343 -0.678 0.836 1.721 sum 0.355 16.950 -11.785 20.647 Atomic orbital electron populations 1.21588 0.96115 0.99957 1.00777 1.21406 0.94612 0.97691 1.00587 1.19176 0.91867 0.91842 0.86682 0.98077 1.21937 0.93903 1.37414 1.05209 0.93341 1.25543 1.01465 0.95011 0.95604 1.70000 1.36036 1.38993 1.09790 0.85772 0.81939 0.77814 0.77754 1.20032 1.20731 1.20319 1.65251 1.53053 1.00601 1.03890 1.23205 0.98212 0.97424 0.90169 1.22528 1.04257 0.90213 0.96925 1.23039 0.81634 0.96718 0.96254 1.22816 0.99543 0.86343 1.06039 1.26222 0.94560 0.96897 0.96800 1.17048 0.84813 0.82672 0.78306 1.90801 1.21023 1.81628 1.48690 1.48062 1.11051 1.06778 1.65846 1.22317 0.80574 1.02619 1.02325 1.21428 1.01165 0.77553 0.97714 1.22156 1.02913 1.02013 0.94595 1.22105 1.00408 1.01156 0.97524 1.78624 1.20333 0.92275 1.08071 1.91162 1.27059 1.11938 1.91699 1.22994 0.99118 0.93066 0.94464 0.93404 0.95016 0.92123 0.94705 0.91976 0.92927 0.94794 0.89635 0.86636 0.89153 0.86400 0.85019 0.91113 0.87992 0.90498 0.89185 0.88976 0.93524 0.90998 0.93156 0.89152 0.91092 0.94370 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.97 9.80 71.98 0.71 -4.27 16 2 C -0.10 -4.91 5.15 30.59 0.16 -4.75 16 3 C 0.21 10.54 1.82 44.17 0.08 10.62 16 4 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 5 C -0.55 -29.68 6.33 25.60 0.16 -29.52 16 6 H 0.05 2.72 6.05 -2.91 -0.02 2.70 16 7 C 0.02 1.31 5.29 84.65 0.45 1.76 16 8 N -0.91 -51.99 11.29 21.45 0.24 -51.75 16 9 Si 0.94 44.41 29.54 68.60 2.03 46.44 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 N -0.50 -20.76 4.77 -862.80 -4.12 -24.88 16 14 C 0.04 1.39 5.29 86.73 0.46 1.85 16 15 C -0.10 -2.87 6.32 31.47 0.20 -2.68 16 16 C 0.06 2.06 1.23 -10.57 -0.01 2.04 16 17 C -0.11 -2.79 5.90 30.42 0.18 -2.61 16 18 C 0.05 1.35 7.03 45.83 0.32 1.67 16 19 C 0.59 15.28 7.68 86.71 0.67 15.95 16 20 O -0.55 -16.38 16.30 -3.86 -0.06 -16.44 16 21 N -0.59 -11.98 2.76 -826.31 -2.28 -14.26 16 22 C 0.06 1.14 8.64 127.77 1.10 2.25 16 23 C 0.12 1.94 3.24 44.99 0.15 2.08 16 24 C -0.16 -1.96 9.18 71.98 0.66 -1.29 16 25 C -0.15 -1.71 9.19 71.98 0.66 -1.05 16 26 N -0.25 -7.49 8.98 -42.00 -0.38 -7.86 16 27 O -0.20 -7.19 11.91 -39.09 -0.47 -7.66 16 28 C 0.03 1.28 5.87 85.97 0.50 1.78 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.03 1.26 8.14 -2.39 -0.02 1.25 16 31 H 0.06 2.20 7.75 -2.38 -0.02 2.19 16 32 H 0.03 1.58 6.78 -2.39 -0.02 1.56 16 33 H 0.06 3.33 5.95 -2.39 -0.01 3.31 16 34 H 0.26 14.26 8.31 -92.71 -0.77 13.48 16 35 H 0.03 1.47 6.07 -2.39 -0.01 1.46 16 36 H 0.09 2.90 7.59 -2.39 -0.02 2.88 16 37 H 0.12 2.60 7.86 -2.38 -0.02 2.59 16 38 H 0.09 2.39 8.08 -2.39 -0.02 2.37 16 39 H 0.12 2.94 7.44 -2.39 -0.02 2.93 16 40 H 0.13 2.76 7.87 -2.39 -0.02 2.74 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.10 1.28 6.44 -2.39 -0.02 1.27 16 43 H 0.08 1.80 5.36 -2.39 -0.01 1.78 16 44 H 0.09 1.71 6.90 -2.39 -0.02 1.69 16 45 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 46 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.07 0.75 6.67 -2.39 -0.02 0.73 16 48 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 50 H 0.07 0.66 7.67 -2.39 -0.02 0.64 16 51 H 0.04 1.80 6.19 -2.39 -0.01 1.79 16 52 H 0.08 2.83 7.32 -2.39 -0.02 2.82 16 Total: -1.00 -65.83 396.26 2.32 -63.51 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.91 Total: 19.06 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 6.44 Total: -6.16 kcal Atomic # 7 Polarization: -92.21 SS G_CDS: -6.53 Total: -98.74 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.53 Total: -24.10 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -65.83 2.32 -63.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167447.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.283 kcal (2) G-P(sol) polarization free energy of solvation -65.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds