Wall clock time and date at job start Tue Mar 31 2020 20:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46968 * 2 1 4 4 H 1.08999 * 109.47423 * 54.83367 * 3 2 1 5 5 C 1.50699 * 109.47009 * 174.83460 * 3 2 1 6 6 H 1.08004 * 120.00245 * 120.00079 * 5 3 2 7 7 C 1.37884 * 120.00182 * 299.99697 * 5 3 2 8 8 N 1.31515 * 119.99559 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00033 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47004 * 60.00439 * 9 7 5 11 11 H 1.48497 * 109.46954 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47244 * 300.00402 * 9 7 5 13 13 N 1.46896 * 109.47333 * 294.83431 * 3 2 1 14 14 C 1.46951 * 110.98405 * 294.56755 * 13 3 2 15 15 C 1.53037 * 109.54768 * 173.88219 * 14 13 3 16 16 C 1.53197 * 109.26894 * 59.49672 * 15 14 13 17 17 C 1.52725 * 109.17750 * 302.96014 * 16 15 14 18 18 C 1.54138 * 109.77389 * 177.79312 * 17 16 15 19 19 C 1.54697 * 101.67753 * 144.31574 * 18 17 16 20 20 C 1.51320 * 104.21610 * 335.51037 * 19 18 17 21 21 O 1.21280 * 124.94965 * 196.17728 * 20 19 18 22 22 N 1.34543 * 110.09885 * 16.20452 * 20 19 18 23 23 C 1.46501 * 124.41487 * 180.19641 * 22 20 19 24 24 C 1.50694 * 109.47241 * 92.44266 * 23 22 20 25 25 O 1.21281 * 120.00174 * 353.94686 * 24 23 22 26 26 N 1.34781 * 120.00127 * 173.93858 * 24 23 22 27 27 C 1.46502 * 119.99813 * 184.95614 * 26 24 23 28 28 C 1.46925 * 111.00319 * 170.36752 * 13 3 2 29 29 H 1.09002 * 109.47049 * 305.28553 * 1 2 3 30 30 H 1.09001 * 109.47166 * 65.28232 * 1 2 3 31 31 H 1.08998 * 109.46955 * 185.28412 * 1 2 3 32 32 H 1.09000 * 109.47625 * 240.00054 * 2 1 3 33 33 H 1.09000 * 109.47475 * 119.99732 * 2 1 3 34 34 H 0.96997 * 119.99535 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.51900 * 53.83326 * 14 13 3 36 36 H 1.08999 * 109.43407 * 293.87956 * 14 13 3 37 37 H 1.09004 * 109.50829 * 299.55249 * 15 14 13 38 38 H 1.08999 * 109.51444 * 179.44902 * 15 14 13 39 39 H 1.08997 * 109.51995 * 62.87123 * 16 15 14 40 40 H 1.09005 * 109.52245 * 183.04971 * 16 15 14 41 41 H 1.09007 * 110.98167 * 262.40677 * 18 17 16 42 42 H 1.09000 * 110.98854 * 26.21107 * 18 17 16 43 43 H 1.08998 * 110.48473 * 216.83041 * 19 18 17 44 44 H 1.09005 * 110.59793 * 94.25249 * 19 18 17 45 45 H 1.09005 * 109.46748 * 212.44211 * 23 22 20 46 46 H 1.08996 * 109.47348 * 332.43965 * 23 22 20 47 47 H 0.96993 * 119.99641 * 4.95483 * 26 24 23 48 48 H 1.08996 * 109.46661 * 184.65791 * 27 26 24 49 49 H 1.08997 * 109.46724 * 304.65025 * 27 26 24 50 50 H 1.08993 * 109.47393 * 64.65820 * 27 26 24 51 51 H 1.09004 * 109.45431 * 65.08528 * 28 13 3 52 52 H 1.08995 * 109.45472 * 305.14337 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6030 1.9824 0.8401 5 6 3.5415 1.4445 0.1279 6 1 4.1490 1.8883 -0.6470 7 6 4.1399 0.8797 1.2343 8 7 3.4002 0.3388 2.1777 9 14 6.0012 0.8815 1.3925 10 1 6.4966 2.2813 1.3921 11 1 6.3906 0.2195 2.6634 12 1 6.5960 0.1456 0.2479 13 7 1.6548 2.0981 -1.2569 14 6 2.3299 1.4751 -2.4038 15 6 1.7927 2.0782 -3.7037 16 6 2.0487 3.5886 -3.7039 17 6 1.3966 4.2082 -2.4697 18 6 1.6928 5.7202 -2.4270 19 6 0.3757 6.2808 -1.8404 20 6 -0.6623 5.2382 -2.1945 21 8 -1.8619 5.4143 -2.1656 22 7 -0.0604 4.0872 -2.5454 23 6 -0.7705 2.8717 -2.9510 24 6 -0.9258 2.8572 -4.4499 25 8 -0.5860 3.8202 -5.1041 26 7 -1.4421 1.7739 -5.0635 27 6 -1.4929 1.7155 -6.5265 28 6 1.9238 3.5415 -1.2019 29 1 -0.3633 0.5936 0.8389 30 1 -0.3633 0.4297 -0.9335 31 1 -0.3633 -1.0233 0.0946 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8212 -0.0582 2.9562 35 1 2.1427 0.4013 -2.3973 36 1 3.4025 1.6565 -2.3356 37 1 0.7214 1.8905 -3.7766 38 1 2.3008 1.6227 -4.5537 39 1 3.1222 3.7760 -3.6815 40 1 1.6197 4.0307 -4.6032 41 1 2.5353 5.9345 -1.7694 42 1 1.8719 6.1114 -3.4285 43 1 0.1289 7.2368 -2.3022 44 1 0.4534 6.3897 -0.7586 45 1 -0.2020 1.9966 -2.6361 46 1 -1.7549 2.8529 -2.4836 47 1 -1.7800 1.0331 -4.5364 48 1 -2.0137 0.8093 -6.8359 49 1 -2.0244 2.5878 -6.9066 50 1 -0.4785 1.7057 -6.9251 51 1 2.9982 3.7078 -1.1241 52 1 1.4263 3.9706 -0.3322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255168267.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:55 Heat of formation + Delta-G solvation = -64.507620 kcal Electronic energy + Delta-G solvation = -33079.002169 eV Core-core repulsion = 29078.272791 eV Total energy + Delta-G solvation = -4000.729378 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.45041 -40.25990 -39.57617 -37.58327 -35.54852 -35.27399 -34.11442 -33.61202 -32.29027 -30.46293 -29.44733 -28.43901 -26.55108 -25.62885 -25.41430 -23.84042 -22.52696 -21.96779 -21.71337 -20.67127 -19.93823 -18.47762 -18.19158 -17.75106 -17.19264 -16.88927 -16.61303 -16.34871 -16.07108 -15.90751 -15.24339 -15.06881 -14.91827 -14.77674 -14.66324 -14.43408 -14.24563 -14.09154 -13.82916 -13.50454 -13.37841 -13.27024 -13.10956 -13.06196 -13.03125 -12.90270 -12.70461 -12.56683 -12.45631 -12.08090 -11.98421 -11.64539 -11.48320 -11.43605 -11.36535 -11.11635 -10.93403 -10.82070 -10.74718 -10.36126 -10.06889 -9.64702 -8.82637 -7.97426 -6.19432 1.40940 1.43528 1.48629 1.53871 1.60946 1.93341 2.43862 2.52259 3.20268 3.24915 3.49402 3.63288 3.76632 3.92451 4.06447 4.11459 4.19632 4.28785 4.34991 4.49058 4.51765 4.56220 4.65393 4.66853 4.67597 4.73666 4.81207 4.86710 4.91388 4.96877 4.98111 5.01515 5.02488 5.08752 5.11096 5.13394 5.30069 5.35646 5.39588 5.48305 5.50218 5.57853 5.62194 5.69769 5.86048 6.13557 6.22140 6.25117 6.44094 6.53604 6.71671 7.01795 7.17635 7.27690 7.51737 8.96529 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013346 B = 0.004418 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.541903 B = 6335.995814 C = 6955.531550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.105 4.105 3 C 0.225 3.775 4 H 0.001 0.999 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.025 3.975 8 N -0.910 5.910 9 Si 0.939 3.061 10 H -0.275 1.275 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.523 5.523 14 C 0.064 3.936 15 C -0.133 4.133 16 C -0.116 4.116 17 C 0.168 3.832 18 C -0.114 4.114 19 C -0.145 4.145 20 C 0.509 3.491 21 O -0.587 6.587 22 N -0.569 5.569 23 C 0.093 3.907 24 C 0.499 3.501 25 O -0.564 6.564 26 N -0.727 5.727 27 C 0.088 3.912 28 C 0.066 3.934 29 H 0.026 0.974 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.036 0.964 33 H 0.058 0.942 34 H 0.259 0.741 35 H 0.067 0.933 36 H 0.023 0.977 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.147 0.853 46 H 0.098 0.902 47 H 0.417 0.583 48 H 0.110 0.890 49 H 0.045 0.955 50 H 0.052 0.948 51 H 0.041 0.959 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.229 2.803 -13.502 14.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.144 4.144 3 C 0.117 3.883 4 H 0.019 0.981 5 C -0.585 4.585 6 H 0.072 0.928 7 C -0.175 4.175 8 N -0.550 5.550 9 Si 0.766 3.234 10 H -0.201 1.201 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.246 5.246 14 C -0.064 4.064 15 C -0.170 4.170 16 C -0.154 4.154 17 C 0.083 3.917 18 C -0.152 4.152 19 C -0.185 4.185 20 C 0.299 3.701 21 O -0.468 6.468 22 N -0.298 5.298 23 C -0.032 4.032 24 C 0.285 3.715 25 O -0.443 6.443 26 N -0.380 5.380 27 C -0.056 4.056 28 C -0.063 4.063 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.127 0.873 42 H 0.113 0.887 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.164 0.836 46 H 0.116 0.884 47 H 0.253 0.747 48 H 0.128 0.872 49 H 0.064 0.936 50 H 0.071 0.929 51 H 0.059 0.941 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.110 3.330 -13.873 15.521 hybrid contribution 1.773 -0.501 0.993 2.093 sum -4.337 2.829 -12.880 13.882 Atomic orbital electron populations 1.21566 0.96374 0.99543 1.00670 1.21440 0.94349 0.98166 1.00443 1.18999 0.91691 0.91449 0.86121 0.98136 1.21951 0.94098 1.37426 1.04989 0.92794 1.25524 1.01042 0.95162 0.95751 1.69993 1.36079 1.39131 1.09759 0.85911 0.82307 0.78105 0.77050 1.20091 1.21599 1.20032 1.62352 1.56614 1.01799 1.03879 1.21947 0.95998 0.98639 0.89859 1.22150 1.02561 0.95329 0.96943 1.21793 1.00818 0.95981 0.96792 1.20908 0.78842 0.96608 0.95384 1.22663 0.97678 0.91280 1.03614 1.22361 0.93489 0.98304 1.04360 1.21586 0.88810 0.84800 0.74947 1.90636 1.17000 1.82457 1.56701 1.47616 1.07098 1.10887 1.64241 1.21727 0.99857 0.90929 0.90731 1.21296 0.76378 0.82655 0.91175 1.90638 1.50651 1.35465 1.67563 1.45750 1.63132 1.20283 1.08857 1.21630 1.02060 1.03224 0.78654 1.22172 0.98479 0.89705 0.95982 0.95447 0.92064 0.93739 0.94487 0.92305 0.93184 0.91467 0.95922 0.90198 0.91078 0.90263 0.90892 0.87305 0.88663 0.86782 0.86707 0.83559 0.88402 0.74665 0.87181 0.93630 0.92924 0.94112 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.41 9.74 71.98 0.70 -3.71 16 2 C -0.11 -4.53 5.16 30.59 0.16 -4.37 16 3 C 0.22 10.03 1.71 44.17 0.08 10.10 16 4 H 0.00 0.04 8.00 -2.39 -0.02 0.02 16 5 C -0.55 -26.81 7.22 25.60 0.18 -26.63 16 6 H 0.05 2.64 5.84 -2.91 -0.02 2.62 16 7 C 0.03 1.29 5.29 84.66 0.45 1.74 16 8 N -0.91 -49.44 11.29 21.45 0.24 -49.20 16 9 Si 0.94 41.27 29.54 68.60 2.03 43.30 16 10 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 13 N -0.52 -18.59 2.70 -875.86 -2.36 -20.96 16 14 C 0.06 2.09 4.57 86.31 0.39 2.48 16 15 C -0.13 -3.52 5.33 30.67 0.16 -3.35 16 16 C -0.12 -3.06 4.26 30.57 0.13 -2.93 16 17 C 0.17 4.63 0.71 3.79 0.00 4.63 16 18 C -0.11 -2.52 6.18 31.56 0.20 -2.32 16 19 C -0.15 -3.48 6.86 30.62 0.21 -3.27 16 20 C 0.51 16.75 8.03 87.89 0.71 17.46 16 21 O -0.59 -23.61 17.57 -3.03 -0.05 -23.67 16 22 N -0.57 -17.20 1.95 -777.92 -1.52 -18.71 16 23 C 0.09 2.60 5.34 85.63 0.46 3.06 16 24 C 0.50 13.39 5.37 87.65 0.47 13.86 16 25 O -0.56 -18.95 14.54 -3.03 -0.04 -19.00 16 26 N -0.73 -13.53 5.69 -484.53 -2.76 -16.28 16 27 C 0.09 1.35 10.73 127.77 1.37 2.72 16 28 C 0.07 2.20 4.02 86.18 0.35 2.55 16 29 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.91 7.60 -2.39 -0.02 1.89 16 31 H 0.04 1.40 8.14 -2.39 -0.02 1.39 16 32 H 0.04 1.53 6.19 -2.39 -0.01 1.51 16 33 H 0.06 2.96 5.95 -2.39 -0.01 2.94 16 34 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 35 H 0.07 2.26 6.10 -2.39 -0.01 2.25 16 36 H 0.02 0.83 6.40 -2.39 -0.02 0.82 16 37 H 0.08 2.04 2.53 -2.39 -0.01 2.03 16 38 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.07 2.07 6.43 -2.38 -0.02 2.06 16 41 H 0.11 2.05 7.86 -2.38 -0.02 2.03 16 42 H 0.09 1.90 7.89 -2.39 -0.02 1.88 16 43 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.11 2.50 8.14 -2.38 -0.02 2.48 16 45 H 0.15 3.96 4.04 -2.38 -0.01 3.95 16 46 H 0.10 2.76 7.88 -2.39 -0.02 2.74 16 47 H 0.42 5.34 8.83 -92.71 -0.82 4.52 16 48 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.04 0.84 8.11 -2.39 -0.02 0.82 16 50 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.04 1.45 7.25 -2.38 -0.02 1.43 16 52 H 0.06 2.00 8.03 -2.39 -0.02 1.98 16 Total: -1.00 -67.65 383.49 1.67 -65.99 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.12 Total: 26.53 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 6.01 Total: 12.02 kcal Atomic # 7 Polarization: -98.76 SS G_CDS: -6.39 Total: -105.16 kcal Atomic # 8 Polarization: -42.57 SS G_CDS: -0.10 Total: -42.66 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -67.65 1.67 -65.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168267.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.478 kcal (2) G-P(sol) polarization free energy of solvation -67.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds