Wall clock time and date at job start Tue Mar 31 2020 20:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47277 * 2 1 4 4 H 1.08999 * 109.47159 * 303.23169 * 3 2 1 5 5 C 1.50703 * 109.47467 * 183.22351 * 3 2 1 6 6 H 1.07997 * 119.99917 * 240.00110 * 5 3 2 7 7 C 1.37878 * 119.99363 * 60.00520 * 5 3 2 8 8 N 1.31509 * 120.00340 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99278 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47530 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46637 * 120.00233 * 9 7 5 12 12 H 1.48503 * 109.47202 * 239.99478 * 9 7 5 13 13 N 1.46900 * 109.46627 * 63.22711 * 3 2 1 14 14 C 1.46843 * 111.00209 * 58.81520 * 13 3 2 15 15 C 1.53047 * 109.60883 * 186.14284 * 14 13 3 16 16 C 1.53197 * 109.22255 * 300.46836 * 15 14 13 17 17 C 1.52724 * 109.17187 * 57.01322 * 16 15 14 18 18 C 1.54285 * 109.91061 * 182.17842 * 17 16 15 19 19 C 1.54707 * 101.61235 * 266.08256 * 18 17 16 20 20 C 1.51321 * 104.21078 * 335.32994 * 19 18 17 21 21 O 1.21277 * 124.94937 * 196.22469 * 20 19 18 22 22 N 1.34530 * 110.09826 * 16.19710 * 20 19 18 23 23 C 1.46505 * 124.41374 * 180.12090 * 22 20 19 24 24 C 1.50700 * 109.46910 * 83.76679 * 23 22 20 25 25 O 1.21287 * 120.00032 * 0.02562 * 24 23 22 26 26 N 1.34776 * 119.99924 * 179.97438 * 24 23 22 27 27 C 1.46505 * 119.99799 * 180.02562 * 26 24 23 28 28 C 1.46924 * 110.99982 * 182.97570 * 13 3 2 29 29 H 1.09001 * 109.47154 * 54.91382 * 1 2 3 30 30 H 1.09007 * 109.46925 * 174.91342 * 1 2 3 31 31 H 1.08995 * 109.47287 * 294.91221 * 1 2 3 32 32 H 1.08999 * 109.47536 * 240.00569 * 2 1 3 33 33 H 1.09003 * 109.47729 * 120.00258 * 2 1 3 34 34 H 0.97003 * 119.99764 * 179.97438 * 8 7 5 35 35 H 1.08994 * 109.44896 * 66.09353 * 14 13 3 36 36 H 1.09007 * 109.42091 * 306.16598 * 14 13 3 37 37 H 1.09000 * 109.50839 * 180.54903 * 15 14 13 38 38 H 1.08996 * 109.51485 * 60.39363 * 15 14 13 39 39 H 1.08999 * 109.51984 * 297.10411 * 16 15 14 40 40 H 1.09004 * 109.56812 * 176.95032 * 16 15 14 41 41 H 1.08999 * 111.18183 * 147.93355 * 18 17 16 42 42 H 1.08998 * 110.88814 * 24.10178 * 18 17 16 43 43 H 1.08995 * 110.48317 * 216.64274 * 19 18 17 44 44 H 1.08999 * 110.48251 * 94.01333 * 19 18 17 45 45 H 1.09008 * 109.46867 * 323.77234 * 23 22 20 46 46 H 1.08997 * 109.47410 * 203.77357 * 23 22 20 47 47 H 0.96994 * 120.00016 * 0.02562 * 26 24 23 48 48 H 1.08996 * 109.47194 * 300.00450 * 27 26 24 49 49 H 1.09004 * 109.46815 * 180.02562 * 27 26 24 50 50 H 1.09001 * 109.46647 * 60.00813 * 27 26 24 51 51 H 1.09001 * 109.46175 * 54.86735 * 28 13 3 52 52 H 1.09000 * 109.45878 * 294.91719 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6302 1.9728 -0.8596 5 6 3.5449 1.4433 -0.0799 6 1 4.1273 1.8959 0.7090 7 6 4.1781 0.8662 -1.1602 8 7 3.4689 0.3146 -2.1205 9 14 6.0435 0.8678 -1.2596 10 1 6.6025 1.5450 -0.0620 11 1 6.5375 -0.5317 -1.3120 12 1 6.4734 1.5906 -2.4835 13 7 1.6150 2.1120 1.2365 14 6 2.1263 1.4074 2.4190 15 6 1.5419 2.0378 3.6853 16 6 1.9429 3.5152 3.7444 17 6 1.4615 4.2167 2.4761 18 6 1.9042 5.6946 2.4928 19 6 0.6610 6.3853 3.1018 20 6 -0.4808 5.4459 2.7800 21 8 -1.6567 5.7383 2.8318 22 7 -0.0015 4.2393 2.4274 23 6 -0.8351 3.0952 2.0502 24 6 -1.2027 3.2004 0.5925 25 8 -0.8068 4.1386 -0.0665 26 7 -1.9704 2.2516 0.0209 27 6 -2.3273 2.3537 -1.3964 28 6 2.0271 3.5223 1.2401 29 1 -0.3633 0.5907 -0.8409 30 1 -0.3633 -1.0237 -0.0911 31 1 -0.3633 0.4329 0.9320 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.9144 -0.0911 -2.8807 35 1 3.2134 1.4826 2.4445 36 1 1.8363 0.3578 2.3691 37 1 1.9301 1.5199 4.5623 38 1 0.4552 1.9561 3.6645 39 1 3.0276 3.5956 3.8157 40 1 1.4849 3.9832 4.6158 41 1 2.0983 6.0590 1.4840 42 1 2.7781 5.8313 3.1298 43 1 0.4983 7.3572 2.6362 44 1 0.7744 6.4924 4.1806 45 1 -1.7424 3.0918 2.6544 46 1 -0.2823 2.1712 2.2198 47 1 -2.2866 1.5012 0.5478 48 1 -2.8802 3.2775 -1.5662 49 1 -2.9476 1.5024 -1.6770 50 1 -1.4198 2.3571 -2.0001 51 1 1.6495 4.0132 0.3432 52 1 3.1153 3.5825 1.2559 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255168269.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:02 Heat of formation + Delta-G solvation = -51.999872 kcal Electronic energy + Delta-G solvation = -33728.046174 eV Core-core repulsion = 29727.859172 eV Total energy + Delta-G solvation = -4000.187002 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.04818 -38.71139 -38.17540 -36.14120 -34.14026 -33.68863 -32.73852 -31.81988 -30.88674 -29.19990 -28.16249 -26.65360 -25.34292 -24.36580 -23.78115 -22.25480 -21.41735 -20.77412 -20.09274 -19.01739 -18.55502 -17.15917 -16.46150 -16.25075 -15.70040 -15.39926 -15.11076 -14.93358 -14.64434 -14.46853 -13.96801 -13.84672 -13.45995 -13.35743 -13.23367 -13.08034 -12.83797 -12.69840 -12.48039 -12.27159 -12.07057 -11.95396 -11.83838 -11.50694 -11.43018 -11.33882 -11.14615 -10.95276 -10.90198 -10.73517 -10.51476 -10.27950 -10.25491 -9.85772 -9.75590 -9.53351 -9.49328 -9.32111 -9.13276 -8.64122 -8.41435 -8.29520 -7.20279 -6.04040 -4.17085 2.80564 3.21340 3.22177 3.25833 3.30812 3.32418 3.84249 4.34680 4.46270 4.63403 4.83099 4.97080 5.15769 5.20956 5.22003 5.31896 5.34980 5.44265 5.54972 5.62107 5.68327 5.73172 5.82079 5.86960 5.89144 5.96394 6.08461 6.09805 6.12278 6.18247 6.23044 6.25016 6.31623 6.41224 6.52066 6.61275 6.69822 6.73151 6.81860 6.87075 6.96995 7.13459 7.23878 7.49529 7.57026 7.68833 7.88959 7.89538 8.08256 8.23938 8.38593 8.47808 8.77114 8.92113 9.50713 10.95271 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011743 B = 0.005553 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.856842 B = 5041.500371 C = 6213.487877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 C 0.220 3.780 4 H 0.039 0.961 5 C -0.542 4.542 6 H 0.056 0.944 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.532 5.532 14 C 0.050 3.950 15 C -0.125 4.125 16 C -0.119 4.119 17 C 0.163 3.837 18 C -0.122 4.122 19 C -0.151 4.151 20 C 0.520 3.480 21 O -0.545 6.545 22 N -0.571 5.571 23 C 0.104 3.896 24 C 0.519 3.481 25 O -0.533 6.533 26 N -0.734 5.734 27 C 0.094 3.906 28 C 0.063 3.937 29 H 0.046 0.954 30 H 0.023 0.977 31 H 0.039 0.961 32 H 0.092 0.908 33 H 0.034 0.966 34 H 0.260 0.740 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.147 0.853 47 H 0.397 0.603 48 H 0.050 0.950 49 H 0.068 0.932 50 H 0.061 0.939 51 H 0.080 0.920 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.294 2.828 10.142 12.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.152 4.152 3 C 0.114 3.886 4 H 0.056 0.944 5 C -0.581 4.581 6 H 0.074 0.926 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.256 5.256 14 C -0.079 4.079 15 C -0.162 4.162 16 C -0.158 4.158 17 C 0.078 3.922 18 C -0.160 4.160 19 C -0.191 4.191 20 C 0.308 3.692 21 O -0.423 6.423 22 N -0.302 5.302 23 C -0.021 4.021 24 C 0.304 3.696 25 O -0.408 6.408 26 N -0.387 5.387 27 C -0.050 4.050 28 C -0.066 4.066 29 H 0.065 0.935 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.110 0.890 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.102 0.898 46 H 0.164 0.836 47 H 0.230 0.770 48 H 0.069 0.931 49 H 0.087 0.913 50 H 0.080 0.920 51 H 0.099 0.901 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.149 3.499 9.479 12.378 hybrid contribution 1.942 -0.531 -0.135 2.018 sum -5.207 2.967 9.344 11.101 Atomic orbital electron populations 1.21835 0.99005 0.98311 1.00286 1.21648 0.92149 0.99292 1.02080 1.19218 0.92761 0.90641 0.86013 0.94358 1.21728 0.92721 1.37555 1.06092 0.92592 1.24886 0.97772 0.95062 0.95591 1.69872 1.34805 1.37836 1.09694 0.86653 0.86392 0.77651 0.77939 1.19997 1.21098 1.21083 1.62500 1.58198 1.00942 1.04001 1.22048 0.98121 0.98278 0.89405 1.21824 1.01140 0.94957 0.98323 1.21888 1.01082 0.96434 0.96383 1.20947 0.79374 0.95250 0.96649 1.22648 0.97278 0.93402 1.02717 1.22302 0.94392 0.99575 1.02844 1.20885 0.89433 0.83195 0.75676 1.90667 1.18321 1.78717 1.54640 1.47589 1.06556 1.10882 1.65182 1.21539 0.95886 0.92581 0.92120 1.20909 0.76823 0.81644 0.90210 1.90648 1.52634 1.32901 1.64619 1.45697 1.54235 1.27073 1.11727 1.21414 1.00620 1.01064 0.81939 1.22117 0.98308 0.90409 0.95748 0.93458 0.95742 0.94204 0.89007 0.94779 0.92982 0.94127 0.90790 0.92153 0.91649 0.90889 0.92177 0.89584 0.89428 0.88457 0.88366 0.89763 0.83614 0.77008 0.93086 0.91328 0.92027 0.90114 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 8.79 37.16 0.33 -2.03 16 2 C -0.11 -2.40 4.96 -26.73 -0.13 -2.53 16 3 C 0.22 4.90 1.79 -68.86 -0.12 4.77 16 4 H 0.04 1.03 8.12 -51.93 -0.42 0.60 16 5 C -0.54 -13.46 7.18 -34.44 -0.25 -13.71 16 6 H 0.06 1.40 5.83 -52.49 -0.31 1.09 16 7 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 8 N -0.88 -23.89 11.30 55.43 0.63 -23.26 16 9 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.53 -9.55 1.46 -228.26 -0.33 -9.88 16 14 C 0.05 0.81 4.54 -3.83 -0.02 0.79 16 15 C -0.12 -1.60 5.62 -26.61 -0.15 -1.75 16 16 C -0.12 -1.47 4.88 -26.77 -0.13 -1.60 16 17 C 0.16 2.34 0.71 -131.53 -0.09 2.24 16 18 C -0.12 -1.49 6.18 -25.16 -0.16 -1.64 16 19 C -0.15 -1.85 6.86 -26.68 -0.18 -2.03 16 20 C 0.52 8.57 7.93 -10.79 -0.09 8.49 16 21 O -0.55 -10.87 17.69 5.56 0.10 -10.77 16 22 N -0.57 -8.86 1.91 -159.68 -0.30 -9.17 16 23 C 0.10 1.58 4.57 -5.19 -0.02 1.56 16 24 C 0.52 8.93 7.22 -10.99 -0.08 8.86 16 25 O -0.53 -11.38 15.35 5.55 0.09 -11.29 16 26 N -0.73 -10.29 3.86 -67.07 -0.26 -10.55 16 27 C 0.09 1.26 10.05 59.85 0.60 1.86 16 28 C 0.06 1.13 3.45 -4.00 -0.01 1.12 16 29 H 0.05 0.85 6.59 -51.93 -0.34 0.51 16 30 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.04 0.61 6.21 -51.93 -0.32 0.28 16 32 H 0.09 2.27 5.99 -51.93 -0.31 1.96 16 33 H 0.03 0.71 6.08 -51.93 -0.32 0.39 16 34 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.04 0.74 6.74 -51.93 -0.35 0.39 16 36 H 0.07 1.24 5.89 -51.93 -0.31 0.93 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.82 5.42 -51.93 -0.28 0.54 16 39 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.09 1.13 7.90 -51.93 -0.41 0.72 16 42 H 0.09 0.85 7.86 -51.93 -0.41 0.45 16 43 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.08 1.17 8.07 -51.92 -0.42 0.75 16 46 H 0.15 2.11 2.80 -51.93 -0.15 1.97 16 47 H 0.40 4.41 8.21 -40.82 -0.34 4.08 16 48 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.06 0.98 8.07 -51.93 -0.42 0.56 16 51 H 0.08 1.71 7.17 -51.93 -0.37 1.34 16 52 H 0.05 0.97 6.82 -51.93 -0.35 0.61 16 LS Contribution 379.65 15.07 5.72 5.72 Total: -1.00 -31.35 379.65 -8.32 -39.67 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -8.34 Total: 8.04 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -0.60 Total: 6.11 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.27 Total: -52.86 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: 0.18 Total: -22.06 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.35 -8.32 -39.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168269.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.329 kcal (2) G-P(sol) polarization free energy of solvation -31.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds