Wall clock time and date at job start Tue Mar 31 2020 20:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47277 * 2 1 4 4 H 1.08999 * 109.47159 * 303.23169 * 3 2 1 5 5 C 1.50703 * 109.47467 * 183.22351 * 3 2 1 6 6 H 1.07997 * 119.99917 * 240.00110 * 5 3 2 7 7 C 1.37878 * 119.99363 * 60.00520 * 5 3 2 8 8 N 1.31509 * 120.00340 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99278 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47530 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46637 * 120.00233 * 9 7 5 12 12 H 1.48503 * 109.47202 * 239.99478 * 9 7 5 13 13 N 1.46900 * 109.46627 * 63.22711 * 3 2 1 14 14 C 1.46843 * 111.00209 * 58.81520 * 13 3 2 15 15 C 1.53047 * 109.60883 * 186.14284 * 14 13 3 16 16 C 1.53197 * 109.22255 * 300.46836 * 15 14 13 17 17 C 1.52724 * 109.17187 * 57.01322 * 16 15 14 18 18 C 1.54285 * 109.91061 * 182.17842 * 17 16 15 19 19 C 1.54707 * 101.61235 * 266.08256 * 18 17 16 20 20 C 1.51321 * 104.21078 * 335.32994 * 19 18 17 21 21 O 1.21277 * 124.94937 * 196.22469 * 20 19 18 22 22 N 1.34530 * 110.09826 * 16.19710 * 20 19 18 23 23 C 1.46505 * 124.41374 * 180.12090 * 22 20 19 24 24 C 1.50700 * 109.46910 * 83.76679 * 23 22 20 25 25 O 1.21287 * 120.00032 * 0.02562 * 24 23 22 26 26 N 1.34776 * 119.99924 * 179.97438 * 24 23 22 27 27 C 1.46505 * 119.99799 * 180.02562 * 26 24 23 28 28 C 1.46924 * 110.99982 * 182.97570 * 13 3 2 29 29 H 1.09001 * 109.47154 * 54.91382 * 1 2 3 30 30 H 1.09007 * 109.46925 * 174.91342 * 1 2 3 31 31 H 1.08995 * 109.47287 * 294.91221 * 1 2 3 32 32 H 1.08999 * 109.47536 * 240.00569 * 2 1 3 33 33 H 1.09003 * 109.47729 * 120.00258 * 2 1 3 34 34 H 0.97003 * 119.99764 * 179.97438 * 8 7 5 35 35 H 1.08994 * 109.44896 * 66.09353 * 14 13 3 36 36 H 1.09007 * 109.42091 * 306.16598 * 14 13 3 37 37 H 1.09000 * 109.50839 * 180.54903 * 15 14 13 38 38 H 1.08996 * 109.51485 * 60.39363 * 15 14 13 39 39 H 1.08999 * 109.51984 * 297.10411 * 16 15 14 40 40 H 1.09004 * 109.56812 * 176.95032 * 16 15 14 41 41 H 1.08999 * 111.18183 * 147.93355 * 18 17 16 42 42 H 1.08998 * 110.88814 * 24.10178 * 18 17 16 43 43 H 1.08995 * 110.48317 * 216.64274 * 19 18 17 44 44 H 1.08999 * 110.48251 * 94.01333 * 19 18 17 45 45 H 1.09008 * 109.46867 * 323.77234 * 23 22 20 46 46 H 1.08997 * 109.47410 * 203.77357 * 23 22 20 47 47 H 0.96994 * 120.00016 * 0.02562 * 26 24 23 48 48 H 1.08996 * 109.47194 * 300.00450 * 27 26 24 49 49 H 1.09004 * 109.46815 * 180.02562 * 27 26 24 50 50 H 1.09001 * 109.46647 * 60.00813 * 27 26 24 51 51 H 1.09001 * 109.46175 * 54.86735 * 28 13 3 52 52 H 1.09000 * 109.45878 * 294.91719 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6302 1.9728 -0.8596 5 6 3.5449 1.4433 -0.0799 6 1 4.1273 1.8959 0.7090 7 6 4.1781 0.8662 -1.1602 8 7 3.4689 0.3146 -2.1205 9 14 6.0435 0.8678 -1.2596 10 1 6.6025 1.5450 -0.0620 11 1 6.5375 -0.5317 -1.3120 12 1 6.4734 1.5906 -2.4835 13 7 1.6150 2.1120 1.2365 14 6 2.1263 1.4074 2.4190 15 6 1.5419 2.0378 3.6853 16 6 1.9429 3.5152 3.7444 17 6 1.4615 4.2167 2.4761 18 6 1.9042 5.6946 2.4928 19 6 0.6610 6.3853 3.1018 20 6 -0.4808 5.4459 2.7800 21 8 -1.6567 5.7383 2.8318 22 7 -0.0015 4.2393 2.4274 23 6 -0.8351 3.0952 2.0502 24 6 -1.2027 3.2004 0.5925 25 8 -0.8068 4.1386 -0.0665 26 7 -1.9704 2.2516 0.0209 27 6 -2.3273 2.3537 -1.3964 28 6 2.0271 3.5223 1.2401 29 1 -0.3633 0.5907 -0.8409 30 1 -0.3633 -1.0237 -0.0911 31 1 -0.3633 0.4329 0.9320 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.9144 -0.0911 -2.8807 35 1 3.2134 1.4826 2.4445 36 1 1.8363 0.3578 2.3691 37 1 1.9301 1.5199 4.5623 38 1 0.4552 1.9561 3.6645 39 1 3.0276 3.5956 3.8157 40 1 1.4849 3.9832 4.6158 41 1 2.0983 6.0590 1.4840 42 1 2.7781 5.8313 3.1298 43 1 0.4983 7.3572 2.6362 44 1 0.7744 6.4924 4.1806 45 1 -1.7424 3.0918 2.6544 46 1 -0.2823 2.1712 2.2198 47 1 -2.2866 1.5012 0.5478 48 1 -2.8802 3.2775 -1.5662 49 1 -2.9476 1.5024 -1.6770 50 1 -1.4198 2.3571 -2.0001 51 1 1.6495 4.0132 0.3432 52 1 3.1153 3.5825 1.2559 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255168269.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:01 Heat of formation + Delta-G solvation = -71.776380 kcal Electronic energy + Delta-G solvation = -33728.903747 eV Core-core repulsion = 29727.859172 eV Total energy + Delta-G solvation = -4001.044575 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.28169 -40.06241 -39.59759 -37.60148 -35.47054 -35.20796 -33.92108 -33.56186 -32.31833 -30.46270 -29.37928 -28.42778 -26.52743 -25.72195 -25.24876 -23.73824 -22.67954 -22.01653 -21.41585 -20.64125 -19.83455 -18.45515 -18.19925 -17.64255 -17.15766 -16.73107 -16.40716 -16.29090 -16.07112 -15.97563 -15.29145 -15.12141 -14.94842 -14.67409 -14.56687 -14.44814 -14.33026 -13.98356 -13.83594 -13.37772 -13.30228 -13.17559 -13.10045 -13.05102 -13.02473 -12.76883 -12.71985 -12.57315 -12.31298 -12.10526 -12.01982 -11.68501 -11.59662 -11.46505 -11.37934 -11.01388 -10.85626 -10.80338 -10.71518 -10.39530 -9.93137 -9.56713 -8.84859 -8.00390 -6.23163 1.34633 1.38777 1.46701 1.56281 1.90309 2.06116 2.40035 2.64238 3.17406 3.25917 3.56397 3.59731 3.84030 4.06940 4.10112 4.17637 4.27877 4.33293 4.44717 4.48688 4.52422 4.58867 4.65071 4.66191 4.75105 4.77916 4.84862 4.87155 4.92927 4.97011 5.00050 5.07843 5.08280 5.11791 5.16931 5.18809 5.32864 5.42563 5.48201 5.50374 5.57241 5.60898 5.63959 5.68755 5.86245 6.12172 6.23200 6.30210 6.41112 6.70107 6.73105 6.99403 7.23545 7.47922 7.48764 8.93272 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011743 B = 0.005553 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.856842 B = 5041.500371 C = 6213.487877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.107 4.107 3 C 0.233 3.767 4 H -0.017 1.017 5 C -0.545 4.545 6 H 0.053 0.947 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.942 3.058 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.290 1.290 13 N -0.519 5.519 14 C 0.051 3.949 15 C -0.117 4.117 16 C -0.114 4.114 17 C 0.164 3.836 18 C -0.118 4.118 19 C -0.139 4.139 20 C 0.507 3.493 21 O -0.587 6.587 22 N -0.572 5.572 23 C 0.104 3.896 24 C 0.508 3.492 25 O -0.583 6.583 26 N -0.722 5.722 27 C 0.096 3.904 28 C 0.073 3.927 29 H 0.033 0.967 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.039 0.961 34 H 0.258 0.742 35 H 0.020 0.980 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.123 0.877 43 H 0.103 0.897 44 H 0.134 0.866 45 H 0.102 0.898 46 H 0.154 0.846 47 H 0.414 0.586 48 H 0.045 0.955 49 H 0.109 0.891 50 H 0.028 0.972 51 H 0.037 0.963 52 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.271 2.605 13.529 15.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.145 4.145 3 C 0.126 3.874 4 H 0.001 0.999 5 C -0.584 4.584 6 H 0.071 0.929 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.769 3.231 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.216 1.216 13 N -0.242 5.242 14 C -0.077 4.077 15 C -0.155 4.155 16 C -0.152 4.152 17 C 0.079 3.921 18 C -0.156 4.156 19 C -0.179 4.179 20 C 0.297 3.703 21 O -0.468 6.468 22 N -0.302 5.302 23 C -0.021 4.021 24 C 0.295 3.705 25 O -0.463 6.463 26 N -0.375 5.375 27 C -0.049 4.049 28 C -0.057 4.057 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.039 0.961 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.086 0.914 42 H 0.141 0.859 43 H 0.121 0.879 44 H 0.152 0.848 45 H 0.120 0.880 46 H 0.171 0.829 47 H 0.250 0.750 48 H 0.064 0.936 49 H 0.127 0.873 50 H 0.047 0.953 51 H 0.056 0.944 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.126 3.234 12.896 15.084 hybrid contribution 1.917 -0.480 -1.271 2.350 sum -5.209 2.754 11.625 13.033 Atomic orbital electron populations 1.21678 0.95912 0.99593 1.00858 1.21458 0.94918 0.97736 1.00432 1.18848 0.91170 0.91107 0.86298 0.99882 1.22033 0.94216 1.36479 1.05665 0.92883 1.25578 1.01463 0.95243 0.95612 1.70019 1.36098 1.38852 1.10164 0.85764 0.82086 0.77569 0.77714 1.19213 1.20747 1.21599 1.62419 1.57760 1.00942 1.03123 1.22119 0.97126 0.98379 0.90124 1.21787 1.01436 0.95356 0.96875 1.21892 1.01914 0.95719 0.95684 1.21024 0.78688 0.96611 0.95788 1.22701 0.98716 0.91532 1.02685 1.22345 0.91978 0.98530 1.05053 1.21636 0.89838 0.83820 0.74968 1.90638 1.20243 1.79379 1.56541 1.47733 1.07017 1.10955 1.64504 1.21642 0.96805 0.92908 0.90787 1.21449 0.76534 0.81385 0.91112 1.90628 1.54705 1.35047 1.65886 1.45638 1.53024 1.26808 1.12068 1.21442 0.99563 1.02674 0.81191 1.21959 0.97204 0.90259 0.96252 0.94796 0.93672 0.91978 0.92726 0.94208 0.93270 0.96128 0.91046 0.89414 0.90899 0.89836 0.89305 0.91415 0.85894 0.87883 0.84784 0.87985 0.82893 0.75007 0.93603 0.87286 0.95315 0.94442 0.94779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.17 8.79 71.98 0.63 -3.54 16 2 C -0.11 -4.62 4.96 30.59 0.15 -4.47 16 3 C 0.23 10.85 1.79 44.17 0.08 10.93 16 4 H -0.02 -0.96 8.12 -2.39 -0.02 -0.98 16 5 C -0.54 -27.97 7.18 25.60 0.18 -27.79 16 6 H 0.05 2.70 5.83 -2.91 -0.02 2.69 16 7 C 0.02 1.10 5.30 84.66 0.45 1.55 16 8 N -0.91 -51.42 11.30 21.45 0.24 -51.18 16 9 Si 0.94 42.72 29.54 68.60 2.03 44.74 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 13 N -0.52 -18.82 1.46 -876.09 -1.28 -20.09 16 14 C 0.05 1.57 4.54 86.33 0.39 1.96 16 15 C -0.12 -2.57 5.62 30.68 0.17 -2.39 16 16 C -0.11 -2.34 4.88 30.57 0.15 -2.19 16 17 C 0.16 4.42 0.71 3.85 0.00 4.43 16 18 C -0.12 -2.62 6.18 31.61 0.20 -2.42 16 19 C -0.14 -3.01 6.86 30.63 0.21 -2.80 16 20 C 0.51 15.98 7.93 87.89 0.70 16.68 16 21 O -0.59 -22.97 17.69 -3.02 -0.05 -23.03 16 22 N -0.57 -17.01 1.91 -777.64 -1.48 -18.49 16 23 C 0.10 3.03 4.57 85.63 0.39 3.42 16 24 C 0.51 17.79 7.22 87.66 0.63 18.42 16 25 O -0.58 -26.21 15.35 -3.05 -0.05 -26.26 16 26 N -0.72 -20.07 3.86 -484.50 -1.87 -21.94 16 27 C 0.10 2.61 10.05 127.77 1.28 3.89 16 28 C 0.07 2.66 3.45 86.18 0.30 2.96 16 29 H 0.03 1.23 6.59 -2.39 -0.02 1.22 16 30 H 0.04 1.34 8.14 -2.38 -0.02 1.33 16 31 H 0.06 1.79 6.21 -2.39 -0.01 1.78 16 32 H 0.05 2.80 5.99 -2.39 -0.01 2.79 16 33 H 0.04 1.64 6.08 -2.39 -0.01 1.63 16 34 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 35 H 0.02 0.73 6.74 -2.39 -0.02 0.71 16 36 H 0.07 2.26 5.89 -2.38 -0.01 2.25 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.07 1.53 5.42 -2.39 -0.01 1.52 16 39 H 0.08 1.62 8.13 -2.39 -0.02 1.60 16 40 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.07 1.76 7.90 -2.39 -0.02 1.74 16 42 H 0.12 1.88 7.86 -2.39 -0.02 1.86 16 43 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.10 2.62 8.07 -2.38 -0.02 2.60 16 46 H 0.15 4.14 2.80 -2.39 -0.01 4.13 16 47 H 0.41 8.49 8.21 -92.71 -0.76 7.73 16 48 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 50 H 0.03 0.97 8.07 -2.39 -0.02 0.95 16 51 H 0.04 1.69 7.17 -2.39 -0.02 1.68 16 52 H 0.03 1.34 6.82 -2.39 -0.02 1.33 16 Total: -1.00 -74.54 379.65 3.64 -70.91 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 0.18 Total: 26.71 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 5.92 Total: 18.63 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -4.39 Total: -111.70 kcal Atomic # 8 Polarization: -49.19 SS G_CDS: -0.10 Total: -49.29 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -74.54 3.64 -70.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168269.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.871 kcal (2) G-P(sol) polarization free energy of solvation -74.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds