Wall clock time and date at job start Tue Mar 31 2020 20:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47144 * 2 1 4 4 H 1.09011 * 109.46686 * 181.38082 * 3 2 1 5 5 C 1.50691 * 109.47341 * 301.38289 * 3 2 1 6 6 H 1.08003 * 120.00301 * 119.72595 * 5 3 2 7 7 C 1.37881 * 120.00079 * 300.00288 * 5 3 2 8 8 N 1.31513 * 119.99937 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00257 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46758 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47315 * 119.99660 * 9 7 5 12 12 H 1.48504 * 109.46927 * 240.00091 * 9 7 5 13 13 N 1.46903 * 109.47072 * 61.38737 * 3 2 1 14 14 C 1.48651 * 111.00221 * 63.74064 * 13 3 2 15 15 C 1.54652 * 104.65019 * 158.53356 * 14 13 3 16 16 H 1.08992 * 110.40729 * 95.20560 * 15 14 13 17 17 C 1.50700 * 110.40491 * 217.51429 * 15 14 13 18 18 O 1.21290 * 119.99764 * 36.60683 * 17 15 14 19 19 N 1.34769 * 120.00204 * 216.60223 * 17 15 14 20 20 C 1.46504 * 120.00371 * 180.02562 * 19 17 15 21 21 C 1.46503 * 119.99728 * 359.97438 * 19 17 15 22 22 C 1.53263 * 104.62712 * 336.30148 * 15 14 13 23 23 C 1.52859 * 115.78706 * 230.38086 * 22 15 14 24 24 N 1.47801 * 85.76941 * 219.50547 * 23 22 15 25 25 C 1.34767 * 134.39591 * 203.80620 * 24 23 22 26 26 C 1.50699 * 119.99938 * 0.05667 * 25 24 23 27 27 O 1.21283 * 120.00222 * 180.02562 * 25 24 23 28 28 C 1.47795 * 91.20952 * 23.84683 * 24 23 22 29 29 C 1.48812 * 110.99617 * 179.38692 * 13 3 2 30 30 H 1.09007 * 109.46738 * 305.51916 * 1 2 3 31 31 H 1.09002 * 109.47214 * 65.51585 * 1 2 3 32 32 H 1.08998 * 109.47583 * 185.51821 * 1 2 3 33 33 H 1.09005 * 109.46893 * 239.99976 * 2 1 3 34 34 H 1.09001 * 109.46975 * 120.00292 * 2 1 3 35 35 H 0.97001 * 120.00171 * 180.02562 * 8 7 5 36 36 H 1.09001 * 110.40030 * 277.32287 * 14 13 3 37 37 H 1.08999 * 110.40427 * 39.74146 * 14 13 3 38 38 H 1.09001 * 109.47069 * 89.99615 * 20 19 17 39 39 H 1.08998 * 109.47053 * 209.99819 * 20 19 17 40 40 H 1.08999 * 109.46431 * 329.99848 * 20 19 17 41 41 H 1.08996 * 109.47080 * 60.00515 * 21 19 17 42 42 H 1.09004 * 109.46761 * 180.02562 * 21 19 17 43 43 H 1.09003 * 109.47370 * 299.99822 * 21 19 17 44 44 H 1.08995 * 113.82511 * 333.71262 * 23 22 15 45 45 H 1.09004 * 113.82698 * 105.29780 * 23 22 15 46 46 H 1.09003 * 109.47336 * 59.99846 * 26 25 24 47 47 H 1.09002 * 109.47151 * 179.97438 * 26 25 24 48 48 H 1.09000 * 109.47069 * 299.99544 * 26 25 24 49 49 H 1.09002 * 113.82149 * 221.94479 * 28 24 23 50 50 H 1.09001 * 113.82871 * 90.36799 * 28 24 23 51 51 H 1.08998 * 110.46754 * 320.53547 * 29 13 3 52 52 H 1.09001 * 110.46126 * 83.11780 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1298 1.4425 -0.0248 5 6 1.5099 2.1627 -1.2129 6 1 0.8879 3.0374 -1.0926 7 6 1.8143 1.7018 -2.4762 8 7 2.5677 0.6338 -2.6227 9 14 1.1579 2.5950 -3.9798 10 1 0.3424 3.7583 -3.5475 11 1 2.2945 3.0679 -4.8101 12 1 0.3143 1.6685 -4.7768 13 7 1.5779 2.1252 1.2159 14 6 2.1550 1.4955 2.4325 15 6 2.0589 2.5889 3.5219 16 1 1.1517 2.4589 4.1119 17 6 3.2737 2.5512 4.4129 18 8 4.3625 2.2962 3.9432 19 7 3.1504 2.8009 5.7315 20 6 4.3315 2.7648 6.5975 21 6 1.8353 3.1097 6.2986 22 6 2.0082 3.9079 2.7430 23 6 2.9954 4.9846 3.1935 24 7 1.8915 5.9394 2.9606 25 6 1.8266 7.2589 2.6945 26 6 3.0930 8.0676 2.5799 27 8 0.7490 7.7955 2.5467 28 6 0.8871 4.8696 3.1371 29 6 2.0681 3.5296 1.2578 30 1 -0.3633 0.5971 0.8365 31 1 -0.3634 0.4259 -0.9353 32 1 -0.3634 -1.0229 0.0988 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.7822 0.3097 -3.5114 36 1 1.5724 0.6203 2.7202 37 1 3.1957 1.2206 2.2609 38 1 4.7830 3.7561 6.6377 39 1 4.0367 2.4589 7.6013 40 1 5.0533 2.0526 6.1978 41 1 1.1591 2.2727 6.1248 42 1 1.9333 3.2815 7.3706 43 1 1.4354 4.0049 5.8225 44 1 3.2916 4.9006 4.2391 45 1 3.8412 5.1165 2.5188 46 1 3.7086 7.6666 1.7747 47 1 2.8426 9.1060 2.3626 48 1 3.6438 8.0153 3.5190 49 1 0.0691 4.9106 2.4179 50 1 0.5464 4.7508 4.1657 51 1 3.0930 3.5867 0.8910 52 1 1.4163 4.1784 0.6727 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176704.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:08 Heat of formation + Delta-G solvation = -15.336760 kcal Electronic energy + Delta-G solvation = -31961.528738 eV Core-core repulsion = 27962.931568 eV Total energy + Delta-G solvation = -3998.597170 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.41494 -39.51591 -38.22715 -36.80941 -35.64464 -33.89529 -31.61347 -30.67049 -30.25556 -28.46419 -28.10336 -26.77632 -26.23095 -25.88245 -24.97776 -23.01892 -21.86835 -20.22239 -19.14712 -18.93923 -18.16736 -17.31716 -16.95325 -16.35465 -16.22522 -15.85234 -15.51767 -15.31675 -15.12811 -14.57665 -14.10990 -13.85512 -13.56321 -13.44421 -13.30201 -12.98626 -12.88704 -12.78606 -12.76153 -12.63582 -12.53097 -12.30287 -12.20625 -12.14054 -11.77344 -11.47066 -11.35072 -11.08437 -10.95576 -10.88290 -10.68157 -10.50563 -10.33114 -9.99336 -9.76547 -9.73315 -9.63830 -9.40560 -8.88839 -8.80563 -8.70514 -8.41745 -7.37920 -5.99749 -4.03300 2.49424 2.66528 2.74165 2.85310 3.30672 3.39315 3.44013 4.08652 4.38556 4.43081 4.55451 4.68358 4.77509 4.82287 4.97100 5.01690 5.11148 5.12294 5.20013 5.25474 5.29350 5.31488 5.33166 5.35093 5.43566 5.48002 5.59084 5.60056 5.69116 5.76187 5.92433 6.00131 6.18627 6.25936 6.36542 6.40792 6.46129 6.59203 6.64435 6.79151 7.09818 7.13772 7.19868 7.38085 7.57964 7.67595 7.69973 7.84333 8.02974 8.08716 8.15130 8.30665 8.51079 9.01576 9.60917 11.06855 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010059 B = 0.004508 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.893727 B = 6209.020289 C = 8043.027995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.108 4.108 3 C 0.208 3.792 4 H 0.003 0.997 5 C -0.497 4.497 6 H 0.061 0.939 7 C 0.062 3.938 8 N -0.891 5.891 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.496 5.496 14 C 0.047 3.953 15 C -0.101 4.101 16 H 0.100 0.900 17 C 0.523 3.477 18 O -0.527 6.527 19 N -0.628 5.628 20 C 0.085 3.915 21 C 0.078 3.922 22 C -0.080 4.080 23 C 0.110 3.890 24 N -0.640 5.640 25 C 0.534 3.466 26 C -0.169 4.169 27 O -0.550 6.550 28 C 0.124 3.876 29 C 0.079 3.921 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.014 0.986 33 H 0.090 0.910 34 H 0.012 0.988 35 H 0.259 0.741 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.083 0.917 49 H 0.093 0.907 50 H 0.082 0.918 51 H 0.049 0.951 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.564 5.920 19.379 20.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.147 4.147 3 C 0.102 3.898 4 H 0.020 0.980 5 C -0.535 4.535 6 H 0.079 0.921 7 C -0.139 4.139 8 N -0.530 5.530 9 Si 0.719 3.281 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.221 5.221 14 C -0.082 4.082 15 C -0.124 4.124 16 H 0.118 0.882 17 C 0.311 3.689 18 O -0.402 6.402 19 N -0.363 5.363 20 C -0.058 4.058 21 C -0.066 4.066 22 C -0.082 4.082 23 C -0.013 4.013 24 N -0.376 5.376 25 C 0.324 3.676 26 C -0.228 4.228 27 O -0.428 6.428 28 C 0.002 3.998 29 C -0.050 4.050 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.033 0.967 33 H 0.109 0.891 34 H 0.031 0.969 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.100 0.900 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.110 0.890 48 H 0.102 0.898 49 H 0.112 0.888 50 H 0.099 0.901 51 H 0.067 0.933 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.072 6.151 18.823 19.831 hybrid contribution 0.643 0.387 -0.663 1.001 sum 1.715 6.539 18.160 19.377 Atomic orbital electron populations 1.21456 0.97231 0.97212 1.01838 1.21507 0.95250 0.97914 0.99994 1.19471 0.93377 0.91293 0.85699 0.97964 1.21041 1.30944 1.11991 0.89549 0.92070 1.24877 0.95207 0.95035 0.98828 1.69891 1.37444 1.23115 1.22557 0.86552 0.78691 0.79827 0.83053 1.19737 1.21222 1.21072 1.65629 1.53409 1.00512 1.02517 1.23058 0.99755 0.95216 0.90201 1.21982 0.96353 0.97390 0.96657 0.88204 1.20616 0.90950 0.75548 0.81792 1.90720 1.28283 1.47284 1.73882 1.47848 1.09021 1.71351 1.08069 1.21648 0.88312 1.02121 0.93695 1.21869 0.84170 1.01127 0.99389 1.22445 0.95761 0.91439 0.98539 1.23307 0.92235 0.84820 1.00922 1.50084 1.10658 1.06523 1.70363 1.20443 0.91477 0.80019 0.75638 1.21861 0.95935 1.00950 1.04071 1.90719 1.31293 1.69656 1.51134 1.23160 0.93687 0.81689 1.01278 1.22512 0.99825 0.92857 0.89772 0.93502 0.92665 0.96714 0.89147 0.96913 0.93078 0.90458 0.92611 0.92990 0.91391 0.90475 0.91582 0.90475 0.92015 0.90008 0.89345 0.89293 0.89047 0.89826 0.88818 0.90052 0.93306 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.58 9.46 37.16 0.35 -2.22 16 2 C -0.11 -2.52 5.31 -26.73 -0.14 -2.67 16 3 C 0.21 4.99 1.52 -68.87 -0.10 4.89 16 4 H 0.00 0.08 7.98 -51.92 -0.41 -0.34 16 5 C -0.50 -13.00 6.87 -34.44 -0.24 -13.24 16 6 H 0.06 1.63 7.03 -52.48 -0.37 1.26 16 7 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 8 N -0.89 -24.90 11.33 55.43 0.63 -24.27 16 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.50 -9.83 4.39 -223.57 -0.98 -10.81 16 14 C 0.05 0.80 5.02 -1.99 -0.01 0.79 16 15 C -0.10 -1.34 2.73 -90.77 -0.25 -1.58 16 16 H 0.10 1.07 6.14 -51.93 -0.32 0.76 16 17 C 0.52 6.87 4.65 -10.99 -0.05 6.82 16 18 O -0.53 -8.96 15.48 5.55 0.09 -8.87 16 19 N -0.63 -6.01 3.07 -189.51 -0.58 -6.59 16 20 C 0.08 0.68 10.41 59.85 0.62 1.30 16 21 C 0.08 0.49 9.39 59.85 0.56 1.06 16 22 C -0.08 -1.10 1.16 -154.48 -0.18 -1.28 16 23 C 0.11 1.35 7.09 -3.40 -0.02 1.33 16 24 N -0.64 -8.46 3.61 -183.76 -0.66 -9.12 16 25 C 0.53 7.64 8.17 -10.99 -0.09 7.55 16 26 C -0.17 -1.69 10.07 36.01 0.36 -1.33 16 27 O -0.55 -10.11 17.81 5.56 0.10 -10.01 16 28 C 0.12 1.57 7.96 -3.40 -0.03 1.54 16 29 C 0.08 1.43 5.10 -2.56 -0.01 1.42 16 30 H 0.05 0.95 7.48 -51.92 -0.39 0.56 16 31 H 0.05 1.29 7.39 -51.93 -0.38 0.91 16 32 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.09 2.38 6.11 -51.93 -0.32 2.06 16 34 H 0.01 0.27 6.99 -51.93 -0.36 -0.10 16 35 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.08 1.27 7.68 -51.93 -0.40 0.87 16 37 H 0.06 1.10 6.79 -51.93 -0.35 0.75 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.37 7.92 -51.93 -0.41 -0.04 16 40 H 0.08 0.75 7.42 -51.93 -0.39 0.37 16 41 H 0.07 0.39 7.45 -51.93 -0.39 0.00 16 42 H 0.08 0.33 7.80 -51.93 -0.40 -0.08 16 43 H 0.06 0.39 6.66 -51.93 -0.35 0.04 16 44 H 0.08 0.90 6.67 -51.93 -0.35 0.56 16 45 H 0.09 1.12 8.05 -51.93 -0.42 0.70 16 46 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.09 0.87 8.12 -51.93 -0.42 0.44 16 48 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.09 1.34 8.02 -51.93 -0.42 0.93 16 50 H 0.08 0.81 6.70 -51.93 -0.35 0.47 16 51 H 0.05 0.98 7.87 -51.93 -0.41 0.57 16 52 H 0.08 1.66 7.24 -51.93 -0.38 1.29 16 LS Contribution 401.15 15.07 6.05 6.05 Total: -1.00 -32.81 401.15 -8.51 -41.33 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -8.80 Total: 0.17 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 0.68 Total: 5.94 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: -1.60 Total: -50.80 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.18 Total: -18.89 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.81 -8.51 -41.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176704.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.990 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds