Wall clock time and date at job start Tue Mar 31 2020 20:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47037 * 2 1 4 4 H 1.08999 * 109.47392 * 54.99678 * 3 2 1 5 5 C 1.50706 * 109.46814 * 174.99798 * 3 2 1 6 6 H 1.08002 * 119.99360 * 119.99830 * 5 3 2 7 7 C 1.37869 * 120.00041 * 299.99763 * 5 3 2 8 8 N 1.31516 * 119.99786 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 120.00098 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.46800 * 90.00180 * 9 7 5 11 11 H 1.48500 * 109.47095 * 209.99775 * 9 7 5 12 12 H 1.48494 * 109.47196 * 330.00387 * 9 7 5 13 13 N 1.46895 * 109.46858 * 294.99531 * 3 2 1 14 14 C 1.48653 * 111.00408 * 295.12666 * 13 3 2 15 15 C 1.54646 * 104.65484 * 201.47221 * 14 13 3 16 16 H 1.09003 * 110.40770 * 264.91504 * 15 14 13 17 17 C 1.50698 * 110.50729 * 142.53955 * 15 14 13 18 18 O 1.21287 * 119.99446 * 316.40083 * 17 15 14 19 19 N 1.34777 * 120.00340 * 136.40179 * 17 15 14 20 20 C 1.46492 * 120.00140 * 179.97438 * 19 17 15 21 21 C 1.46496 * 119.99786 * 359.97438 * 19 17 15 22 22 C 1.53260 * 104.62791 * 23.69751 * 15 14 13 23 23 C 1.52861 * 115.78433 * 129.60793 * 22 15 14 24 24 N 1.47789 * 85.90789 * 140.43717 * 23 22 15 25 25 C 1.34780 * 134.39695 * 156.17499 * 24 23 22 26 26 C 1.50697 * 119.99892 * 180.02562 * 25 24 23 27 27 O 1.21272 * 119.99625 * 0.02562 * 25 24 23 28 28 C 1.48053 * 91.10779 * 336.25976 * 24 23 22 29 29 C 1.48812 * 110.99749 * 179.48027 * 13 3 2 30 30 H 1.08997 * 109.47684 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47249 * 300.00242 * 1 2 3 32 32 H 1.09005 * 109.46855 * 60.00021 * 1 2 3 33 33 H 1.08992 * 109.47492 * 239.99598 * 2 1 3 34 34 H 1.09003 * 109.47157 * 119.99266 * 2 1 3 35 35 H 0.97006 * 119.99676 * 179.97438 * 8 7 5 36 36 H 1.08999 * 110.39956 * 82.67763 * 14 13 3 37 37 H 1.09006 * 110.40121 * 320.26662 * 14 13 3 38 38 H 1.09002 * 109.46959 * 89.99918 * 20 19 17 39 39 H 1.08996 * 109.47218 * 209.99581 * 20 19 17 40 40 H 1.09002 * 109.47219 * 330.00155 * 20 19 17 41 41 H 1.09001 * 109.47236 * 60.00081 * 21 19 17 42 42 H 1.09001 * 109.47454 * 180.02562 * 21 19 17 43 43 H 1.09004 * 109.47398 * 300.00372 * 21 19 17 44 44 H 1.09001 * 113.82537 * 254.70668 * 23 22 15 45 45 H 1.09001 * 113.82662 * 26.16443 * 23 22 15 46 46 H 1.09002 * 109.47268 * 0.02562 * 26 25 24 47 47 H 1.09001 * 109.46928 * 120.00396 * 26 25 24 48 48 H 1.09000 * 109.46838 * 240.00163 * 26 25 24 49 49 H 1.09000 * 113.71420 * 269.52034 * 28 24 23 50 50 H 1.09006 * 114.00557 * 137.99273 * 28 24 23 51 51 H 1.08997 * 110.46857 * 39.45707 * 29 13 3 52 52 H 1.08997 * 110.46427 * 276.87161 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8784 1.2280 8 7 5.4539 0.8804 1.3363 9 14 3.0962 0.1102 2.5708 10 1 2.8743 -1.3259 2.2647 11 1 3.7940 0.2361 3.8756 12 1 1.7880 0.8095 2.6395 13 7 1.6514 2.0992 -1.2553 14 6 2.3207 1.4616 -2.4195 15 6 2.2820 2.5370 -3.5301 16 1 1.4185 2.3840 -4.1774 17 6 3.5541 2.5080 -4.3375 18 8 4.6253 2.4054 -3.7779 19 7 3.5016 2.5962 -5.6814 20 6 4.7382 2.5686 -6.4662 21 6 2.2077 2.7197 -6.3573 22 6 2.1568 3.8663 -2.7776 23 6 3.1554 4.9528 -3.1765 24 7 2.0250 5.8945 -3.0374 25 6 1.9233 7.2171 -2.7988 26 6 0.5657 7.8662 -2.7192 27 8 2.9245 7.8847 -2.6482 28 6 1.0505 4.8029 -3.2629 29 6 2.1206 3.5111 -1.2859 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 5.8769 0.4826 2.1134 36 1 1.7734 0.5725 -2.7323 37 1 3.3515 1.2071 -2.1727 38 1 4.9810 1.5381 -6.7255 39 1 4.6031 3.1504 -7.3779 40 1 5.5508 2.9966 -5.8791 41 1 1.7033 3.6230 -6.0142 42 1 2.3645 2.7775 -7.4344 43 1 1.5926 1.8500 -6.1261 44 1 3.9507 5.1089 -2.4475 45 1 3.5258 4.8572 -4.1972 46 1 -0.2067 7.1138 -2.8783 47 1 0.4358 8.3174 -1.7355 48 1 0.4860 8.6370 -3.4858 49 1 0.7833 4.6633 -4.3104 50 1 0.1835 4.8391 -2.6032 51 1 3.1168 3.5912 -0.8508 52 1 1.4198 4.1571 -0.7573 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:14 Heat of formation + Delta-G solvation = -6.490859 kcal Electronic energy + Delta-G solvation = -32185.643777 eV Core-core repulsion = 28187.430194 eV Total energy + Delta-G solvation = -3998.213583 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.31497 -39.39443 -38.23229 -36.96305 -35.46290 -33.77449 -31.93930 -30.97610 -30.29041 -28.50546 -27.96114 -27.04283 -26.40745 -25.89961 -24.73355 -22.80828 -21.95818 -20.15439 -19.27456 -18.98111 -18.13358 -17.24427 -16.98385 -16.74134 -16.16116 -15.89196 -15.44763 -15.26524 -15.24815 -14.41592 -14.09349 -13.93710 -13.63623 -13.33221 -13.16201 -12.96394 -12.86449 -12.82082 -12.69123 -12.65803 -12.54679 -12.40730 -12.18224 -12.08516 -11.83245 -11.70676 -11.37020 -11.32233 -11.05701 -10.93032 -10.86223 -10.49176 -10.39238 -10.05369 -9.73236 -9.67140 -9.58288 -9.49536 -9.21513 -8.70035 -8.67254 -8.53435 -7.38400 -6.06403 -4.08255 2.63315 2.75481 2.83088 2.99818 3.26827 3.37949 3.39792 4.18256 4.39804 4.42333 4.63257 4.73969 4.83235 4.93570 5.06711 5.07008 5.10605 5.17898 5.23788 5.29801 5.30774 5.35054 5.39380 5.43320 5.49687 5.54436 5.60852 5.71104 5.78730 5.88556 5.90721 5.95111 5.99336 6.06383 6.18176 6.33496 6.35565 6.42636 6.63686 6.66127 6.70722 6.81845 6.87202 7.04603 7.14974 7.33360 7.52239 7.72891 7.80402 7.99765 8.18309 8.32734 8.46339 8.98728 9.54895 11.05717 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009954 B = 0.004611 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.255367 B = 6071.504272 C = 7130.792092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C 0.171 3.829 4 H 0.041 0.959 5 C -0.549 4.549 6 H 0.086 0.914 7 C 0.076 3.924 8 N -0.892 5.892 9 Si 0.884 3.116 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.496 5.496 14 C 0.046 3.954 15 C -0.100 4.100 16 H 0.095 0.905 17 C 0.518 3.482 18 O -0.511 6.511 19 N -0.630 5.630 20 C 0.085 3.915 21 C 0.082 3.918 22 C -0.075 4.075 23 C 0.119 3.881 24 N -0.641 5.641 25 C 0.531 3.469 26 C -0.165 4.165 27 O -0.551 6.551 28 C 0.117 3.883 29 C 0.062 3.938 30 H 0.033 0.967 31 H 0.041 0.959 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.263 0.737 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.093 0.907 48 H 0.091 0.909 49 H 0.084 0.916 50 H 0.092 0.908 51 H 0.077 0.923 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.368 5.049 -16.159 21.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.158 4.158 3 C 0.063 3.937 4 H 0.058 0.942 5 C -0.587 4.587 6 H 0.104 0.896 7 C -0.127 4.127 8 N -0.529 5.529 9 Si 0.715 3.285 10 H -0.206 1.206 11 H -0.227 1.227 12 H -0.189 1.189 13 N -0.220 5.220 14 C -0.083 4.083 15 C -0.123 4.123 16 H 0.113 0.887 17 C 0.305 3.695 18 O -0.385 6.385 19 N -0.367 5.367 20 C -0.057 4.057 21 C -0.062 4.062 22 C -0.077 4.077 23 C -0.004 4.004 24 N -0.377 5.377 25 C 0.322 3.678 26 C -0.225 4.225 27 O -0.429 6.429 28 C -0.006 4.006 29 C -0.066 4.066 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.108 0.892 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.112 0.888 48 H 0.110 0.890 49 H 0.102 0.898 50 H 0.111 0.889 51 H 0.096 0.904 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.697 5.490 -15.625 20.869 hybrid contribution 0.406 -0.573 0.647 0.955 sum -12.290 4.917 -14.978 19.989 Atomic orbital electron populations 1.21743 0.97390 0.99364 1.01596 1.21887 0.93946 0.99173 1.00754 1.19834 0.95018 0.90680 0.88217 0.94150 1.21636 0.90327 1.39335 1.07423 0.89592 1.24975 0.94642 0.95327 0.97748 1.69937 1.08810 1.44646 1.29493 0.86908 0.80731 0.79798 0.81077 1.20618 1.22674 1.18924 1.65815 1.51577 1.00970 1.03594 1.23112 1.01956 0.94403 0.88827 1.21971 0.95387 0.97345 0.97575 0.88678 1.20618 0.91585 0.75738 0.81549 1.90809 1.30793 1.46995 1.69868 1.47840 1.07426 1.75024 1.06383 1.21628 0.87240 1.01542 0.95325 1.21782 0.85038 1.01566 0.97791 1.22307 0.95464 0.91642 0.98259 1.23178 0.91793 0.83953 1.01438 1.50250 1.10780 1.06055 1.70622 1.20474 0.91809 0.79808 0.75757 1.21791 0.93954 1.01709 1.04997 1.90726 1.39426 1.61799 1.50963 1.23305 0.94099 0.82318 1.00836 1.22680 1.01796 0.91547 0.90562 0.94821 0.93941 0.91978 0.92417 0.93464 0.92708 0.91067 0.89270 0.92905 0.91633 0.90508 0.92342 0.90667 0.91817 0.89248 0.90331 0.90644 0.88801 0.89019 0.89844 0.88945 0.90449 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.80 37.16 0.36 -2.08 16 2 C -0.12 -2.48 4.84 -26.73 -0.13 -2.61 16 3 C 0.17 3.79 1.42 -68.86 -0.10 3.69 16 4 H 0.04 0.95 7.20 -51.93 -0.37 0.58 16 5 C -0.55 -14.77 7.07 -34.44 -0.24 -15.01 16 6 H 0.09 2.59 5.96 -52.49 -0.31 2.28 16 7 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 8 N -0.89 -27.35 13.96 55.43 0.77 -26.58 16 9 Si 0.88 21.74 24.41 -169.99 -4.15 17.59 16 10 H -0.28 -6.71 6.83 56.52 0.39 -6.33 16 11 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.26 -6.18 6.53 56.52 0.37 -5.81 16 13 N -0.50 -9.18 4.85 -223.57 -1.08 -10.27 16 14 C 0.05 0.81 4.84 -1.99 -0.01 0.80 16 15 C -0.10 -1.39 2.81 -90.77 -0.26 -1.65 16 16 H 0.10 1.00 5.96 -51.93 -0.31 0.69 16 17 C 0.52 7.94 4.60 -10.99 -0.05 7.89 16 18 O -0.51 -10.49 15.46 5.55 0.09 -10.40 16 19 N -0.63 -7.20 3.27 -189.52 -0.62 -7.82 16 20 C 0.09 0.88 10.41 59.84 0.62 1.50 16 21 C 0.08 0.58 9.32 59.84 0.56 1.13 16 22 C -0.07 -1.06 1.16 -154.45 -0.18 -1.24 16 23 C 0.12 1.84 7.13 -3.41 -0.02 1.81 16 24 N -0.64 -8.66 3.63 -182.50 -0.66 -9.32 16 25 C 0.53 7.66 8.17 -10.99 -0.09 7.57 16 26 C -0.17 -1.51 10.34 36.00 0.37 -1.14 16 27 O -0.55 -10.58 17.83 5.56 0.10 -10.48 16 28 C 0.12 1.21 7.26 -3.26 -0.02 1.19 16 29 C 0.06 1.11 5.69 -2.56 -0.01 1.10 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.98 7.75 -51.93 -0.40 0.57 16 33 H 0.06 1.18 6.86 -51.93 -0.36 0.82 16 34 H 0.05 1.06 3.22 -51.93 -0.17 0.90 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.07 1.16 7.61 -51.93 -0.39 0.77 16 37 H 0.09 2.03 4.91 -51.93 -0.26 1.77 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.48 7.92 -51.93 -0.41 0.07 16 40 H 0.08 0.96 7.42 -51.93 -0.39 0.57 16 41 H 0.06 0.36 7.25 -51.93 -0.38 -0.01 16 42 H 0.07 0.38 7.79 -51.93 -0.40 -0.03 16 43 H 0.06 0.41 7.54 -51.93 -0.39 0.01 16 44 H 0.09 1.66 8.05 -51.93 -0.42 1.24 16 45 H 0.08 1.17 6.82 -51.93 -0.35 0.82 16 46 H 0.07 0.53 7.25 -51.93 -0.38 0.15 16 47 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.08 0.64 7.36 -51.93 -0.38 0.25 16 50 H 0.09 0.85 7.89 -51.93 -0.41 0.44 16 51 H 0.08 1.72 6.20 -51.93 -0.32 1.40 16 52 H 0.07 1.21 7.89 -51.93 -0.41 0.80 16 LS Contribution 392.04 15.07 5.91 5.91 Total: -1.00 -35.55 392.04 -7.46 -43.00 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -8.51 Total: 3.33 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 0.70 Total: 5.03 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -1.59 Total: -53.98 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: 0.19 Total: -20.88 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.15 Total: 17.59 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.55 -7.46 -43.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.513 kcal (2) G-P(sol) polarization free energy of solvation -35.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds