Wall clock time and date at job start Tue Mar 31 2020 20:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47138 * 2 1 4 4 H 1.09004 * 109.46905 * 178.64064 * 3 2 1 5 5 C 1.50698 * 109.46780 * 58.64097 * 3 2 1 6 6 H 1.08001 * 119.99522 * 239.99805 * 5 3 2 7 7 C 1.37875 * 120.00306 * 60.00001 * 5 3 2 8 8 N 1.31515 * 119.99715 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99807 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47168 * 60.00465 * 9 7 5 11 11 H 1.48507 * 109.46974 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47680 * 299.99830 * 9 7 5 13 13 N 1.46896 * 109.46935 * 298.63863 * 3 2 1 14 14 C 1.48973 * 111.14658 * 297.47088 * 13 3 2 15 15 C 1.54645 * 104.69158 * 201.52118 * 14 13 3 16 16 H 1.09006 * 110.40515 * 264.91986 * 15 14 13 17 17 C 1.50696 * 110.50538 * 142.54297 * 15 14 13 18 18 O 1.21279 * 120.00272 * 315.89165 * 17 15 14 19 19 N 1.34785 * 120.00108 * 135.89197 * 17 15 14 20 20 C 1.46493 * 120.00177 * 180.02562 * 19 17 15 21 21 C 1.46505 * 119.99593 * 359.97438 * 19 17 15 22 22 C 1.53268 * 104.62818 * 23.70558 * 15 14 13 23 23 C 1.52858 * 115.78138 * 129.60553 * 22 15 14 24 24 N 1.47798 * 85.76795 * 94.43932 * 23 22 15 25 25 C 1.34772 * 134.38998 * 203.83898 * 24 23 22 26 26 C 1.50698 * 120.00280 * 0.02562 * 25 24 23 27 27 O 1.21285 * 120.00068 * 180.02562 * 25 24 23 28 28 C 1.47788 * 91.21530 * 23.84513 * 24 23 22 29 29 C 1.48811 * 110.99518 * 181.93324 * 13 3 2 30 30 H 1.08995 * 109.47333 * 174.43416 * 1 2 3 31 31 H 1.09003 * 109.46848 * 294.43035 * 1 2 3 32 32 H 1.08999 * 109.46902 * 54.42869 * 1 2 3 33 33 H 1.08998 * 109.47205 * 240.00308 * 2 1 3 34 34 H 1.08995 * 109.47325 * 120.00169 * 2 1 3 35 35 H 0.97003 * 119.99455 * 180.02562 * 8 7 5 36 36 H 1.09003 * 110.37699 * 82.71311 * 14 13 3 37 37 H 1.09000 * 110.48364 * 320.38090 * 14 13 3 38 38 H 1.08993 * 109.47204 * 89.99590 * 20 19 17 39 39 H 1.09002 * 109.46969 * 210.00452 * 20 19 17 40 40 H 1.09001 * 109.46659 * 329.99583 * 20 19 17 41 41 H 1.09005 * 109.47026 * 60.00231 * 21 19 17 42 42 H 1.08999 * 109.46517 * 179.97438 * 21 19 17 43 43 H 1.09001 * 109.47179 * 300.00474 * 21 19 17 44 44 H 1.08997 * 113.82030 * 208.65538 * 23 22 15 45 45 H 1.08994 * 113.82119 * 340.22994 * 23 22 15 46 46 H 1.08995 * 109.47933 * 89.99196 * 26 25 24 47 47 H 1.09007 * 109.47322 * 209.99717 * 26 25 24 48 48 H 1.09008 * 109.46723 * 329.99368 * 26 25 24 49 49 H 1.08993 * 113.82816 * 221.94208 * 28 24 23 50 50 H 1.09005 * 113.93766 * 90.37150 * 28 24 23 51 51 H 1.08993 * 110.46922 * 39.45859 * 29 13 3 52 52 H 1.08997 * 110.46267 * 276.99724 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1298 1.4426 0.0244 5 6 1.5103 2.1626 1.2133 6 1 0.8919 3.0398 1.0933 7 6 1.8152 1.7015 2.4764 8 7 2.5688 0.6335 2.6223 9 14 1.1592 2.5944 3.9802 10 1 -0.3254 2.5948 3.9472 11 1 1.6273 1.9043 5.2090 12 1 1.6546 3.9943 3.9801 13 7 1.5774 2.1255 -1.2155 14 6 2.1302 1.4790 -2.4386 15 6 2.0419 2.5688 -3.5322 16 1 1.1248 2.4540 -4.1100 17 6 3.2442 2.5057 -4.4386 18 8 4.3529 2.3682 -3.9667 19 7 3.0873 2.6021 -5.7738 20 6 4.2559 2.5401 -6.6550 21 6 1.7479 2.7676 -6.3439 22 6 2.0243 3.8923 -2.7593 23 6 3.0262 4.9481 -3.2260 24 7 1.9185 5.4778 -4.0486 25 6 1.8493 6.2175 -5.1731 26 6 3.1139 6.6773 -5.8516 27 8 0.7693 6.5132 -5.6390 28 6 0.9170 4.8728 -3.1459 29 6 2.0938 3.5199 -1.2730 30 1 -0.3634 -1.0228 -0.0997 31 1 -0.3633 0.4250 0.9357 32 1 -0.3633 0.5978 -0.8359 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.7830 0.3089 3.5110 36 1 1.5285 0.6133 -2.7153 37 1 3.1674 1.1844 -2.2786 38 1 4.4451 1.5040 -6.9353 39 1 4.0666 3.1305 -7.5516 40 1 5.1256 2.9401 -6.1337 41 1 1.3000 3.6839 -5.9593 42 1 1.8201 2.8269 -7.4299 43 1 1.1271 1.9156 -6.0665 44 1 3.3516 5.6257 -2.4366 45 1 3.8531 4.5430 -3.8093 46 1 3.4278 5.9299 -6.5802 47 1 2.9305 7.6245 -6.3588 48 1 3.8984 6.8101 -5.1065 49 1 0.0792 4.4082 -3.6658 50 1 0.6036 5.5262 -2.3316 51 1 3.1234 3.5600 -0.9179 52 1 1.4622 4.1847 -0.6838 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176709.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:17 Heat of formation + Delta-G solvation = -14.165871 kcal Electronic energy + Delta-G solvation = -32255.525354 eV Core-core repulsion = 28256.978957 eV Total energy + Delta-G solvation = -3998.546396 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.48777 -39.40888 -38.30174 -36.81182 -35.61072 -33.88091 -31.58575 -30.74181 -30.24815 -28.66887 -28.07580 -26.72690 -26.21946 -25.77763 -24.94456 -23.05336 -21.85901 -20.14824 -19.24862 -19.01871 -18.06135 -17.27857 -17.02261 -16.33409 -16.15373 -15.74684 -15.68281 -15.38865 -15.14075 -14.63547 -14.19364 -13.86607 -13.56365 -13.44498 -13.18524 -12.91484 -12.88668 -12.79969 -12.69842 -12.64502 -12.40643 -12.37092 -12.19895 -12.16098 -11.93782 -11.43527 -11.34273 -11.09300 -10.95790 -10.89128 -10.72514 -10.49510 -10.35582 -9.99767 -9.87044 -9.70346 -9.63339 -9.37263 -8.84441 -8.82536 -8.75214 -8.42402 -7.39091 -6.00655 -4.04573 2.51313 2.56659 2.76883 2.86902 3.31493 3.36836 3.38983 4.11225 4.32723 4.41213 4.58458 4.67182 4.81530 4.87237 5.00012 5.04514 5.10273 5.15362 5.18180 5.28972 5.32679 5.36486 5.37511 5.41508 5.45453 5.53056 5.56502 5.60638 5.64142 5.74063 5.82932 5.94976 6.20001 6.27238 6.34574 6.40499 6.45058 6.55064 6.62969 6.78058 7.08303 7.16753 7.19736 7.37088 7.56328 7.62532 7.68834 7.82501 8.02178 8.06284 8.11951 8.29690 8.49570 8.99461 9.59376 11.05932 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015038 B = 0.003778 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.541788 B = 7409.958125 C = 8309.631940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.109 4.109 3 C 0.208 3.792 4 H 0.003 0.997 5 C -0.497 4.497 6 H 0.061 0.939 7 C 0.062 3.938 8 N -0.891 5.891 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.494 5.494 14 C 0.048 3.952 15 C -0.090 4.090 16 H 0.097 0.903 17 C 0.528 3.472 18 O -0.532 6.532 19 N -0.623 5.623 20 C 0.085 3.915 21 C 0.079 3.921 22 C -0.082 4.082 23 C 0.105 3.895 24 N -0.642 5.642 25 C 0.532 3.468 26 C -0.168 4.168 27 O -0.554 6.554 28 C 0.127 3.873 29 C 0.066 3.934 30 H 0.014 0.986 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.012 0.988 34 H 0.090 0.910 35 H 0.261 0.739 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.077 0.923 49 H 0.084 0.916 50 H 0.094 0.906 51 H 0.051 0.949 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.474 6.068 -17.635 18.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.147 4.147 3 C 0.102 3.898 4 H 0.020 0.980 5 C -0.536 4.536 6 H 0.079 0.921 7 C -0.140 4.140 8 N -0.530 5.530 9 Si 0.721 3.279 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.219 5.219 14 C -0.081 4.081 15 C -0.112 4.112 16 H 0.115 0.885 17 C 0.316 3.684 18 O -0.408 6.408 19 N -0.358 5.358 20 C -0.058 4.058 21 C -0.064 4.064 22 C -0.084 4.084 23 C -0.018 4.018 24 N -0.378 5.378 25 C 0.323 3.677 26 C -0.227 4.227 27 O -0.432 6.432 28 C 0.006 3.994 29 C -0.063 4.063 30 H 0.033 0.967 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.030 0.970 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.112 0.888 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.110 0.890 48 H 0.096 0.904 49 H 0.103 0.897 50 H 0.112 0.888 51 H 0.069 0.931 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.993 6.125 -17.651 18.710 hybrid contribution 0.617 0.405 0.784 1.076 sum 1.609 6.530 -16.868 18.159 Atomic orbital electron populations 1.21455 0.97220 0.97218 1.01847 1.21518 0.95257 0.97988 0.99981 1.19469 0.93381 0.91262 0.85715 0.97963 1.20944 1.31223 1.11924 0.89503 0.92117 1.24882 0.95191 0.95067 0.98825 1.69874 1.37263 1.23077 1.22795 0.86649 0.79344 0.79703 0.82226 1.20253 1.21475 1.20423 1.65720 1.53344 1.00608 1.02227 1.23102 0.99687 0.95185 0.90161 1.21833 0.96596 0.96528 0.96200 0.88529 1.20552 0.90950 0.74908 0.81954 1.90712 1.26606 1.48603 1.74911 1.47800 1.07968 1.73708 1.06294 1.21642 0.88940 1.01616 0.93583 1.21838 0.83366 1.01988 0.99223 1.22289 0.95878 0.92383 0.97800 1.23434 0.91754 0.93510 0.93092 1.50316 1.11023 1.52532 1.23958 1.20397 0.91329 0.76253 0.79734 1.21824 0.95887 1.03406 1.01617 1.90718 1.30900 1.56655 1.64976 1.23172 0.93002 0.91988 0.91262 1.22675 0.99803 0.93379 0.90432 0.96736 0.92617 0.93520 0.96972 0.89143 0.92953 0.90504 0.92864 0.92811 0.91534 0.90610 0.91806 0.90627 0.91774 0.88783 0.89445 0.89323 0.89019 0.90436 0.89734 0.88823 0.93109 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.55 9.46 37.16 0.35 -2.20 16 2 C -0.11 -2.52 5.29 -26.73 -0.14 -2.66 16 3 C 0.21 4.90 1.53 -68.86 -0.11 4.80 16 4 H 0.00 0.07 7.99 -51.93 -0.41 -0.34 16 5 C -0.50 -12.64 6.90 -34.44 -0.24 -12.88 16 6 H 0.06 1.54 7.10 -52.49 -0.37 1.16 16 7 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 8 N -0.89 -24.54 11.33 55.43 0.63 -23.91 16 9 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.49 -9.58 4.40 -223.29 -0.98 -10.57 16 14 C 0.05 0.82 4.99 -1.81 -0.01 0.81 16 15 C -0.09 -1.25 2.82 -90.77 -0.26 -1.51 16 16 H 0.10 1.21 5.77 -51.93 -0.30 0.91 16 17 C 0.53 7.34 4.80 -10.98 -0.05 7.28 16 18 O -0.53 -9.17 14.79 5.56 0.08 -9.09 16 19 N -0.62 -6.74 3.27 -189.52 -0.62 -7.36 16 20 C 0.08 0.75 10.41 59.84 0.62 1.37 16 21 C 0.08 0.70 9.31 59.85 0.56 1.25 16 22 C -0.08 -1.11 1.16 -154.48 -0.18 -1.29 16 23 C 0.10 1.27 7.19 -3.40 -0.02 1.25 16 24 N -0.64 -7.75 3.42 -183.79 -0.63 -8.38 16 25 C 0.53 6.70 7.36 -10.99 -0.08 6.62 16 26 C -0.17 -1.48 10.14 36.00 0.37 -1.11 16 27 O -0.55 -9.00 17.83 5.55 0.10 -8.90 16 28 C 0.13 1.59 8.08 -3.40 -0.03 1.56 16 29 C 0.07 1.13 5.15 -2.57 -0.01 1.12 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 1.29 7.39 -51.93 -0.38 0.90 16 32 H 0.05 0.94 7.48 -51.93 -0.39 0.55 16 33 H 0.01 0.25 6.96 -51.93 -0.36 -0.11 16 34 H 0.09 2.35 6.11 -51.93 -0.32 2.04 16 35 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.08 1.28 7.69 -51.93 -0.40 0.89 16 37 H 0.05 1.05 7.00 -51.93 -0.36 0.69 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.41 7.92 -51.93 -0.41 0.00 16 40 H 0.08 0.75 7.42 -51.93 -0.39 0.37 16 41 H 0.06 0.66 6.98 -51.93 -0.36 0.29 16 42 H 0.07 0.51 7.79 -51.93 -0.40 0.10 16 43 H 0.06 0.53 7.55 -51.93 -0.39 0.14 16 44 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.09 1.12 5.58 -51.93 -0.29 0.83 16 46 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.09 0.74 8.14 -51.92 -0.42 0.31 16 48 H 0.08 0.61 7.84 -51.92 -0.41 0.20 16 49 H 0.08 1.05 7.87 -51.93 -0.41 0.64 16 50 H 0.09 1.12 7.96 -51.93 -0.41 0.71 16 51 H 0.05 0.96 7.91 -51.93 -0.41 0.55 16 52 H 0.09 1.48 7.24 -51.93 -0.38 1.11 16 LS Contribution 400.37 15.07 6.03 6.03 Total: -1.00 -31.04 400.37 -8.55 -39.59 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -8.81 Total: 1.03 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 0.68 Total: 5.95 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -1.60 Total: -50.22 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.18 Total: -17.99 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.04 -8.55 -39.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176709.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.422 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds