Wall clock time and date at job start Tue Mar 31 2020 20:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47138 * 2 1 4 4 H 1.09004 * 109.46905 * 178.64064 * 3 2 1 5 5 C 1.50698 * 109.46780 * 58.64097 * 3 2 1 6 6 H 1.08001 * 119.99522 * 239.99805 * 5 3 2 7 7 C 1.37875 * 120.00306 * 60.00001 * 5 3 2 8 8 N 1.31515 * 119.99715 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99807 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47168 * 60.00465 * 9 7 5 11 11 H 1.48507 * 109.46974 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47680 * 299.99830 * 9 7 5 13 13 N 1.46896 * 109.46935 * 298.63863 * 3 2 1 14 14 C 1.48973 * 111.14658 * 297.47088 * 13 3 2 15 15 C 1.54645 * 104.69158 * 201.52118 * 14 13 3 16 16 H 1.09006 * 110.40515 * 264.91986 * 15 14 13 17 17 C 1.50696 * 110.50538 * 142.54297 * 15 14 13 18 18 O 1.21279 * 120.00272 * 315.89165 * 17 15 14 19 19 N 1.34785 * 120.00108 * 135.89197 * 17 15 14 20 20 C 1.46493 * 120.00177 * 180.02562 * 19 17 15 21 21 C 1.46505 * 119.99593 * 359.97438 * 19 17 15 22 22 C 1.53268 * 104.62818 * 23.70558 * 15 14 13 23 23 C 1.52858 * 115.78138 * 129.60553 * 22 15 14 24 24 N 1.47798 * 85.76795 * 94.43932 * 23 22 15 25 25 C 1.34772 * 134.38998 * 203.83898 * 24 23 22 26 26 C 1.50698 * 120.00280 * 0.02562 * 25 24 23 27 27 O 1.21285 * 120.00068 * 180.02562 * 25 24 23 28 28 C 1.47788 * 91.21530 * 23.84513 * 24 23 22 29 29 C 1.48811 * 110.99518 * 181.93324 * 13 3 2 30 30 H 1.08995 * 109.47333 * 174.43416 * 1 2 3 31 31 H 1.09003 * 109.46848 * 294.43035 * 1 2 3 32 32 H 1.08999 * 109.46902 * 54.42869 * 1 2 3 33 33 H 1.08998 * 109.47205 * 240.00308 * 2 1 3 34 34 H 1.08995 * 109.47325 * 120.00169 * 2 1 3 35 35 H 0.97003 * 119.99455 * 180.02562 * 8 7 5 36 36 H 1.09003 * 110.37699 * 82.71311 * 14 13 3 37 37 H 1.09000 * 110.48364 * 320.38090 * 14 13 3 38 38 H 1.08993 * 109.47204 * 89.99590 * 20 19 17 39 39 H 1.09002 * 109.46969 * 210.00452 * 20 19 17 40 40 H 1.09001 * 109.46659 * 329.99583 * 20 19 17 41 41 H 1.09005 * 109.47026 * 60.00231 * 21 19 17 42 42 H 1.08999 * 109.46517 * 179.97438 * 21 19 17 43 43 H 1.09001 * 109.47179 * 300.00474 * 21 19 17 44 44 H 1.08997 * 113.82030 * 208.65538 * 23 22 15 45 45 H 1.08994 * 113.82119 * 340.22994 * 23 22 15 46 46 H 1.08995 * 109.47933 * 89.99196 * 26 25 24 47 47 H 1.09007 * 109.47322 * 209.99717 * 26 25 24 48 48 H 1.09008 * 109.46723 * 329.99368 * 26 25 24 49 49 H 1.08993 * 113.82816 * 221.94208 * 28 24 23 50 50 H 1.09005 * 113.93766 * 90.37150 * 28 24 23 51 51 H 1.08993 * 110.46922 * 39.45859 * 29 13 3 52 52 H 1.08997 * 110.46267 * 276.99724 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1298 1.4426 0.0244 5 6 1.5103 2.1626 1.2133 6 1 0.8919 3.0398 1.0933 7 6 1.8152 1.7015 2.4764 8 7 2.5688 0.6335 2.6223 9 14 1.1592 2.5944 3.9802 10 1 -0.3254 2.5948 3.9472 11 1 1.6273 1.9043 5.2090 12 1 1.6546 3.9943 3.9801 13 7 1.5774 2.1255 -1.2155 14 6 2.1302 1.4790 -2.4386 15 6 2.0419 2.5688 -3.5322 16 1 1.1248 2.4540 -4.1100 17 6 3.2442 2.5057 -4.4386 18 8 4.3529 2.3682 -3.9667 19 7 3.0873 2.6021 -5.7738 20 6 4.2559 2.5401 -6.6550 21 6 1.7479 2.7676 -6.3439 22 6 2.0243 3.8923 -2.7593 23 6 3.0262 4.9481 -3.2260 24 7 1.9185 5.4778 -4.0486 25 6 1.8493 6.2175 -5.1731 26 6 3.1139 6.6773 -5.8516 27 8 0.7693 6.5132 -5.6390 28 6 0.9170 4.8728 -3.1459 29 6 2.0938 3.5199 -1.2730 30 1 -0.3634 -1.0228 -0.0997 31 1 -0.3633 0.4250 0.9357 32 1 -0.3633 0.5978 -0.8359 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.7830 0.3089 3.5110 36 1 1.5285 0.6133 -2.7153 37 1 3.1674 1.1844 -2.2786 38 1 4.4451 1.5040 -6.9353 39 1 4.0666 3.1305 -7.5516 40 1 5.1256 2.9401 -6.1337 41 1 1.3000 3.6839 -5.9593 42 1 1.8201 2.8269 -7.4299 43 1 1.1271 1.9156 -6.0665 44 1 3.3516 5.6257 -2.4366 45 1 3.8531 4.5430 -3.8093 46 1 3.4278 5.9299 -6.5802 47 1 2.9305 7.6245 -6.3588 48 1 3.8984 6.8101 -5.1065 49 1 0.0792 4.4082 -3.6658 50 1 0.6036 5.5262 -2.3316 51 1 3.1234 3.5600 -0.9179 52 1 1.4622 4.1847 -0.6838 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255176709.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:16 Heat of formation + Delta-G solvation = -34.891540 kcal Electronic energy + Delta-G solvation = -32256.424086 eV Core-core repulsion = 28256.978957 eV Total energy + Delta-G solvation = -3999.445129 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.61068 -40.44783 -39.50997 -38.23625 -36.59718 -35.53608 -33.34355 -31.90482 -31.53969 -29.73174 -29.02350 -28.14493 -27.34833 -26.92371 -26.29880 -24.70469 -23.33414 -21.31880 -20.72565 -20.23075 -19.19153 -18.41554 -18.03925 -17.96220 -17.29181 -17.05851 -16.81959 -16.55904 -16.28046 -16.15540 -15.52960 -15.05700 -14.90712 -14.87022 -14.34261 -14.25815 -14.13692 -13.84565 -13.66033 -13.58457 -13.49720 -13.46979 -13.41155 -13.07131 -12.95780 -12.84873 -12.79441 -12.73972 -12.45571 -12.41058 -12.32382 -12.07814 -11.90258 -11.61009 -11.52844 -11.29247 -10.84491 -10.79944 -10.73683 -10.43534 -9.78878 -9.71452 -9.09485 -8.03754 -6.13485 1.45023 1.46564 1.47406 1.54098 1.57023 1.79148 1.96621 2.46883 3.02067 3.25549 3.30707 3.47891 3.63332 3.67006 3.71568 4.00319 4.20756 4.24723 4.29867 4.37081 4.43703 4.46076 4.47742 4.53105 4.55213 4.60421 4.61859 4.70955 4.73357 4.77622 4.81451 4.84474 4.85874 4.87801 4.91295 4.93414 4.98590 5.04331 5.14383 5.30097 5.43382 5.49415 5.50051 5.72093 5.79310 5.88185 6.21508 6.25553 6.37223 6.60590 6.65473 6.97847 7.08591 7.09289 7.54121 9.02098 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015038 B = 0.003778 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.541788 B = 7409.958125 C = 8309.631940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.105 4.105 3 C 0.217 3.783 4 H -0.045 1.045 5 C -0.500 4.500 6 H 0.061 0.939 7 C 0.015 3.985 8 N -0.921 5.921 9 Si 0.951 3.049 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.272 1.272 13 N -0.493 5.493 14 C 0.050 3.950 15 C -0.081 4.081 16 H 0.118 0.882 17 C 0.527 3.473 18 O -0.573 6.573 19 N -0.614 5.614 20 C 0.081 3.919 21 C 0.076 3.924 22 C -0.077 4.077 23 C 0.114 3.886 24 N -0.636 5.636 25 C 0.531 3.469 26 C -0.162 4.162 27 O -0.592 6.592 28 C 0.129 3.871 29 C 0.067 3.933 30 H 0.035 0.965 31 H 0.033 0.967 32 H 0.058 0.942 33 H 0.022 0.978 34 H 0.058 0.942 35 H 0.258 0.742 36 H 0.084 0.916 37 H 0.023 0.977 38 H 0.057 0.943 39 H 0.100 0.900 40 H 0.061 0.939 41 H 0.052 0.948 42 H 0.104 0.896 43 H 0.071 0.929 44 H 0.105 0.895 45 H 0.084 0.916 46 H 0.105 0.895 47 H 0.101 0.899 48 H 0.088 0.912 49 H 0.090 0.910 50 H 0.101 0.899 51 H 0.026 0.974 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.393 7.341 -19.890 21.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.144 4.144 3 C 0.109 3.891 4 H -0.027 1.027 5 C -0.538 4.538 6 H 0.079 0.921 7 C -0.183 4.183 8 N -0.561 5.561 9 Si 0.777 3.223 10 H -0.196 1.196 11 H -0.217 1.217 12 H -0.198 1.198 13 N -0.217 5.217 14 C -0.079 4.079 15 C -0.103 4.103 16 H 0.136 0.864 17 C 0.316 3.684 18 O -0.453 6.453 19 N -0.347 5.347 20 C -0.061 4.061 21 C -0.067 4.067 22 C -0.079 4.079 23 C -0.008 4.008 24 N -0.371 5.371 25 C 0.323 3.677 26 C -0.221 4.221 27 O -0.473 6.473 28 C 0.007 3.993 29 C -0.061 4.061 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.103 0.897 37 H 0.041 0.959 38 H 0.076 0.924 39 H 0.119 0.881 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.122 0.878 43 H 0.090 0.910 44 H 0.123 0.877 45 H 0.103 0.897 46 H 0.124 0.876 47 H 0.119 0.881 48 H 0.107 0.893 49 H 0.108 0.892 50 H 0.119 0.881 51 H 0.044 0.956 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.101 7.411 -19.951 21.284 hybrid contribution 0.985 -0.019 1.415 1.724 sum 0.884 7.392 -18.536 19.975 Atomic orbital electron populations 1.21303 0.95354 0.98644 1.01058 1.21394 0.96754 0.97350 0.98896 1.19201 0.90456 0.92107 0.87323 1.02725 1.21178 1.30599 1.11759 0.90271 0.92065 1.25599 0.95522 0.95726 1.01500 1.70027 1.38581 1.24481 1.23038 0.85722 0.78922 0.78729 0.78922 1.19588 1.21706 1.19765 1.65621 1.53058 1.01571 1.01451 1.23039 0.97794 0.96642 0.90422 1.21739 0.97885 0.95165 0.95492 0.86400 1.20434 0.90001 0.74893 0.83076 1.90704 1.27875 1.50798 1.75875 1.47850 1.09597 1.71847 1.05385 1.21819 0.87669 1.02523 0.94055 1.22000 0.82082 1.01702 1.00879 1.22175 0.97757 0.92957 0.95048 1.23359 0.91245 0.92995 0.93235 1.50255 1.10614 1.52347 1.23908 1.21029 0.91996 0.75390 0.79238 1.21854 0.94059 1.04226 1.01988 1.90705 1.32628 1.58128 1.65864 1.23164 0.92736 0.91651 0.91707 1.22629 0.98123 0.92183 0.93211 0.94567 0.94814 0.92316 0.95923 0.92325 0.93268 0.89746 0.95913 0.92388 0.88130 0.91999 0.92914 0.87753 0.91022 0.87657 0.89744 0.87633 0.88060 0.89339 0.89168 0.88121 0.95607 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.47 9.46 71.98 0.68 -3.79 16 2 C -0.11 -5.00 5.29 30.60 0.16 -4.84 16 3 C 0.22 10.62 1.53 44.17 0.07 10.69 16 4 H -0.04 -2.57 7.99 -2.38 -0.02 -2.59 16 5 C -0.50 -26.00 6.90 25.60 0.18 -25.82 16 6 H 0.06 3.12 7.10 -2.91 -0.02 3.10 16 7 C 0.02 0.81 5.30 84.65 0.45 1.25 16 8 N -0.92 -52.55 11.33 21.45 0.24 -52.31 16 9 Si 0.95 42.78 29.54 68.60 2.03 44.80 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 N -0.49 -19.46 4.40 -860.36 -3.78 -23.25 16 14 C 0.05 1.74 4.99 86.46 0.43 2.18 16 15 C -0.08 -2.18 2.82 -10.89 -0.03 -2.22 16 16 H 0.12 2.67 5.77 -2.38 -0.01 2.66 16 17 C 0.53 14.16 4.80 87.65 0.42 14.58 16 18 O -0.57 -19.94 14.79 -3.03 -0.04 -19.98 16 19 N -0.61 -11.80 3.27 -871.89 -2.85 -14.65 16 20 C 0.08 1.21 10.41 127.77 1.33 2.54 16 21 C 0.08 1.08 9.31 127.77 1.19 2.27 16 22 C -0.08 -2.05 1.16 -52.00 -0.06 -2.11 16 23 C 0.11 2.63 7.19 86.08 0.62 3.25 16 24 N -0.64 -14.05 3.42 -853.77 -2.92 -16.97 16 25 C 0.53 12.09 7.36 87.66 0.64 12.74 16 26 C -0.16 -2.35 10.14 71.24 0.72 -1.63 16 27 O -0.59 -18.07 17.83 -3.05 -0.05 -18.13 16 28 C 0.13 2.99 8.08 86.09 0.70 3.69 16 29 C 0.07 2.36 5.15 86.06 0.44 2.80 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.32 16 31 H 0.03 1.54 7.39 -2.39 -0.02 1.52 16 32 H 0.06 2.30 7.48 -2.39 -0.02 2.28 16 33 H 0.02 0.99 6.96 -2.39 -0.02 0.97 16 34 H 0.06 3.17 6.11 -2.39 -0.01 3.16 16 35 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 36 H 0.08 2.78 7.69 -2.39 -0.02 2.77 16 37 H 0.02 0.94 7.00 -2.39 -0.02 0.92 16 38 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.10 0.83 7.92 -2.39 -0.02 0.81 16 40 H 0.06 1.13 7.42 -2.39 -0.02 1.12 16 41 H 0.05 0.91 6.98 -2.38 -0.02 0.90 16 42 H 0.10 0.93 7.79 -2.39 -0.02 0.91 16 43 H 0.07 0.95 7.55 -2.39 -0.02 0.93 16 44 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.08 2.07 5.58 -2.39 -0.01 2.06 16 46 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.10 1.31 8.14 -2.38 -0.02 1.30 16 48 H 0.09 1.11 7.84 -2.38 -0.02 1.09 16 49 H 0.09 2.02 7.87 -2.39 -0.02 2.00 16 50 H 0.10 2.22 7.96 -2.38 -0.02 2.20 16 51 H 0.03 1.02 7.91 -2.39 -0.02 1.01 16 52 H 0.09 2.97 7.24 -2.39 -0.02 2.96 16 Total: -1.00 -70.08 400.37 1.45 -68.63 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.90 Total: 16.28 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: 7.94 Total: 15.58 kcal Atomic # 7 Polarization: -97.86 SS G_CDS: -9.32 Total: -107.18 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -0.10 Total: -38.11 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -70.08 1.45 -68.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176709.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.738 kcal (2) G-P(sol) polarization free energy of solvation -70.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds