Wall clock time and date at job start Tue Mar 31 2020 20:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46980 * 2 1 4 4 H 1.08995 * 109.87138 * 302.70693 * 3 2 1 5 5 C 1.54323 * 109.87724 * 63.72153 * 3 2 1 6 6 H 1.08991 * 110.87766 * 23.33025 * 5 3 2 7 7 C 1.53006 * 110.71812 * 260.12106 * 5 3 2 8 8 C 1.55161 * 102.93901 * 141.76622 * 5 3 2 9 9 C 1.54910 * 101.58043 * 324.49420 * 8 5 3 10 10 N 1.47020 * 110.00889 * 181.60208 * 3 2 1 11 11 C 1.34776 * 125.64626 * 61.59883 * 10 3 2 12 12 O 1.21353 * 119.99890 * 4.87464 * 11 10 3 13 13 C 1.49446 * 120.00167 * 184.88301 * 11 10 3 14 14 O 1.21354 * 119.99869 * 6.66692 * 13 11 10 15 15 N 1.34771 * 120.00475 * 186.66367 * 13 11 10 16 16 C 1.47084 * 120.87847 * 358.20438 * 15 13 11 17 17 C 1.53701 * 108.27830 * 128.75396 * 16 15 13 18 18 N 1.46901 * 109.25500 * 54.08249 * 17 16 15 19 19 C 1.46901 * 110.99881 * 172.61250 * 18 17 16 20 20 C 1.50696 * 109.47513 * 59.34333 * 19 18 17 21 21 H 1.07999 * 119.99828 * 5.04558 * 20 19 18 22 22 C 1.37876 * 120.00330 * 185.05603 * 20 19 18 23 23 N 1.31513 * 119.99633 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00261 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47063 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47312 * 119.99420 * 24 22 20 27 27 H 1.48496 * 109.47005 * 239.99630 * 24 22 20 28 28 C 1.46904 * 111.26751 * 296.75832 * 18 17 16 29 29 C 1.47079 * 120.88527 * 178.48337 * 15 13 11 30 30 H 1.09004 * 109.46943 * 183.66258 * 1 2 3 31 31 H 1.08999 * 109.47523 * 303.66441 * 1 2 3 32 32 H 1.09005 * 109.47169 * 63.66283 * 1 2 3 33 33 H 1.09005 * 109.46745 * 240.00044 * 2 1 3 34 34 H 1.09001 * 109.46983 * 120.00377 * 2 1 3 35 35 H 1.08997 * 109.47450 * 305.02893 * 7 5 3 36 36 H 1.09005 * 109.46905 * 65.03381 * 7 5 3 37 37 H 1.09007 * 109.46722 * 185.02605 * 7 5 3 38 38 H 1.08999 * 111.00484 * 82.57065 * 8 5 3 39 39 H 1.09006 * 111.00349 * 206.41910 * 8 5 3 40 40 H 1.08999 * 110.36790 * 155.85146 * 9 8 5 41 41 H 1.09002 * 110.36381 * 278.16998 * 9 8 5 42 42 H 1.09002 * 109.63063 * 248.52214 * 16 15 13 43 43 H 1.08996 * 109.62855 * 9.09999 * 16 15 13 44 44 H 1.08998 * 109.64504 * 294.08549 * 17 16 15 45 45 H 1.08994 * 109.42083 * 173.94536 * 17 16 15 46 46 H 1.09006 * 109.46769 * 179.34397 * 19 18 17 47 47 H 1.09000 * 109.46663 * 299.34222 * 19 18 17 48 48 H 0.97001 * 120.00207 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.49501 * 303.14263 * 28 18 17 50 50 H 1.09002 * 109.48850 * 183.06588 * 28 18 17 51 51 H 1.08997 * 109.62976 * 350.89507 * 29 15 13 52 52 H 1.08994 * 109.63125 * 111.28294 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6413 1.9764 -0.8625 5 6 1.6091 2.1514 1.3013 6 1 1.4158 1.4271 2.0925 7 6 0.3779 3.0268 1.0587 8 6 2.8442 3.0249 1.6465 9 6 4.0084 2.1143 1.1827 10 7 3.5096 1.4565 -0.0386 11 6 4.2742 0.9521 -1.0273 12 8 3.7545 0.5106 -2.0311 13 6 5.7620 0.9363 -0.8873 14 8 6.2763 1.2642 0.1618 15 7 6.5327 0.5578 -1.9261 16 6 5.9289 0.1191 -3.1935 17 6 6.5800 0.9123 -4.3377 18 7 8.0395 0.7633 -4.2612 19 6 8.6917 1.3593 -5.4348 20 6 8.3458 2.8240 -5.5121 21 1 7.7733 3.2861 -4.7214 22 6 8.7598 3.5742 -6.5923 23 7 9.4571 3.0115 -7.5550 24 14 8.3304 5.3895 -6.6884 25 1 7.5447 5.7765 -5.4892 26 1 9.5790 6.1914 -6.7425 27 1 7.5255 5.6437 -7.9102 28 6 8.5691 1.3367 -3.0167 29 6 7.9997 0.5666 -1.8205 30 1 -0.3633 -1.0256 0.0657 31 1 -0.3634 0.5696 0.8553 32 1 -0.3634 0.4559 -0.9210 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.5816 3.7229 0.2451 36 1 -0.4701 2.3955 0.7930 37 1 0.1450 3.5854 1.9653 38 1 2.8312 3.9590 1.0850 39 1 2.9004 3.2158 2.7182 40 1 4.8914 2.7125 0.9579 41 1 4.2369 1.3717 1.9473 42 1 6.1078 -0.9469 -3.3348 43 1 4.8567 0.3138 -3.1750 44 1 6.3169 1.9663 -4.2490 45 1 6.2248 0.5274 -5.2935 46 1 9.7722 1.2453 -5.3470 47 1 8.3454 0.8561 -6.3375 48 1 9.7488 3.5393 -8.3148 49 1 8.2783 2.3848 -2.9464 50 1 9.6564 1.2596 -3.0147 51 1 8.2971 1.0575 -0.8939 52 1 8.3736 -0.4571 -1.8288 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261865712.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:56 Heat of formation + Delta-G solvation = -64.092219 kcal Electronic energy + Delta-G solvation = -30990.628135 eV Core-core repulsion = 26989.916770 eV Total energy + Delta-G solvation = -4000.711365 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.24909 -40.66175 -39.10108 -39.02443 -36.16465 -34.74509 -34.31832 -33.55997 -32.14647 -30.16787 -29.83155 -28.26327 -27.28096 -25.54003 -24.69465 -24.02538 -23.46597 -22.88794 -21.68472 -20.86871 -20.18373 -18.66167 -18.29755 -18.03111 -17.61115 -16.99534 -16.71504 -16.57317 -16.07061 -15.86315 -15.73463 -15.49572 -15.20907 -15.07048 -14.79888 -14.61413 -14.40370 -14.04616 -13.85817 -13.64564 -13.58074 -13.40158 -13.08543 -13.02308 -12.91624 -12.78937 -12.72917 -12.57586 -12.51560 -12.43592 -12.18761 -12.01478 -12.00588 -11.83232 -11.73598 -11.64487 -11.47742 -11.19956 -10.65670 -10.16790 -10.02123 -9.79004 -9.10866 -8.20674 -6.39879 0.24638 1.12257 1.31376 1.33017 1.44144 2.01380 2.24404 2.32822 2.99226 3.04433 3.28921 3.51030 3.55834 3.78988 3.94985 4.04954 4.07512 4.18189 4.26733 4.29125 4.30994 4.41310 4.47581 4.49386 4.56545 4.57863 4.72799 4.74009 4.79456 4.87159 4.89217 4.92778 4.98754 5.02896 5.08902 5.09614 5.14232 5.15662 5.17971 5.24037 5.27451 5.28058 5.37874 5.44197 5.52087 5.68783 5.91386 6.00530 6.12893 6.21728 6.40045 6.52896 6.79553 6.83250 7.31560 8.82230 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014421 B = 0.002892 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.189545 B = 9679.927428 C =10215.097114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.131 4.131 3 C 0.131 3.869 4 H 0.071 0.929 5 C -0.089 4.089 6 H 0.104 0.896 7 C -0.144 4.144 8 C -0.125 4.125 9 C 0.097 3.903 10 N -0.583 5.583 11 C 0.520 3.480 12 O -0.525 6.525 13 C 0.503 3.497 14 O -0.539 6.539 15 N -0.576 5.576 16 C 0.072 3.928 17 C 0.058 3.942 18 N -0.538 5.538 19 C 0.200 3.800 20 C -0.558 4.558 21 H 0.048 0.952 22 C 0.015 3.985 23 N -0.922 5.922 24 Si 0.955 3.045 25 H -0.274 1.274 26 H -0.275 1.275 27 H -0.275 1.275 28 C 0.054 3.946 29 C 0.122 3.878 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.112 0.888 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.152 0.848 44 H 0.015 0.985 45 H 0.075 0.925 46 H 0.010 0.990 47 H 0.012 0.988 48 H 0.266 0.734 49 H 0.015 0.985 50 H 0.084 0.916 51 H 0.098 0.902 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.790 -3.283 21.875 29.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.170 4.170 3 C 0.029 3.971 4 H 0.089 0.911 5 C -0.108 4.108 6 H 0.122 0.878 7 C -0.201 4.201 8 C -0.163 4.163 9 C -0.024 4.024 10 N -0.315 5.315 11 C 0.304 3.696 12 O -0.405 6.405 13 C 0.286 3.714 14 O -0.418 6.418 15 N -0.309 5.309 16 C -0.050 4.050 17 C -0.072 4.072 18 N -0.262 5.262 19 C 0.074 3.926 20 C -0.597 4.597 21 H 0.067 0.933 22 C -0.185 4.185 23 N -0.562 5.562 24 Si 0.780 3.220 25 H -0.198 1.198 26 H -0.200 1.200 27 H -0.201 1.201 28 C -0.075 4.075 29 C 0.000 4.000 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.131 0.869 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.168 0.832 44 H 0.033 0.967 45 H 0.093 0.907 46 H 0.028 0.972 47 H 0.030 0.970 48 H 0.075 0.925 49 H 0.034 0.966 50 H 0.103 0.897 51 H 0.116 0.884 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.536 -3.845 21.681 28.783 hybrid contribution 0.479 1.735 -1.037 2.077 sum -18.058 -2.109 20.644 27.508 Atomic orbital electron populations 1.21785 0.93018 1.02688 1.02766 1.21828 0.98015 0.95115 1.01994 1.22119 0.77192 0.97629 1.00110 0.91073 1.22310 0.95733 0.97734 0.95005 0.87760 1.21887 0.96259 0.99339 1.02635 1.22986 0.92257 0.97467 1.03616 1.22683 0.98306 0.96197 0.85231 1.48521 1.07971 1.55022 1.20001 1.19806 0.87546 0.79330 0.82956 1.90334 1.73923 1.48233 1.28010 1.20101 0.88161 0.78985 0.84181 1.90682 1.74967 1.48603 1.27543 1.48184 1.07458 1.61749 1.13467 1.23418 1.02659 0.99003 0.79871 1.22301 0.88578 0.97562 0.98711 1.62474 1.04578 1.56326 1.02834 1.19445 0.93454 0.91654 0.88070 1.21946 1.34969 0.96810 1.05969 0.93340 1.25758 0.94702 1.02835 0.95177 1.70050 1.37873 1.37888 1.10367 0.85559 0.78221 0.80182 0.78035 1.19835 1.19996 1.20092 1.22251 1.00034 0.95594 0.89661 1.21911 0.77534 1.02160 0.98389 0.91939 0.90248 0.92802 0.93303 0.91396 0.93134 0.91017 0.90394 0.90684 0.86939 0.90769 0.90020 0.89990 0.83171 0.96688 0.90688 0.97201 0.96998 0.92453 0.96618 0.89727 0.88361 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.28 71.98 0.67 -1.04 16 2 C -0.13 -2.24 5.38 30.60 0.16 -2.07 16 3 C 0.13 2.34 2.52 45.34 0.11 2.46 16 4 H 0.07 1.45 7.79 -2.39 -0.02 1.43 16 5 C -0.09 -0.96 2.35 -9.60 -0.02 -0.98 16 6 H 0.10 0.85 7.77 -2.39 -0.02 0.83 16 7 C -0.14 -1.17 8.92 71.98 0.64 -0.53 16 8 C -0.13 -1.48 6.53 31.99 0.21 -1.27 16 9 C 0.10 1.85 5.80 86.86 0.50 2.35 16 10 N -0.58 -13.60 3.07 -789.64 -2.42 -16.02 16 11 C 0.52 15.43 7.58 87.27 0.66 16.09 16 12 O -0.53 -17.02 12.23 -3.26 -0.04 -17.06 16 13 C 0.50 16.21 7.70 87.27 0.67 16.89 16 14 O -0.54 -17.85 13.52 -3.26 -0.04 -17.90 16 15 N -0.58 -19.22 3.00 -818.63 -2.46 -21.68 16 16 C 0.07 2.42 6.39 86.50 0.55 2.97 16 17 C 0.06 2.36 5.17 86.54 0.45 2.81 16 18 N -0.54 -23.56 4.83 -898.86 -4.34 -27.90 16 19 C 0.20 10.62 5.11 85.56 0.44 11.06 16 20 C -0.56 -31.50 7.75 25.60 0.20 -31.30 16 21 H 0.05 2.77 5.88 -2.91 -0.02 2.75 16 22 C 0.02 0.86 5.46 84.65 0.46 1.32 16 23 N -0.92 -55.02 13.29 21.45 0.28 -54.73 16 24 Si 0.95 44.70 29.54 68.60 2.03 46.73 16 25 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 26 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 27 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 28 C 0.05 2.11 5.24 86.38 0.45 2.56 16 29 C 0.12 3.92 6.59 86.35 0.57 4.49 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.08 0.64 5.58 -2.39 -0.01 0.62 16 32 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.05 1.12 6.97 -2.38 -0.02 1.10 16 34 H 0.07 1.09 8.10 -2.39 -0.02 1.07 16 35 H 0.05 0.52 8.09 -2.39 -0.02 0.50 16 36 H 0.07 0.49 6.01 -2.38 -0.01 0.48 16 37 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 38 H 0.07 0.96 8.05 -2.39 -0.02 0.95 16 39 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.07 1.72 6.67 -2.39 -0.02 1.70 16 41 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.08 2.57 8.14 -2.39 -0.02 2.56 16 43 H 0.15 5.13 3.91 -75.57 -0.30 4.83 16 44 H 0.01 0.69 6.79 -2.39 -0.02 0.67 16 45 H 0.07 3.09 8.11 -2.39 -0.02 3.07 16 46 H 0.01 0.55 8.07 -2.38 -0.02 0.54 16 47 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 49 H 0.02 0.69 6.92 -2.39 -0.02 0.67 16 50 H 0.08 3.21 8.05 -2.39 -0.02 3.19 16 51 H 0.10 2.99 7.07 -2.39 -0.02 2.98 16 52 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -67.30 391.86 0.36 -66.94 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.62 Total: 15.82 kcal Atomic # 6 Polarization: 19.07 SS G_CDS: 6.73 Total: 25.81 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -8.94 Total: -120.33 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -0.08 Total: -34.96 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -67.30 0.36 -66.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261865712.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.847 kcal (2) G-P(sol) polarization free energy of solvation -67.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds