Wall clock time and date at job start Tue Mar 31 2020 20:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47227 * 2 1 4 4 H 1.09000 * 109.87090 * 55.62447 * 3 2 1 5 5 C 1.54318 * 109.88524 * 294.44812 * 3 2 1 6 6 H 1.08996 * 110.72198 * 336.75347 * 5 3 2 7 7 C 1.53002 * 110.71831 * 100.02667 * 5 3 2 8 8 C 1.55153 * 102.94483 * 218.39025 * 5 3 2 9 9 C 1.54915 * 101.57965 * 35.50131 * 8 5 3 10 10 N 1.47020 * 109.88200 * 176.63810 * 3 2 1 11 11 C 1.34777 * 125.64814 * 298.32875 * 10 3 2 12 12 O 1.21349 * 120.00208 * 4.96258 * 11 10 3 13 13 C 1.49455 * 119.99764 * 184.96547 * 11 10 3 14 14 O 1.21346 * 120.00340 * 353.29241 * 13 11 10 15 15 N 1.34778 * 119.99719 * 173.29776 * 13 11 10 16 16 C 1.47080 * 120.87729 * 180.94536 * 15 13 11 17 17 C 1.53702 * 108.27443 * 128.75707 * 16 15 13 18 18 N 1.46894 * 109.26036 * 54.07902 * 17 16 15 19 19 C 1.46896 * 111.00399 * 172.60707 * 18 17 16 20 20 C 1.50695 * 109.47152 * 294.30675 * 19 18 17 21 21 H 1.07997 * 120.00284 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99921 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00216 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00056 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47008 * 60.00328 * 24 22 20 26 26 H 1.48502 * 109.47211 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47534 * 300.00203 * 24 22 20 28 28 C 1.46906 * 111.27183 * 296.76304 * 18 17 16 29 29 C 1.47078 * 120.88265 * 1.22196 * 15 13 11 30 30 H 1.09006 * 109.46871 * 296.20060 * 1 2 3 31 31 H 1.08999 * 109.46895 * 56.19250 * 1 2 3 32 32 H 1.09002 * 109.47499 * 176.19782 * 1 2 3 33 33 H 1.09000 * 109.46935 * 120.00409 * 2 1 3 34 34 H 1.09001 * 109.46361 * 240.00043 * 2 1 3 35 35 H 1.08993 * 109.47519 * 60.00002 * 7 5 3 36 36 H 1.09006 * 109.46893 * 179.97438 * 7 5 3 37 37 H 1.08999 * 109.47169 * 299.99628 * 7 5 3 38 38 H 1.09007 * 111.00638 * 277.43087 * 8 5 3 39 39 H 1.08997 * 111.04177 * 153.59261 * 8 5 3 40 40 H 1.09003 * 110.36756 * 204.15289 * 9 8 5 41 41 H 1.08991 * 110.45900 * 81.87700 * 9 8 5 42 42 H 1.08998 * 109.62917 * 248.51787 * 16 15 13 43 43 H 1.08991 * 109.63179 * 9.10567 * 16 15 13 44 44 H 1.09003 * 109.64331 * 294.07819 * 17 16 15 45 45 H 1.08994 * 109.44206 * 173.95983 * 17 16 15 46 46 H 1.09002 * 109.46985 * 54.30644 * 19 18 17 47 47 H 1.08997 * 109.47452 * 174.29844 * 19 18 17 48 48 H 0.96999 * 120.00389 * 179.97438 * 23 22 20 49 49 H 1.09009 * 109.48863 * 303.13939 * 28 18 17 50 50 H 1.08997 * 109.51548 * 183.07643 * 28 18 17 51 51 H 1.08999 * 109.63272 * 350.90338 * 29 15 13 52 52 H 1.09006 * 109.62829 * 111.47972 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6179 1.9847 0.8461 5 6 1.6488 2.1375 -1.3210 6 1 1.4784 1.4026 -2.1078 7 6 0.4132 3.0182 -1.1240 8 6 2.8954 3.0043 -1.6402 9 6 4.0436 2.0965 -1.1328 10 7 3.5080 1.4538 0.0811 11 6 4.2424 0.9591 1.0972 12 8 3.6987 0.3700 2.0082 13 6 5.7264 1.1361 1.1019 14 8 6.2833 1.6158 0.1364 15 7 6.4461 0.7628 2.1785 16 6 7.9049 0.9472 2.2122 17 6 8.2683 1.6787 3.5142 18 7 7.7094 0.9425 4.6558 19 6 8.1790 1.5078 5.9278 20 6 9.6664 1.2999 6.0511 21 1 10.2087 0.7977 5.2637 22 6 10.3351 1.7509 7.1694 23 7 9.6749 2.3630 8.1281 24 14 12.1788 1.4926 7.3227 25 1 12.8689 2.1690 6.1950 26 1 12.6537 2.0653 8.6079 27 1 12.4797 0.0389 7.2868 28 6 6.2416 0.9119 4.6032 29 6 5.7944 0.1547 3.3484 30 1 -0.3633 0.4538 0.9221 31 1 -0.3633 0.5718 -0.8539 32 1 -0.3634 -1.0254 -0.0681 33 1 1.8933 -0.5139 0.8900 34 1 1.8932 -0.5139 -0.8900 35 1 0.6261 3.7806 -0.3748 36 1 0.1554 3.4988 -2.0678 37 1 -0.4219 2.4029 -0.7892 38 1 2.8688 3.9448 -1.0899 39 1 2.9836 3.1835 -2.7118 40 1 4.9212 2.6952 -0.8892 41 1 4.2939 1.3446 -1.8811 42 1 8.3976 -0.0247 2.1850 43 1 8.2185 1.5439 1.3557 44 1 7.8561 2.6876 3.4950 45 1 9.3528 1.7306 3.6106 46 1 7.9577 2.5748 5.9548 47 1 7.6727 1.0108 6.7552 48 1 10.1453 2.6800 8.9150 49 1 5.8576 1.9316 4.5689 50 1 5.8559 0.4077 5.4893 51 1 4.7119 0.2271 3.2434 52 1 6.0881 -0.8920 3.4283 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261865713.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:59 Heat of formation + Delta-G solvation = -62.124388 kcal Electronic energy + Delta-G solvation = -30628.288163 eV Core-core repulsion = 26627.662129 eV Total energy + Delta-G solvation = -4000.626034 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.27092 -40.66308 -39.06864 -39.04029 -36.12448 -34.74281 -34.36915 -33.55588 -32.20720 -30.29012 -29.85137 -28.27350 -27.33369 -25.61310 -24.62749 -23.84156 -23.46435 -22.92180 -21.73854 -20.90472 -20.16152 -18.58510 -18.31967 -18.11920 -17.61386 -16.99559 -16.63115 -16.54191 -16.11506 -15.85342 -15.71142 -15.47920 -15.35860 -15.15182 -14.79557 -14.57905 -14.35976 -14.14462 -13.99674 -13.66770 -13.64581 -13.39291 -13.15335 -12.93666 -12.81699 -12.78958 -12.73812 -12.57938 -12.52170 -12.37287 -12.26152 -12.13527 -12.00530 -11.81702 -11.69221 -11.48030 -11.33893 -11.17949 -10.63309 -10.13192 -10.04439 -9.79825 -9.11619 -8.21739 -6.32445 0.23523 1.09848 1.41683 1.44929 1.52706 1.99909 2.22537 2.40050 2.97447 3.10114 3.21260 3.51838 3.56969 3.79016 3.89623 3.98622 4.09135 4.16889 4.18591 4.26807 4.30014 4.36933 4.42223 4.47933 4.51217 4.57849 4.72378 4.74538 4.78706 4.86560 4.87458 4.89955 4.90835 4.97464 5.03616 5.08750 5.09975 5.14785 5.17973 5.19251 5.25757 5.28176 5.37824 5.45008 5.52783 5.61522 5.93910 6.00359 6.15208 6.23928 6.50782 6.53363 6.81174 6.82896 7.37356 8.89395 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025033 B = 0.002320 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.261755 B =12068.035475 C =12483.529776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.132 3.868 4 H 0.073 0.927 5 C -0.090 4.090 6 H 0.102 0.898 7 C -0.144 4.144 8 C -0.125 4.125 9 C 0.089 3.911 10 N -0.582 5.582 11 C 0.521 3.479 12 O -0.525 6.525 13 C 0.504 3.496 14 O -0.538 6.538 15 N -0.578 5.578 16 C 0.123 3.877 17 C 0.056 3.944 18 N -0.541 5.541 19 C 0.209 3.791 20 C -0.525 4.525 21 H 0.068 0.932 22 C 0.001 3.999 23 N -0.935 5.935 24 Si 0.972 3.028 25 H -0.266 1.266 26 H -0.285 1.285 27 H -0.267 1.267 28 C 0.043 3.957 29 C 0.074 3.926 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.111 0.889 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.012 0.988 45 H 0.087 0.913 46 H -0.041 1.041 47 H 0.007 0.993 48 H 0.265 0.735 49 H 0.014 0.986 50 H 0.084 0.916 51 H 0.157 0.843 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.630 -1.030 -23.599 30.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C 0.030 3.970 4 H 0.091 0.909 5 C -0.109 4.109 6 H 0.120 0.880 7 C -0.201 4.201 8 C -0.162 4.162 9 C -0.033 4.033 10 N -0.314 5.314 11 C 0.305 3.695 12 O -0.404 6.404 13 C 0.287 3.713 14 O -0.417 6.417 15 N -0.310 5.310 16 C 0.001 3.999 17 C -0.073 4.073 18 N -0.265 5.265 19 C 0.083 3.917 20 C -0.563 4.563 21 H 0.086 0.914 22 C -0.197 4.197 23 N -0.576 5.576 24 Si 0.796 3.204 25 H -0.191 1.191 26 H -0.210 1.210 27 H -0.192 1.192 28 C -0.086 4.086 29 C -0.047 4.047 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.129 0.871 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.119 0.881 44 H 0.030 0.970 45 H 0.106 0.894 46 H -0.024 1.024 47 H 0.025 0.975 48 H 0.073 0.927 49 H 0.033 0.967 50 H 0.102 0.898 51 H 0.173 0.827 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.385 -1.506 -23.434 30.450 hybrid contribution 1.011 0.844 1.164 1.758 sum -18.373 -0.662 -22.270 28.878 Atomic orbital electron populations 1.21785 0.93222 1.02610 1.02693 1.21858 0.97847 0.95242 1.02197 1.22128 0.77283 0.97594 0.99965 0.90912 1.22316 0.95860 0.97872 0.94823 0.87954 1.21879 0.96177 0.99178 1.02891 1.22970 0.92294 0.97532 1.03439 1.22830 0.98557 0.96748 0.85122 1.48526 1.08220 1.55696 1.18966 1.19741 0.87447 0.80067 0.82257 1.90328 1.72498 1.42473 1.35117 1.20146 0.88304 0.79536 0.83315 1.90663 1.72351 1.44751 1.33935 1.48209 1.08511 1.58023 1.16244 1.21983 0.78437 1.02031 0.97469 1.22373 1.01174 0.93648 0.90081 1.62056 1.07098 1.54105 1.03287 1.19375 0.95590 0.90585 0.86181 1.21421 0.93200 1.37075 1.04569 0.91433 1.25948 1.03844 0.94701 0.95231 1.70085 1.38176 1.40123 1.09181 0.85402 0.78747 0.78831 0.77432 1.19102 1.21020 1.19198 1.22486 0.88616 0.98294 0.99210 1.23270 1.03067 0.96723 0.81607 0.92811 0.90349 0.92066 0.92889 0.91542 0.92941 0.90421 0.91163 0.90568 0.87088 0.89702 0.90150 0.89305 0.88070 0.96964 0.89442 1.02365 0.97455 0.92661 0.96732 0.89767 0.82723 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.30 71.98 0.67 -0.97 16 2 C -0.13 -2.16 5.38 30.59 0.16 -2.00 16 3 C 0.13 2.18 2.55 45.34 0.12 2.29 16 4 H 0.07 1.34 7.83 -2.39 -0.02 1.33 16 5 C -0.09 -0.87 2.40 -9.61 -0.02 -0.90 16 6 H 0.10 0.76 7.79 -2.39 -0.02 0.75 16 7 C -0.14 -1.02 8.93 71.98 0.64 -0.37 16 8 C -0.12 -1.31 6.53 31.99 0.21 -1.11 16 9 C 0.09 1.56 6.14 86.86 0.53 2.09 16 10 N -0.58 -12.64 3.06 -789.64 -2.42 -15.06 16 11 C 0.52 14.49 7.65 87.27 0.67 15.16 16 12 O -0.52 -15.85 11.85 -3.24 -0.04 -15.89 16 13 C 0.50 15.49 7.73 87.27 0.67 16.17 16 14 O -0.54 -17.14 13.23 -3.23 -0.04 -17.19 16 15 N -0.58 -18.66 3.00 -818.63 -2.46 -21.11 16 16 C 0.12 4.00 6.63 86.51 0.57 4.57 16 17 C 0.06 2.24 5.47 86.54 0.47 2.72 16 18 N -0.54 -24.02 4.62 -898.89 -4.15 -28.17 16 19 C 0.21 11.35 4.72 85.56 0.40 11.75 16 20 C -0.52 -29.73 8.41 25.60 0.22 -29.52 16 21 H 0.07 3.70 7.13 -2.91 -0.02 3.67 16 22 C 0.00 0.05 5.46 84.65 0.46 0.51 16 23 N -0.94 -56.78 13.29 21.45 0.28 -56.50 16 24 Si 0.97 44.27 29.54 68.60 2.03 46.30 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 27 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 28 C 0.04 1.64 5.62 86.38 0.49 2.12 16 29 C 0.07 2.40 6.35 86.35 0.55 2.95 16 30 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.08 0.59 5.68 -2.39 -0.01 0.58 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.05 1.18 6.60 -2.39 -0.02 1.16 16 34 H 0.07 1.02 8.06 -2.39 -0.02 1.00 16 35 H 0.05 0.46 8.10 -2.39 -0.02 0.44 16 36 H 0.08 0.35 8.14 -2.38 -0.02 0.33 16 37 H 0.07 0.43 5.98 -2.39 -0.01 0.42 16 38 H 0.08 0.87 8.02 -2.38 -0.02 0.85 16 39 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.08 1.85 6.05 -2.39 -0.01 1.84 16 41 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 43 H 0.10 3.09 7.06 -2.39 -0.02 3.07 16 44 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.09 3.66 6.67 -2.39 -0.02 3.65 16 46 H -0.04 -2.46 8.12 -2.39 -0.02 -2.48 16 47 H 0.01 0.43 7.97 -2.39 -0.02 0.41 16 48 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 49 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 50 H 0.08 3.15 7.99 -2.39 -0.02 3.13 16 51 H 0.16 4.89 3.93 -74.40 -0.29 4.60 16 52 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 Total: -1.00 -68.21 393.77 0.63 -67.58 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.62 Total: 14.58 kcal Atomic # 6 Polarization: 18.65 SS G_CDS: 6.82 Total: 25.46 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -8.75 Total: -120.84 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.08 Total: -33.08 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -68.21 0.63 -67.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261865713.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.451 kcal (2) G-P(sol) polarization free energy of solvation -68.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds