Wall clock time and date at job start Tue Mar 31 2020 20:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47116 * 2 1 4 4 H 1.08999 * 109.87693 * 186.99900 * 3 2 1 5 5 C 1.54326 * 110.00979 * 65.90323 * 3 2 1 6 6 H 1.09001 * 110.72131 * 144.16417 * 5 3 2 7 7 C 1.52993 * 110.71913 * 21.06406 * 5 3 2 8 8 C 1.55155 * 102.94366 * 262.70045 * 5 3 2 9 9 C 1.55129 * 101.48682 * 324.33563 * 8 5 3 10 10 N 1.47027 * 109.88331 * 308.01693 * 3 2 1 11 11 C 1.34771 * 125.65025 * 300.59306 * 10 3 2 12 12 O 1.21355 * 119.99833 * 6.00394 * 11 10 3 13 13 C 1.49447 * 120.00235 * 186.00489 * 11 10 3 14 14 O 1.21347 * 119.99735 * 353.48005 * 13 11 10 15 15 N 1.34776 * 119.99905 * 173.20454 * 13 11 10 16 16 C 1.47087 * 120.87920 * 171.93800 * 15 13 11 17 17 C 1.53700 * 108.27278 * 128.75676 * 16 15 13 18 18 N 1.46892 * 109.25737 * 54.08686 * 17 16 15 19 19 C 1.46901 * 111.00069 * 172.60881 * 18 17 16 20 20 C 1.50701 * 109.46559 * 294.29749 * 19 18 17 21 21 H 1.07997 * 120.00514 * 359.97438 * 20 19 18 22 22 C 1.37883 * 119.99691 * 179.97438 * 20 19 18 23 23 N 1.31509 * 120.00193 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99879 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46747 * 60.00589 * 24 22 20 26 26 H 1.48502 * 109.46925 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47112 * 300.00413 * 24 22 20 28 28 C 1.46903 * 111.26901 * 296.75092 * 18 17 16 29 29 C 1.47075 * 120.88427 * 352.22060 * 15 13 11 30 30 H 1.08997 * 109.46579 * 305.62313 * 1 2 3 31 31 H 1.08996 * 109.47041 * 65.62567 * 1 2 3 32 32 H 1.08998 * 109.46886 * 185.62257 * 1 2 3 33 33 H 1.09007 * 109.47107 * 240.00286 * 2 1 3 34 34 H 1.08998 * 109.47167 * 120.00770 * 2 1 3 35 35 H 1.09001 * 109.47300 * 64.65889 * 7 5 3 36 36 H 1.09006 * 109.46968 * 184.65370 * 7 5 3 37 37 H 1.08995 * 109.47505 * 304.65581 * 7 5 3 38 38 H 1.09007 * 111.00358 * 82.56741 * 8 5 3 39 39 H 1.09000 * 111.00721 * 206.38529 * 8 5 3 40 40 H 1.09001 * 110.49728 * 278.45308 * 9 8 5 41 41 H 1.08996 * 110.34608 * 156.05794 * 9 8 5 42 42 H 1.08995 * 109.62725 * 248.52583 * 16 15 13 43 43 H 1.08997 * 109.62534 * 9.10779 * 16 15 13 44 44 H 1.09000 * 109.64892 * 294.07812 * 17 16 15 45 45 H 1.09005 * 109.43964 * 173.96241 * 17 16 15 46 46 H 1.08996 * 109.46970 * 54.29504 * 19 18 17 47 47 H 1.08998 * 109.47166 * 174.29842 * 19 18 17 48 48 H 0.96998 * 120.00462 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.49488 * 303.15309 * 28 18 17 50 50 H 1.08995 * 109.49481 * 183.06670 * 28 18 17 51 51 H 1.09001 * 109.62935 * 350.89128 * 29 15 13 52 52 H 1.09002 * 109.63181 * 111.47537 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1228 1.4527 -0.1249 5 6 1.6579 2.1377 1.3237 6 1 2.4438 2.8235 1.6401 7 6 1.3724 1.1042 2.4151 8 6 0.3664 2.9119 0.9495 9 6 0.6749 3.3404 -0.5092 10 7 1.4039 2.1977 -1.0893 11 6 1.4794 1.8985 -2.4012 12 8 2.0221 0.8739 -2.7595 13 6 0.8949 2.8283 -3.4146 14 8 0.2501 3.7910 -3.0541 15 7 1.0888 2.6008 -4.7288 16 6 0.3817 3.3953 -5.7448 17 6 1.4188 3.9341 -6.7430 18 7 2.2103 2.8149 -7.2708 19 6 3.0941 3.2607 -8.3562 20 6 2.2616 3.7060 -9.5308 21 1 1.1839 3.6618 -9.4766 22 6 2.8759 4.1699 -10.6747 23 7 4.1882 4.2233 -10.7410 24 14 1.8440 4.7213 -12.1310 25 1 0.9630 5.8427 -11.7170 26 1 2.7374 5.1721 -13.2283 27 1 1.0116 3.5869 -12.6056 28 6 2.9768 2.1551 -6.2053 29 6 2.0082 1.5474 -5.1851 30 1 -0.3632 0.5986 0.8354 31 1 -0.3633 0.4241 -0.9360 32 1 -0.3633 -1.0227 0.1007 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.2844 0.5510 2.6392 36 1 1.0254 1.6124 3.3149 37 1 0.6039 0.4130 2.0690 38 1 -0.5062 2.2600 0.9923 39 1 0.2330 3.7826 1.5914 40 1 1.2992 4.2338 -0.5206 41 1 -0.2511 3.5167 -1.0563 42 1 -0.3394 2.7653 -6.2656 43 1 -0.1338 4.2274 -5.2654 44 1 2.0787 4.6410 -6.2401 45 1 0.9060 4.4358 -7.5637 46 1 3.7057 4.0930 -8.0080 47 1 3.7402 2.4372 -8.6601 48 1 4.6204 4.5493 -11.5458 49 1 3.6150 2.8868 -5.7098 50 1 3.5936 1.3663 -6.6359 51 1 2.5686 1.1574 -4.3355 52 1 1.4405 0.7433 -5.6532 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261865714.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:02 Heat of formation + Delta-G solvation = -50.397828 kcal Electronic energy + Delta-G solvation = -30923.532518 eV Core-core repulsion = 26923.414986 eV Total energy + Delta-G solvation = -4000.117532 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.31336 -40.84567 -39.15624 -38.99391 -36.14260 -34.73850 -34.34058 -33.06062 -32.21839 -30.27746 -29.83438 -28.48575 -27.37359 -25.59987 -24.64758 -24.16352 -23.67751 -22.85593 -21.69331 -20.39112 -19.81533 -18.59461 -18.30331 -18.12889 -17.54685 -17.21454 -16.86520 -16.61889 -16.13780 -16.05184 -15.71642 -15.47474 -15.27794 -15.06123 -14.74502 -14.36829 -14.35045 -14.11516 -13.98403 -13.89530 -13.56218 -13.30901 -13.13848 -12.94086 -12.80959 -12.73554 -12.68429 -12.56061 -12.49103 -12.37338 -12.26406 -12.14059 -11.89609 -11.76152 -11.62229 -11.45128 -11.34173 -10.95548 -10.63187 -10.27339 -9.99515 -9.76184 -9.11945 -8.21602 -6.32190 0.25846 1.13086 1.41810 1.45094 1.52799 2.01713 2.24410 2.40197 3.01007 3.10229 3.20648 3.54663 3.59350 3.87448 3.89692 3.97650 4.05299 4.16216 4.19703 4.22395 4.25950 4.36507 4.41621 4.50329 4.59564 4.63738 4.68467 4.75681 4.77158 4.86409 4.87681 4.88912 4.96865 4.99806 5.01625 5.07898 5.10498 5.15231 5.17427 5.18240 5.27308 5.30294 5.34902 5.43372 5.61641 5.63911 5.95711 6.00719 6.16220 6.23514 6.50829 6.52717 6.82532 6.84619 7.37531 8.89503 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030830 B = 0.002311 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.999308 B =12113.957993 C =12430.093033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.134 4.134 3 C 0.130 3.870 4 H 0.072 0.928 5 C -0.091 4.091 6 H 0.095 0.905 7 C -0.153 4.153 8 C -0.125 4.125 9 C 0.093 3.907 10 N -0.579 5.579 11 C 0.520 3.480 12 O -0.526 6.526 13 C 0.504 3.496 14 O -0.539 6.539 15 N -0.581 5.581 16 C 0.123 3.877 17 C 0.056 3.944 18 N -0.540 5.540 19 C 0.209 3.791 20 C -0.524 4.524 21 H 0.068 0.932 22 C 0.001 3.999 23 N -0.935 5.935 24 Si 0.971 3.029 25 H -0.266 1.266 26 H -0.285 1.285 27 H -0.267 1.267 28 C 0.041 3.959 29 C 0.096 3.904 30 H 0.086 0.914 31 H 0.024 0.976 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.012 0.988 45 H 0.087 0.913 46 H -0.041 1.041 47 H 0.008 0.992 48 H 0.265 0.735 49 H 0.015 0.985 50 H 0.086 0.914 51 H 0.139 0.861 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.153 -5.830 29.416 31.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.172 4.172 3 C 0.028 3.972 4 H 0.090 0.910 5 C -0.110 4.110 6 H 0.113 0.887 7 C -0.210 4.210 8 C -0.163 4.163 9 C -0.029 4.029 10 N -0.311 5.311 11 C 0.304 3.696 12 O -0.405 6.405 13 C 0.287 3.713 14 O -0.417 6.417 15 N -0.314 5.314 16 C 0.001 3.999 17 C -0.073 4.073 18 N -0.265 5.265 19 C 0.083 3.917 20 C -0.563 4.563 21 H 0.086 0.914 22 C -0.197 4.197 23 N -0.575 5.575 24 Si 0.796 3.204 25 H -0.191 1.191 26 H -0.210 1.210 27 H -0.192 1.192 28 C -0.088 4.088 29 C -0.026 4.026 30 H 0.104 0.896 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.117 0.883 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.125 0.875 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.119 0.881 44 H 0.030 0.970 45 H 0.105 0.895 46 H -0.023 1.023 47 H 0.026 0.974 48 H 0.073 0.927 49 H 0.034 0.966 50 H 0.104 0.896 51 H 0.156 0.844 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.380 -6.173 29.032 30.842 hybrid contribution 0.811 1.068 -1.320 1.882 sum -7.568 -5.104 27.713 29.177 Atomic orbital electron populations 1.22016 0.95373 1.02091 1.01440 1.21911 0.96877 0.95238 1.03144 1.22026 0.96802 0.92328 0.86013 0.90953 1.22242 0.98279 0.97860 0.92573 0.88678 1.22094 1.02898 0.98607 0.97392 1.23133 0.98018 1.01670 0.93482 1.22777 0.97215 0.87818 0.95080 1.48439 1.49758 1.29031 1.03887 1.19661 0.80872 0.86068 0.83016 1.90504 1.45051 1.26467 1.78499 1.20243 0.81732 0.85684 0.83634 1.90673 1.41911 1.29349 1.79763 1.48180 1.42928 1.35684 1.04566 1.21982 0.94045 0.96238 0.87589 1.22366 0.95665 0.92049 0.97184 1.62053 1.26437 1.28557 1.09428 1.19379 0.90980 0.92501 0.88878 1.21422 0.93813 1.42037 0.98979 0.91424 1.25947 0.96155 0.95796 1.01841 1.70081 1.10026 1.47900 1.29530 0.85403 0.78233 0.78937 0.77846 1.19107 1.21042 1.19203 1.22526 0.95425 0.98434 0.92429 1.22820 0.91567 0.88742 0.99470 0.89602 0.95646 0.92294 0.92994 0.88267 0.91698 0.90939 0.90731 0.89473 0.87517 0.90987 0.89812 0.89232 0.88102 0.96975 0.89458 1.02346 0.97395 0.92670 0.96625 0.89608 0.84377 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.29 71.98 0.60 -1.68 16 2 C -0.13 -2.08 4.92 30.59 0.15 -1.93 16 3 C 0.13 2.08 3.29 45.34 0.15 2.22 16 4 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 5 C -0.09 -0.85 3.36 -9.61 -0.03 -0.88 16 6 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 7 C -0.15 -0.92 7.88 71.98 0.57 -0.35 16 8 C -0.13 -1.22 6.00 32.06 0.19 -1.03 16 9 C 0.09 1.62 5.98 86.93 0.52 2.14 16 10 N -0.58 -12.28 2.21 -789.18 -1.75 -14.03 16 11 C 0.52 14.34 7.20 87.27 0.63 14.97 16 12 O -0.53 -15.79 12.02 -3.26 -0.04 -15.83 16 13 C 0.50 15.50 7.71 87.27 0.67 16.17 16 14 O -0.54 -17.29 13.34 -3.24 -0.04 -17.33 16 15 N -0.58 -18.72 3.00 -818.62 -2.46 -21.18 16 16 C 0.12 4.01 6.65 86.50 0.57 4.58 16 17 C 0.06 2.24 5.47 86.54 0.47 2.72 16 18 N -0.54 -23.86 4.62 -898.87 -4.15 -28.02 16 19 C 0.21 11.30 4.72 85.56 0.40 11.70 16 20 C -0.52 -29.65 8.41 25.60 0.22 -29.44 16 21 H 0.07 3.69 7.13 -2.91 -0.02 3.67 16 22 C 0.00 0.04 5.46 84.66 0.46 0.50 16 23 N -0.94 -56.67 13.29 21.45 0.28 -56.39 16 24 Si 0.97 44.23 29.54 68.60 2.03 46.25 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 28 C 0.04 1.54 5.62 86.38 0.49 2.03 16 29 C 0.10 3.06 6.11 86.35 0.53 3.59 16 30 H 0.09 0.94 3.38 -2.39 -0.01 0.93 16 31 H 0.02 0.51 7.31 -2.39 -0.02 0.49 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 1.12 6.83 -2.38 -0.02 1.10 16 34 H 0.10 1.08 6.33 -2.39 -0.02 1.06 16 35 H 0.06 0.35 7.79 -2.39 -0.02 0.33 16 36 H 0.07 0.29 8.14 -2.38 -0.02 0.27 16 37 H 0.07 0.49 4.26 -2.39 -0.01 0.48 16 38 H 0.09 0.81 5.77 -2.38 -0.01 0.80 16 39 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.08 1.75 6.35 -2.39 -0.02 1.74 16 42 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 43 H 0.10 3.08 7.05 -2.39 -0.02 3.07 16 44 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.09 3.65 6.67 -2.38 -0.02 3.64 16 46 H -0.04 -2.45 8.12 -2.39 -0.02 -2.46 16 47 H 0.01 0.46 7.97 -2.39 -0.02 0.44 16 48 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 49 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.09 3.16 7.99 -2.39 -0.02 3.14 16 51 H 0.14 4.31 4.44 -38.90 -0.17 4.14 16 52 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -68.27 383.52 1.22 -67.06 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.76 Total: 14.14 kcal Atomic # 6 Polarization: 18.73 SS G_CDS: 6.59 Total: 25.32 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -8.07 Total: -119.61 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -0.08 Total: -33.16 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -68.27 1.22 -67.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261865714.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.657 kcal (2) G-P(sol) polarization free energy of solvation -68.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds