Wall clock time and date at job start Tue Mar 31 2020 20:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46917 * 2 1 4 4 H 1.09000 * 109.87700 * 55.05971 * 3 2 1 5 5 C 1.54320 * 109.88911 * 294.02417 * 3 2 1 6 6 H 1.09001 * 110.70694 * 336.69417 * 5 3 2 7 7 N 1.46497 * 110.70452 * 99.93226 * 5 3 2 8 8 C 1.34778 * 120.00152 * 204.99915 * 7 5 3 9 9 O 1.21281 * 119.99789 * 359.97438 * 8 7 5 10 10 C 1.50694 * 120.00078 * 180.02562 * 8 7 5 11 11 H 1.09001 * 115.54878 * 325.58040 * 10 8 7 12 12 C 1.52994 * 117.50042 * 111.25391 * 10 8 7 13 13 C 1.53001 * 117.49759 * 179.91531 * 10 8 7 14 14 C 1.52999 * 117.49927 * 359.97438 * 13 10 8 15 15 C 1.53001 * 117.50013 * 145.02017 * 13 10 8 16 16 C 1.55401 * 102.89638 * 218.41071 * 5 3 2 17 17 C 1.54901 * 101.74534 * 35.48048 * 16 5 3 18 18 N 1.47449 * 109.88447 * 176.08992 * 3 2 1 19 19 C 1.46899 * 110.99933 * 356.14753 * 18 3 2 20 20 C 1.50700 * 109.47150 * 176.60225 * 19 18 3 21 21 O 1.21295 * 119.99710 * 0.02562 * 20 19 18 22 22 N 1.34775 * 120.00534 * 180.02562 * 20 19 18 23 23 C 1.37093 * 120.00133 * 179.97438 * 22 20 19 24 24 H 1.07993 * 120.00277 * 359.97438 * 23 22 20 25 25 C 1.38954 * 119.99779 * 180.02562 * 23 22 20 26 26 N 1.31418 * 120.00000 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 119.99865 * 179.97438 * 25 23 22 28 28 H 1.48490 * 109.47298 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.46825 * 120.00288 * 27 25 23 30 30 H 1.48503 * 109.46903 * 239.99890 * 27 25 23 31 31 H 1.09005 * 109.46772 * 295.33742 * 1 2 3 32 32 H 1.09006 * 109.47197 * 55.32943 * 1 2 3 33 33 H 1.08996 * 109.47176 * 175.32837 * 1 2 3 34 34 H 1.08995 * 109.47173 * 120.00185 * 2 1 3 35 35 H 1.09003 * 109.46944 * 240.00422 * 2 1 3 36 36 H 0.97000 * 120.00107 * 24.99353 * 7 5 3 37 37 H 1.09006 * 117.49865 * 214.97852 * 12 10 8 38 38 H 1.09000 * 117.49942 * 359.97201 * 12 10 8 39 39 H 1.09003 * 109.46627 * 60.00861 * 14 13 10 40 40 H 1.08997 * 109.47342 * 179.97438 * 14 13 10 41 41 H 1.08998 * 109.47810 * 300.00767 * 14 13 10 42 42 H 1.08998 * 109.47191 * 59.99691 * 15 13 10 43 43 H 1.09002 * 109.46702 * 179.97438 * 15 13 10 44 44 H 1.09002 * 109.46892 * 299.99465 * 15 13 10 45 45 H 1.08999 * 110.86869 * 277.39050 * 16 5 3 46 46 H 1.08994 * 111.05571 * 153.65446 * 16 5 3 47 47 H 1.08993 * 110.37827 * 204.18722 * 17 16 5 48 48 H 1.09004 * 110.37171 * 81.84581 * 17 16 5 49 49 H 1.09004 * 109.47523 * 296.60174 * 19 18 3 50 50 H 1.08998 * 109.47336 * 56.59951 * 19 18 3 51 51 H 0.96999 * 119.99554 * 0.02562 * 22 20 19 52 52 H 0.96997 * 119.99758 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6100 1.9877 0.8403 5 6 1.6580 2.1345 -1.3254 6 1 1.4942 1.3975 -2.1117 7 7 0.4723 2.9762 -1.1473 8 6 -0.3185 3.2583 -2.2016 9 8 -0.0482 2.8157 -3.2979 10 6 -1.5378 4.1247 -2.0185 11 1 -2.0525 4.0162 -1.0638 12 6 -1.5189 5.5150 -2.6568 13 6 -2.3938 4.4100 -3.2541 14 6 -1.9459 3.7943 -4.5813 15 6 -3.9066 4.5217 -3.0551 16 6 2.9096 3.0010 -1.6377 17 6 4.0561 2.0969 -1.1204 18 7 3.5114 1.4543 0.0946 19 6 4.0397 0.0927 0.2520 20 6 5.5461 0.1363 0.2612 21 8 6.1227 1.1973 0.1482 22 7 6.2525 -1.0037 0.3949 23 6 7.6228 -0.9640 0.4028 24 1 8.1363 -0.0194 0.3014 25 6 8.3511 -2.1394 0.5401 26 7 7.7262 -3.2891 0.6620 27 14 10.2182 -2.0855 0.5501 28 1 10.6737 -0.6804 0.3979 29 1 10.7223 -2.6323 1.8355 30 1 10.7430 -2.9011 -0.5745 31 1 -0.3633 0.4398 0.9289 32 1 -0.3634 0.5846 -0.8452 33 1 -0.3633 -1.0242 -0.0837 34 1 1.8934 -0.5138 0.8899 35 1 1.8934 -0.5138 -0.8900 36 1 0.2563 3.3305 -0.2706 37 1 -2.0216 6.3211 -2.1223 38 1 -0.6244 5.8032 -3.2089 39 1 -1.9257 2.7083 -4.4894 40 1 -2.6445 4.0790 -5.3680 41 1 -0.9488 4.1563 -4.8317 42 1 -4.1228 5.3340 -2.3612 43 1 -4.3850 4.7257 -4.0131 44 1 -4.2898 3.5854 -2.6493 45 1 2.8768 3.9423 -1.0891 46 1 3.0055 3.1789 -2.7087 47 1 4.9308 2.6979 -0.8722 48 1 4.3112 1.3438 -1.8660 49 1 3.6827 -0.3293 1.1915 50 1 3.6992 -0.5273 -0.5773 51 1 5.7913 -1.8523 0.4849 52 1 8.2346 -4.1096 0.7583 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264049147.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:39 Heat of formation + Delta-G solvation = -43.192941 kcal Electronic energy + Delta-G solvation = -30096.459522 eV Core-core repulsion = 26096.654417 eV Total energy + Delta-G solvation = -3999.805105 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.71386 -39.67305 -37.92543 -37.13205 -34.52535 -33.89428 -33.21545 -31.38417 -30.91841 -29.65402 -27.71910 -27.57545 -26.58789 -24.56225 -24.10600 -22.80747 -21.29982 -20.68495 -20.27911 -19.28232 -18.67823 -17.74224 -17.33019 -16.73040 -15.98671 -15.49287 -15.30751 -14.86576 -14.70017 -14.59072 -14.35255 -14.17189 -13.92957 -13.81776 -13.74083 -13.42702 -13.02353 -12.86937 -12.79560 -12.55506 -12.27266 -12.20159 -12.12071 -11.95306 -11.84639 -11.53239 -11.49616 -11.32416 -11.18342 -11.03774 -10.97799 -10.91028 -10.52647 -10.45993 -10.33046 -10.22161 -10.17504 -9.64494 -9.49930 -9.07991 -8.37418 -7.97201 -7.84236 -6.41419 -3.82003 2.32400 2.90683 3.16506 3.27116 3.34313 3.44515 3.90344 4.03968 4.22517 4.30263 4.36601 4.44053 4.53440 4.71038 4.76586 4.81952 4.87320 5.03328 5.14601 5.22136 5.23758 5.27601 5.32607 5.35087 5.36401 5.43324 5.55773 5.58765 5.61416 5.62764 5.70937 5.77025 5.78214 5.83517 5.90137 5.90992 5.97493 6.01260 6.08687 6.16497 6.24468 6.28701 6.32177 6.46642 6.63156 7.24615 7.28728 7.37863 7.55885 8.06774 8.10742 8.62044 9.18605 9.54784 10.06392 10.76391 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027851 B = 0.002105 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.103955 B =13297.024286 C =13679.688242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.145 4.145 3 C 0.068 3.932 4 H 0.087 0.913 5 C 0.129 3.871 6 H 0.097 0.903 7 N -0.713 5.713 8 C 0.543 3.457 9 O -0.534 6.534 10 C -0.189 4.189 11 H 0.121 0.879 12 C -0.147 4.147 13 C -0.094 4.094 14 C -0.103 4.103 15 C -0.117 4.117 16 C -0.143 4.143 17 C 0.058 3.942 18 N -0.499 5.499 19 C 0.037 3.963 20 C 0.441 3.559 21 O -0.580 6.580 22 N -0.564 5.564 23 C -0.297 4.297 24 H 0.104 0.896 25 C 0.021 3.979 26 N -0.902 5.902 27 Si 0.929 3.071 28 H -0.268 1.268 29 H -0.282 1.282 30 H -0.282 1.282 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.400 0.600 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.048 0.952 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.104 0.896 48 H 0.043 0.957 49 H 0.091 0.909 50 H 0.053 0.947 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.351 12.029 -3.842 26.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.184 4.184 3 C -0.041 4.041 4 H 0.105 0.895 5 C 0.023 3.977 6 H 0.115 0.885 7 N -0.364 5.364 8 C 0.329 3.671 9 O -0.411 6.411 10 C -0.210 4.210 11 H 0.139 0.861 12 C -0.184 4.184 13 C -0.095 4.095 14 C -0.160 4.160 15 C -0.174 4.174 16 C -0.182 4.182 17 C -0.069 4.069 18 N -0.222 5.222 19 C -0.095 4.095 20 C 0.227 3.773 21 O -0.465 6.465 22 N -0.200 5.200 23 C -0.427 4.427 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.543 5.543 27 Si 0.756 3.244 28 H -0.192 1.192 29 H -0.208 1.208 30 H -0.208 1.208 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.235 0.765 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.122 0.878 48 H 0.061 0.939 49 H 0.109 0.891 50 H 0.071 0.929 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.496 12.494 -4.244 26.080 hybrid contribution 0.366 -1.047 0.072 1.111 sum -22.131 11.447 -4.172 25.263 Atomic orbital electron populations 1.21750 0.95520 1.01678 1.01698 1.22185 0.96333 0.96754 1.03085 1.22749 0.89400 0.95649 0.96288 0.89513 1.22369 0.84310 0.92761 0.98211 0.88532 1.45930 1.26547 1.52258 1.11624 1.19656 0.82995 0.80214 0.84211 1.90715 1.72953 1.52618 1.24797 1.22370 0.98834 0.99931 0.99914 0.86110 1.23226 1.02500 0.90140 1.02556 1.21599 0.93235 1.00899 0.93753 1.21353 1.00694 1.01408 0.92542 1.21400 0.91903 1.01876 1.02181 1.23231 0.94351 0.99198 1.01463 1.23017 0.97539 0.96909 0.89466 1.63570 1.02672 1.17468 1.38529 1.22193 0.95153 0.90288 1.01832 1.19788 0.88048 0.85029 0.84464 1.90494 1.71328 1.29578 1.55068 1.41851 1.07024 1.07435 1.63706 1.19743 0.81032 0.95189 1.46729 0.87861 1.25266 1.00693 0.94704 0.97367 1.69622 1.36484 0.98114 1.50086 0.85803 0.82313 0.78553 0.77697 1.19231 1.20763 1.20797 0.92792 0.92664 0.92739 0.90409 0.91467 0.76529 0.87895 0.88232 0.91393 0.93343 0.91651 0.92308 0.91623 0.91983 0.90621 0.90800 0.87807 0.93861 0.89090 0.92869 0.77508 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.80 37.16 0.36 -1.06 16 2 C -0.15 -1.66 4.04 -26.73 -0.11 -1.77 16 3 C 0.07 0.84 3.21 -66.72 -0.21 0.63 16 4 H 0.09 0.98 7.71 -51.93 -0.40 0.57 16 5 C 0.13 1.55 2.01 -65.97 -0.13 1.42 16 6 H 0.10 1.34 7.20 -51.93 -0.37 0.97 16 7 N -0.71 -6.83 4.57 -51.91 -0.24 -7.06 16 8 C 0.54 5.84 7.59 -10.99 -0.08 5.75 16 9 O -0.53 -7.58 12.75 5.56 0.07 -7.51 16 10 C -0.19 -1.50 5.91 -91.78 -0.54 -2.04 16 11 H 0.12 0.72 8.14 -51.93 -0.42 0.29 16 12 C -0.15 -1.05 9.53 -26.70 -0.25 -1.31 16 13 C -0.09 -0.75 2.70 -154.47 -0.42 -1.16 16 14 C -0.10 -0.99 8.09 37.16 0.30 -0.69 16 15 C -0.12 -0.68 9.85 37.16 0.37 -0.32 16 16 C -0.14 -1.92 6.77 -24.45 -0.17 -2.09 16 17 C 0.06 0.98 5.19 -2.30 -0.01 0.97 16 18 N -0.50 -8.13 5.10 -224.78 -1.15 -9.28 16 19 C 0.04 0.65 4.21 -4.98 -0.02 0.63 16 20 C 0.44 10.34 7.44 -10.99 -0.08 10.26 16 21 O -0.58 -15.38 13.61 5.54 0.08 -15.31 16 22 N -0.56 -14.25 5.29 -10.97 -0.06 -14.30 16 23 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 24 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 25 C 0.02 0.57 5.50 -17.46 -0.10 0.47 16 26 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 27 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 28 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 29 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 30 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.56 6.79 -51.93 -0.35 0.21 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.90 6.43 -51.93 -0.33 0.57 16 35 H 0.07 0.83 6.83 -51.93 -0.35 0.48 16 36 H 0.40 2.90 8.37 -40.82 -0.34 2.56 16 37 H 0.10 0.54 8.05 -51.93 -0.42 0.13 16 38 H 0.10 0.81 8.05 -51.93 -0.42 0.39 16 39 H 0.07 0.76 7.26 -51.93 -0.38 0.39 16 40 H 0.05 0.39 7.92 -51.93 -0.41 -0.02 16 41 H 0.06 0.73 7.02 -51.93 -0.36 0.36 16 42 H 0.06 0.28 7.90 -51.93 -0.41 -0.13 16 43 H 0.06 0.35 7.92 -51.93 -0.41 -0.06 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.10 2.03 6.84 -51.93 -0.36 1.67 16 48 H 0.04 0.78 7.73 -51.93 -0.40 0.38 16 49 H 0.09 1.47 6.85 -51.93 -0.36 1.11 16 50 H 0.05 0.88 6.40 -51.93 -0.33 0.54 16 51 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 52 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 404.25 15.07 6.09 6.09 Total: -1.00 -31.80 404.25 -9.53 -41.33 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -8.78 Total: 12.51 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -1.24 Total: 1.27 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.72 Total: -54.48 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: 0.15 Total: -22.82 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.80 -9.53 -41.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264049147.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.867 kcal (2) G-P(sol) polarization free energy of solvation -31.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds