Wall clock time and date at job start Tue Mar 31 2020 20:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46944 * 2 1 4 4 H 1.09000 * 110.72922 * 302.62933 * 3 2 1 5 5 C 1.54941 * 110.66768 * 179.52922 * 3 2 1 6 6 H 1.08998 * 110.87657 * 322.58580 * 5 3 2 7 7 N 1.46507 * 110.72004 * 85.79527 * 5 3 2 8 8 C 1.34776 * 119.99624 * 199.96044 * 7 5 3 9 9 O 1.21279 * 120.00321 * 359.97438 * 8 7 5 10 10 C 1.50702 * 119.99742 * 179.97438 * 8 7 5 11 11 C 1.53002 * 112.84889 * 48.79947 * 10 8 7 12 12 C 1.53780 * 113.61487 * 277.49247 * 10 8 7 13 13 C 1.53783 * 87.08040 * 220.01886 * 12 10 8 14 14 C 1.53781 * 113.61280 * 179.97438 * 10 8 7 15 15 C 1.54588 * 102.92057 * 204.15096 * 5 3 2 16 16 C 1.53994 * 105.14395 * 21.95950 * 15 5 3 17 17 N 1.47901 * 107.05400 * 1.22317 * 16 15 5 18 18 C 1.46906 * 110.99924 * 214.15461 * 17 16 15 19 19 C 1.50705 * 109.46969 * 302.97238 * 18 17 16 20 20 O 1.21293 * 119.99746 * 354.33724 * 19 18 17 21 21 N 1.34774 * 119.99820 * 174.34373 * 19 18 17 22 22 C 1.37094 * 120.00025 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99952 * 359.97438 * 22 21 19 24 24 C 1.38949 * 120.00071 * 180.02562 * 22 21 19 25 25 N 1.31414 * 120.00154 * 359.71582 * 24 22 21 26 26 Si 1.86800 * 119.99881 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47398 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47567 * 119.99773 * 26 24 22 29 29 H 1.48501 * 109.46872 * 239.99570 * 26 24 22 30 30 H 1.08994 * 109.47369 * 280.50736 * 1 2 3 31 31 H 1.09004 * 109.47304 * 40.50661 * 1 2 3 32 32 H 1.08997 * 109.46821 * 160.50196 * 1 2 3 33 33 H 1.08999 * 109.47571 * 240.00164 * 2 1 3 34 34 H 1.08993 * 109.46891 * 119.99650 * 2 1 3 35 35 H 0.96999 * 119.99675 * 19.95189 * 7 5 3 36 36 H 1.08998 * 109.47240 * 69.66477 * 11 10 8 37 37 H 1.08999 * 109.47142 * 189.66490 * 11 10 8 38 38 H 1.08993 * 109.47439 * 309.66467 * 11 10 8 39 39 H 1.09000 * 113.61105 * 334.57029 * 12 10 8 40 40 H 1.09000 * 113.61171 * 105.46720 * 12 10 8 41 41 H 1.08994 * 113.61180 * 270.88619 * 13 12 10 42 42 H 1.08998 * 113.61228 * 139.97670 * 13 12 10 43 43 H 1.09000 * 113.61419 * 254.53048 * 14 10 8 44 44 H 1.09001 * 113.61444 * 25.34670 * 14 10 8 45 45 H 1.09002 * 110.30883 * 263.04185 * 15 5 3 46 46 H 1.09001 * 110.39499 * 140.92228 * 15 5 3 47 47 H 1.08998 * 109.91921 * 241.87323 * 16 15 5 48 48 H 1.08993 * 110.07988 * 120.66764 * 16 15 5 49 49 H 1.08993 * 109.47263 * 182.97236 * 18 17 16 50 50 H 1.09001 * 109.46946 * 62.96697 * 18 17 16 51 51 H 0.97003 * 119.99756 * 359.97438 * 21 19 18 52 52 H 0.96992 * 120.00110 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6503 1.9895 -0.8585 5 6 3.5890 1.4750 0.0119 6 1 3.9894 0.6761 0.6360 7 7 4.1199 1.3816 -1.3504 8 6 5.3944 0.9924 -1.5516 9 8 6.1020 0.7200 -0.6051 10 6 5.9404 0.8959 -2.9530 11 6 5.6529 2.1440 -3.7899 12 6 5.5837 -0.4204 -3.6637 13 6 7.0121 -0.4084 -4.2333 14 6 7.4077 0.4393 -3.0123 15 6 3.9010 2.8584 0.6270 16 6 2.6329 3.2459 1.4099 17 7 1.6760 2.1272 1.2669 18 6 0.2929 2.6202 1.2203 19 6 0.0044 3.4247 2.4616 20 8 0.8291 3.4877 3.3487 21 7 -1.1701 4.0739 2.5859 22 6 -1.4324 4.8062 3.7148 23 1 -0.6981 4.8625 4.5047 24 6 -2.6435 5.4752 3.8432 25 7 -3.5353 5.4104 2.8801 26 14 -3.0012 6.4724 5.3817 27 1 -1.8420 6.3894 6.3060 28 1 -3.2370 7.8903 5.0090 29 1 -4.2093 5.9297 6.0535 30 1 -0.3634 0.1874 1.0104 31 1 -0.3634 0.7814 -0.6675 32 1 -0.3633 -0.9687 -0.3430 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 3.5540 1.5998 -2.1074 36 1 6.2458 2.9779 -3.4142 37 1 5.9145 1.9519 -4.8305 38 1 4.5936 2.3914 -3.7214 39 1 5.3930 -1.2478 -2.9803 40 1 4.8098 -0.3105 -4.4233 41 1 7.0999 0.1233 -5.1806 42 1 7.4824 -1.3915 -4.2532 43 1 8.1059 1.2430 -3.2462 44 1 7.7162 -0.1518 -2.1500 45 1 4.0972 3.5868 -0.1598 46 1 4.7555 2.7907 1.3005 47 1 2.2035 4.1573 0.9938 48 1 2.8739 3.3961 2.4622 49 1 -0.3926 1.7745 1.1680 50 1 0.1610 3.2499 0.3405 51 1 -1.8295 4.0237 1.8762 52 1 -4.3805 5.8777 2.9695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264615432.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:05 Heat of formation + Delta-G solvation = -50.901130 kcal Electronic energy + Delta-G solvation = -30260.380376 eV Core-core repulsion = 26260.241019 eV Total energy + Delta-G solvation = -4000.139357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.94569 -39.65611 -38.09925 -37.35597 -34.58402 -33.91129 -33.20465 -31.42279 -31.00564 -29.74086 -27.75595 -26.57702 -26.00432 -25.09446 -24.19929 -22.70530 -21.69849 -20.70073 -20.23424 -19.08413 -18.79949 -17.86446 -17.44399 -16.75158 -15.85632 -15.67665 -15.50502 -15.23171 -14.93051 -14.64761 -14.33140 -13.99726 -13.93731 -13.84673 -13.35816 -13.20308 -13.01889 -12.94817 -12.90606 -12.71766 -12.60886 -12.29294 -12.21846 -11.71451 -11.58057 -11.50293 -11.44488 -11.26414 -11.16903 -11.07751 -10.88371 -10.85342 -10.67145 -10.51689 -10.35539 -10.31874 -10.22852 -9.72553 -9.50301 -9.14658 -8.40418 -8.01721 -7.93097 -6.42274 -3.82828 2.46969 2.94959 3.15849 3.26555 3.33953 3.90744 4.04115 4.06088 4.13857 4.24849 4.35724 4.41526 4.43965 4.67618 4.69387 5.04276 5.05673 5.12105 5.14461 5.21289 5.23759 5.24738 5.26267 5.38594 5.39377 5.42428 5.42758 5.49420 5.61756 5.63412 5.65826 5.70876 5.77665 5.81646 5.83374 5.94775 6.01226 6.05215 6.05873 6.20695 6.24561 6.28120 6.39436 6.42636 6.61531 7.19924 7.23854 7.37032 7.55145 8.06103 8.09697 8.61366 9.18016 9.53969 10.05811 10.75591 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025167 B = 0.002193 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.314221 B =12762.969878 C =13119.960994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.105 4.105 3 C 0.058 3.942 4 H 0.054 0.946 5 C 0.147 3.853 6 H 0.102 0.898 7 N -0.719 5.719 8 C 0.529 3.471 9 O -0.536 6.536 10 C -0.112 4.112 11 C -0.127 4.127 12 C -0.121 4.121 13 C -0.141 4.141 14 C -0.114 4.114 15 C -0.142 4.142 16 C 0.048 3.952 17 N -0.482 5.482 18 C 0.025 3.975 19 C 0.442 3.558 20 O -0.578 6.578 21 N -0.565 5.565 22 C -0.297 4.297 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.398 0.602 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.040 0.960 48 H 0.101 0.899 49 H 0.105 0.895 50 H 0.045 0.955 51 H 0.391 0.609 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.193 -10.297 -18.678 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.143 4.143 3 C -0.051 4.051 4 H 0.072 0.928 5 C 0.042 3.958 6 H 0.120 0.880 7 N -0.370 5.370 8 C 0.315 3.685 9 O -0.412 6.412 10 C -0.115 4.115 11 C -0.185 4.185 12 C -0.159 4.159 13 C -0.178 4.178 14 C -0.152 4.152 15 C -0.181 4.181 16 C -0.080 4.080 17 N -0.206 5.206 18 C -0.106 4.106 19 C 0.227 3.773 20 O -0.462 6.462 21 N -0.202 5.202 22 C -0.426 4.426 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.232 0.768 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.113 0.887 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.059 0.941 48 H 0.119 0.881 49 H 0.123 0.877 50 H 0.063 0.937 51 H 0.224 0.776 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.090 -10.699 -16.927 25.074 hybrid contribution -1.258 1.361 -0.765 2.005 sum 13.832 -9.339 -17.692 24.322 Atomic orbital electron populations 1.22002 0.95702 1.01210 1.02544 1.21420 0.96145 0.94633 1.02142 1.23070 0.93224 0.96290 0.92554 0.92818 1.21889 0.92601 0.98670 0.82681 0.87974 1.46040 1.13084 1.69074 1.08824 1.20375 0.81509 0.75842 0.90761 1.90699 1.57975 1.48959 1.43600 1.22180 0.99156 0.97462 0.92744 1.21594 1.02039 0.95354 0.99467 1.22916 0.97918 0.95591 0.99433 1.22835 0.96273 1.00755 0.97974 1.22885 0.93637 0.99853 0.98846 1.22873 0.99258 0.96178 0.99806 1.22835 0.90524 0.92055 1.02547 1.64490 1.01643 1.24340 1.30159 1.22477 0.91448 0.99620 0.97092 1.19753 0.84001 0.84460 0.89053 1.90513 1.47116 1.65904 1.42619 1.41864 1.15039 1.43800 1.19471 1.19744 1.01540 1.24458 0.96901 0.87871 1.25258 0.95567 0.98344 0.98850 1.69617 1.08138 1.43891 1.32741 0.85808 0.78506 0.78963 0.81129 1.19219 1.20806 1.20753 0.91278 0.92834 0.92952 0.92013 0.90753 0.76771 0.91630 0.91229 0.91970 0.89639 0.90610 0.89904 0.91008 0.91026 0.88681 0.91648 0.90580 0.94131 0.88115 0.87744 0.93707 0.77553 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 8.35 37.16 0.31 -1.43 16 2 C -0.11 -1.18 5.69 -26.73 -0.15 -1.33 16 3 C 0.06 0.72 2.07 -65.78 -0.14 0.58 16 4 H 0.05 0.61 7.77 -51.93 -0.40 0.21 16 5 C 0.15 1.82 2.78 -66.07 -0.18 1.64 16 6 H 0.10 1.47 7.61 -51.93 -0.40 1.08 16 7 N -0.72 -7.10 5.03 -52.00 -0.26 -7.36 16 8 C 0.53 5.91 6.93 -10.98 -0.08 5.83 16 9 O -0.54 -8.21 15.62 5.56 0.09 -8.13 16 10 C -0.11 -0.88 1.26 -154.85 -0.19 -1.08 16 11 C -0.13 -0.76 8.98 37.16 0.33 -0.43 16 12 C -0.12 -0.78 7.20 -25.92 -0.19 -0.96 16 13 C -0.14 -0.83 7.73 -25.90 -0.20 -1.03 16 14 C -0.11 -0.91 7.00 -25.90 -0.18 -1.09 16 15 C -0.14 -1.96 6.67 -25.38 -0.17 -2.12 16 16 C 0.05 0.81 5.31 -2.75 -0.01 0.80 16 17 N -0.48 -7.89 4.84 -224.05 -1.08 -8.98 16 18 C 0.02 0.44 4.71 -4.97 -0.02 0.41 16 19 C 0.44 10.35 7.35 -10.98 -0.08 10.26 16 20 O -0.58 -15.45 13.94 5.55 0.08 -15.37 16 21 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 22 C -0.30 -8.25 9.68 -14.94 -0.14 -8.39 16 23 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -24.45 13.05 55.50 0.72 -23.72 16 26 Si 0.93 21.08 29.55 -169.99 -5.02 16.05 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 30 H 0.07 0.89 6.28 -51.93 -0.33 0.57 16 31 H 0.05 0.56 7.62 -51.93 -0.40 0.17 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.40 2.96 7.43 -40.82 -0.30 2.66 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.32 7.34 -51.93 -0.38 -0.06 16 38 H 0.06 0.32 7.04 -51.93 -0.37 -0.04 16 39 H 0.09 0.63 8.09 -51.93 -0.42 0.21 16 40 H 0.08 0.38 8.10 -51.93 -0.42 -0.04 16 41 H 0.08 0.39 7.64 -51.93 -0.40 -0.01 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 44 H 0.09 0.93 7.43 -51.93 -0.39 0.54 16 45 H 0.06 0.83 8.05 -51.93 -0.42 0.41 16 46 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 47 H 0.04 0.71 7.69 -51.93 -0.40 0.31 16 48 H 0.10 2.00 6.94 -51.93 -0.36 1.64 16 49 H 0.10 1.68 4.40 -51.93 -0.23 1.46 16 50 H 0.04 0.72 7.99 -51.93 -0.41 0.31 16 51 H 0.39 9.43 7.90 -40.82 -0.32 9.10 16 52 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 403.59 15.07 6.08 6.08 Total: -1.00 -32.35 403.59 -9.46 -41.81 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -8.81 Total: 11.76 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -1.20 Total: 2.14 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -0.68 Total: -54.34 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: 0.16 Total: -23.50 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.35 -9.46 -41.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264615432.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.089 kcal (2) G-P(sol) polarization free energy of solvation -32.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds