Wall clock time and date at job start Tue Mar 31 2020 20:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46422 * 2 1 4 4 H 1.09000 * 109.47094 * 55.00495 * 3 2 1 5 5 C 1.50706 * 109.46544 * 175.00128 * 3 2 1 6 6 O 1.21273 * 120.00108 * 120.00263 * 5 3 2 7 7 N 1.34775 * 120.00052 * 299.99564 * 5 3 2 8 8 C 1.46500 * 120.00147 * 180.02562 * 7 5 3 9 9 H 1.09000 * 110.64166 * 323.31358 * 8 7 5 10 10 C 1.55158 * 110.71895 * 86.45510 * 8 7 5 11 11 C 1.54908 * 101.57710 * 153.86682 * 10 8 7 12 12 N 1.47424 * 104.83567 * 322.98854 * 11 10 8 13 13 C 1.36936 * 125.64823 * 204.16620 * 12 11 10 14 14 H 1.07997 * 120.00004 * 146.00311 * 13 12 11 15 15 C 1.38808 * 120.00208 * 326.00808 * 13 12 11 16 16 N 1.31619 * 120.00162 * 162.68895 * 15 13 12 17 17 Si 1.86804 * 119.99908 * 342.68691 * 15 13 12 18 18 H 1.48499 * 109.46941 * 86.84481 * 17 15 13 19 19 H 1.48496 * 109.47382 * 206.84422 * 17 15 13 20 20 H 1.48500 * 109.47307 * 326.84531 * 17 15 13 21 21 C 1.47021 * 108.69927 * 24.12878 * 12 11 10 22 22 H 1.09000 * 109.88343 * 239.51791 * 21 12 11 23 23 C 1.53007 * 109.88030 * 118.36147 * 21 12 11 24 24 C 1.52999 * 109.47191 * 63.76709 * 23 21 12 25 25 N 1.46497 * 109.47093 * 294.99763 * 3 2 1 26 26 C 1.46758 * 124.34802 * 119.73200 * 25 3 2 27 27 C 1.54658 * 105.38556 * 162.85629 * 26 25 3 28 28 C 1.54625 * 101.68390 * 25.76031 * 27 26 25 29 29 C 1.34419 * 124.34865 * 300.02672 * 25 3 2 30 30 O 1.21276 * 124.94476 * 0.43174 * 29 25 3 31 31 H 1.08996 * 109.47059 * 299.99301 * 1 2 3 32 32 H 1.08992 * 109.46970 * 60.00495 * 1 2 3 33 33 H 1.09010 * 109.46568 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47236 * 239.99938 * 2 1 3 35 35 H 1.09001 * 109.47199 * 119.99402 * 2 1 3 36 36 H 0.97011 * 119.99770 * 0.02562 * 7 5 3 37 37 H 1.08997 * 110.99992 * 271.93959 * 10 8 7 38 38 H 1.08997 * 111.00609 * 35.75209 * 10 8 7 39 39 H 1.08994 * 110.36886 * 81.83125 * 11 10 8 40 40 H 1.09007 * 110.36523 * 204.04176 * 11 10 8 41 41 H 0.97003 * 119.99760 * 179.97438 * 16 15 13 42 42 H 1.08993 * 109.47125 * 183.76914 * 23 21 12 43 43 H 1.09005 * 109.46788 * 303.77315 * 23 21 12 44 44 H 1.08997 * 109.47228 * 171.95819 * 24 23 21 45 45 H 1.08998 * 109.47367 * 291.95913 * 24 23 21 46 46 H 1.09001 * 109.47291 * 51.95577 * 24 23 21 47 47 H 1.09008 * 110.24591 * 281.98183 * 26 25 3 48 48 H 1.08995 * 110.24874 * 43.97791 * 26 25 3 49 49 H 1.09000 * 111.19086 * 267.59461 * 27 26 25 50 50 H 1.08998 * 110.82811 * 143.77548 * 27 26 25 51 51 H 1.09002 * 110.49417 * 216.31599 * 28 27 26 52 52 H 1.09000 * 110.59621 * 93.72660 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5419 1.4445 0.1238 6 8 4.2215 1.9437 -0.7477 7 7 4.1297 0.8914 1.2031 8 6 5.5898 0.8936 1.3238 9 1 6.0561 0.7462 0.3496 10 6 6.0847 2.2119 1.9755 11 6 7.4216 1.7601 2.6143 12 7 7.1640 0.3928 3.1018 13 6 7.8431 -0.2358 4.1111 14 1 7.3261 -0.9249 4.7624 15 6 9.1960 0.0127 4.2972 16 7 9.7725 -0.3035 5.4374 17 14 10.1986 0.7960 2.9294 18 1 10.0990 2.2744 3.0270 19 1 11.6198 0.3859 3.0602 20 1 9.6740 0.3503 1.6136 21 6 6.0565 -0.1836 2.3254 22 1 5.2362 -0.4506 2.9917 23 6 6.5407 -1.4224 1.5691 24 6 6.9641 -2.4984 2.5710 25 7 1.6523 2.0975 -1.2518 26 6 0.8027 3.2914 -1.3332 27 6 1.0292 3.8601 -2.7535 28 6 1.4528 2.5942 -3.5338 29 6 2.0245 1.6788 -2.4737 30 8 2.7174 0.7082 -2.6942 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0278 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5137 0.8900 36 1 3.5860 0.4917 1.9001 37 1 6.2521 2.9813 1.2218 38 1 5.3850 2.5585 2.7359 39 1 8.2156 1.7533 1.8677 40 1 7.6869 2.4164 3.4432 41 1 10.7180 -0.1301 5.5673 42 1 5.7338 -1.8051 0.9443 43 1 7.3911 -1.1556 0.9415 44 1 7.1728 -3.4272 2.0402 45 1 7.8606 -2.1718 3.0979 46 1 6.1605 -2.6629 3.2889 47 1 -0.2439 3.0197 -1.1952 48 1 1.1056 4.0218 -0.5829 49 1 1.8248 4.6051 -2.7574 50 1 0.1056 4.2759 -3.1563 51 1 2.2125 2.8397 -4.2758 52 1 0.5893 2.1317 -4.0120 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264625812.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:57 Heat of formation + Delta-G solvation = -46.886914 kcal Electronic energy + Delta-G solvation = -31340.629305 eV Core-core repulsion = 27340.664018 eV Total energy + Delta-G solvation = -3999.965287 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.99489 -39.45240 -37.89549 -36.46393 -35.10843 -34.12088 -32.42544 -32.09977 -31.24471 -29.51103 -27.84200 -27.62808 -26.66740 -24.21488 -22.59211 -22.18398 -22.08595 -21.45814 -20.32451 -19.73717 -18.84748 -17.33950 -17.12986 -16.91525 -16.66892 -15.91688 -15.17992 -15.07155 -14.83019 -14.50441 -14.44221 -13.99621 -13.84352 -13.58026 -13.48850 -13.25034 -13.15440 -12.96194 -12.81122 -12.68717 -12.40317 -12.18165 -12.11659 -11.87482 -11.81787 -11.50053 -11.36724 -11.34879 -11.22586 -11.03928 -10.80815 -10.61553 -10.40444 -10.22852 -10.09690 -9.88848 -9.84108 -9.69859 -9.45496 -8.83804 -8.74869 -8.53125 -6.88495 -5.99645 -3.40270 2.45433 2.69268 2.75158 3.34992 3.36283 3.48505 3.54516 4.11388 4.17216 4.48542 4.53273 4.56573 4.62283 4.68176 4.80946 4.95903 5.00364 5.10732 5.16871 5.19103 5.21907 5.26539 5.34017 5.38146 5.41941 5.52629 5.63708 5.64201 5.66883 5.79705 5.84186 5.94269 5.96398 6.00689 6.15746 6.22720 6.30605 6.36875 6.47154 6.60401 6.65442 6.69534 6.78580 6.82788 6.97987 7.09338 7.44312 7.63055 7.86702 8.13121 8.30951 8.37005 8.82127 9.64451 10.20159 11.15819 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019883 B = 0.003006 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.888526 B = 9311.056807 C = 9810.457645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.138 4.138 3 C 0.144 3.856 4 H 0.112 0.888 5 C 0.503 3.497 6 O -0.521 6.521 7 N -0.714 5.714 8 C 0.136 3.864 9 H 0.093 0.907 10 C -0.139 4.139 11 C 0.117 3.883 12 N -0.598 5.598 13 C -0.234 4.234 14 H 0.088 0.912 15 C 0.032 3.968 16 N -0.906 5.906 17 Si 0.881 3.119 18 H -0.285 1.285 19 H -0.302 1.302 20 H -0.271 1.271 21 C 0.157 3.843 22 H 0.045 0.955 23 C -0.124 4.124 24 C -0.150 4.150 25 N -0.606 5.606 26 C 0.105 3.895 27 C -0.130 4.130 28 C -0.154 4.154 29 C 0.526 3.474 30 O -0.514 6.514 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.398 0.602 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.023 0.977 40 H 0.058 0.942 41 H 0.264 0.736 42 H 0.042 0.958 43 H 0.054 0.946 44 H 0.029 0.971 45 H 0.095 0.905 46 H 0.041 0.959 47 H 0.072 0.928 48 H 0.077 0.923 49 H 0.083 0.917 50 H 0.089 0.911 51 H 0.100 0.900 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.355 6.844 -12.622 27.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.176 4.176 3 C 0.037 3.963 4 H 0.130 0.870 5 C 0.286 3.714 6 O -0.396 6.396 7 N -0.366 5.366 8 C 0.031 3.969 9 H 0.111 0.889 10 C -0.179 4.179 11 C -0.008 4.008 12 N -0.325 5.325 13 C -0.362 4.362 14 H 0.105 0.895 15 C -0.168 4.168 16 N -0.549 5.549 17 Si 0.711 3.289 18 H -0.212 1.212 19 H -0.229 1.229 20 H -0.196 1.196 21 C 0.050 3.950 22 H 0.063 0.937 23 C -0.164 4.164 24 C -0.207 4.207 25 N -0.341 5.341 26 C -0.018 4.018 27 C -0.168 4.168 28 C -0.195 4.195 29 C 0.313 3.687 30 O -0.389 6.389 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.232 0.768 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.041 0.959 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.048 0.952 45 H 0.113 0.887 46 H 0.060 0.940 47 H 0.090 0.910 48 H 0.095 0.905 49 H 0.102 0.898 50 H 0.107 0.893 51 H 0.118 0.882 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -22.251 6.599 -13.145 26.673 hybrid contribution 0.505 0.354 -0.320 0.695 sum -21.746 6.953 -13.465 26.505 Atomic orbital electron populations 1.21706 0.94684 1.02085 1.01727 1.21916 0.96973 0.94186 1.04556 1.20878 0.92379 0.95649 0.87385 0.87029 1.20726 0.90173 0.78543 0.81937 1.90709 1.64897 1.44418 1.39562 1.45979 1.07894 1.60055 1.22682 1.22089 0.78622 0.96218 0.99943 0.88932 1.23112 0.98562 0.96722 0.99499 1.21908 0.94025 0.87934 0.96927 1.44696 1.39323 1.09586 1.38861 1.18443 0.90191 1.24143 1.03387 0.89465 1.25369 0.96358 0.98393 0.96679 1.69787 1.11964 1.50219 1.22880 0.86877 0.78998 0.78965 0.84067 1.21199 1.22933 1.19647 1.21228 0.92162 0.90929 0.90655 0.93737 1.21883 0.99711 0.96760 0.98005 1.21908 1.04018 0.96176 0.98645 1.47896 1.51183 1.29798 1.05257 1.22126 0.94431 0.86717 0.98519 1.22601 1.03017 0.97210 0.93974 1.22308 1.03005 0.96035 0.98121 1.20719 0.79037 0.84939 0.83964 1.90724 1.36589 1.28079 1.83467 0.92559 0.92739 0.92213 0.89604 0.90114 0.76757 0.91545 0.91120 0.95912 0.92333 0.92596 0.93926 0.92695 0.95227 0.88651 0.94011 0.90965 0.90467 0.89843 0.89279 0.88150 0.88109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.80 37.16 0.36 -0.66 16 2 C -0.14 -1.31 5.30 -26.72 -0.14 -1.45 16 3 C 0.14 1.49 2.67 -69.08 -0.18 1.31 16 4 H 0.11 0.82 8.07 -51.93 -0.42 0.40 16 5 C 0.50 7.34 6.85 -10.98 -0.08 7.26 16 6 O -0.52 -9.90 14.62 -9.03 -0.13 -10.03 16 7 N -0.71 -9.93 5.07 -52.03 -0.26 -10.20 16 8 C 0.14 2.38 2.76 -66.10 -0.18 2.20 16 9 H 0.09 1.83 7.41 -51.93 -0.38 1.45 16 10 C -0.14 -2.49 6.77 -24.58 -0.17 -2.65 16 11 C 0.12 2.55 4.97 -2.53 -0.01 2.53 16 12 N -0.60 -13.84 2.71 -162.58 -0.44 -14.28 16 13 C -0.23 -6.26 7.35 -15.06 -0.11 -6.37 16 14 H 0.09 2.49 7.81 -52.49 -0.41 2.08 16 15 C 0.03 0.91 5.46 -17.43 -0.10 0.81 16 16 N -0.91 -27.19 13.97 55.49 0.78 -26.42 16 17 Si 0.88 22.63 24.63 -169.99 -4.19 18.44 16 18 H -0.29 -7.17 7.10 56.52 0.40 -6.77 16 19 H -0.30 -7.87 7.11 56.52 0.40 -7.46 16 20 H -0.27 -6.96 6.85 56.52 0.39 -6.58 16 21 C 0.16 3.02 3.02 -66.95 -0.20 2.82 16 22 H 0.04 0.82 7.69 -51.93 -0.40 0.42 16 23 C -0.12 -2.39 5.49 -26.73 -0.15 -2.54 16 24 C -0.15 -2.97 9.02 37.16 0.34 -2.64 16 25 N -0.61 -6.20 2.08 -166.05 -0.34 -6.55 16 26 C 0.11 0.65 7.31 -3.03 -0.02 0.63 16 27 C -0.13 -0.71 7.19 -25.01 -0.18 -0.89 16 28 C -0.15 -1.25 6.86 -26.74 -0.18 -1.43 16 29 C 0.53 6.72 6.68 -10.86 -0.07 6.65 16 30 O -0.51 -9.03 15.35 -9.03 -0.14 -9.17 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.40 7.75 -51.93 -0.40 -0.01 16 33 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 34 H 0.09 1.10 6.62 -51.93 -0.34 0.75 16 35 H 0.08 0.68 7.43 -51.93 -0.39 0.29 16 36 H 0.40 4.41 7.67 -40.82 -0.31 4.10 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.02 0.53 5.32 -51.93 -0.28 0.26 16 40 H 0.06 1.32 7.98 -51.93 -0.41 0.90 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.09 2.23 5.59 -51.93 -0.29 1.94 16 46 H 0.04 0.78 8.13 -51.93 -0.42 0.36 16 47 H 0.07 0.30 8.14 -51.92 -0.42 -0.13 16 48 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 51 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 52 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 398.60 15.07 6.01 6.01 Total: -1.00 -35.42 398.60 -8.91 -44.33 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -9.11 Total: 2.29 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -1.08 Total: 5.58 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: -0.27 Total: -57.44 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.27 Total: -19.20 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.19 Total: 18.44 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.42 -8.91 -44.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264625812.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.556 kcal (2) G-P(sol) polarization free energy of solvation -35.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds