Wall clock time and date at job start Tue Mar 31 2020 20:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46422 * 2 1 4 4 H 1.09000 * 109.47094 * 55.00495 * 3 2 1 5 5 C 1.50706 * 109.46544 * 175.00128 * 3 2 1 6 6 O 1.21273 * 120.00108 * 120.00263 * 5 3 2 7 7 N 1.34775 * 120.00052 * 299.99564 * 5 3 2 8 8 C 1.46500 * 120.00147 * 180.02562 * 7 5 3 9 9 H 1.09000 * 110.64166 * 323.31358 * 8 7 5 10 10 C 1.55158 * 110.71895 * 86.45510 * 8 7 5 11 11 C 1.54908 * 101.57710 * 153.86682 * 10 8 7 12 12 N 1.47424 * 104.83567 * 322.98854 * 11 10 8 13 13 C 1.36936 * 125.64823 * 204.16620 * 12 11 10 14 14 H 1.07997 * 120.00004 * 146.00311 * 13 12 11 15 15 C 1.38808 * 120.00208 * 326.00808 * 13 12 11 16 16 N 1.31619 * 120.00162 * 162.68895 * 15 13 12 17 17 Si 1.86804 * 119.99908 * 342.68691 * 15 13 12 18 18 H 1.48499 * 109.46941 * 86.84481 * 17 15 13 19 19 H 1.48496 * 109.47382 * 206.84422 * 17 15 13 20 20 H 1.48500 * 109.47307 * 326.84531 * 17 15 13 21 21 C 1.47021 * 108.69927 * 24.12878 * 12 11 10 22 22 H 1.09000 * 109.88343 * 239.51791 * 21 12 11 23 23 C 1.53007 * 109.88030 * 118.36147 * 21 12 11 24 24 C 1.52999 * 109.47191 * 63.76709 * 23 21 12 25 25 N 1.46497 * 109.47093 * 294.99763 * 3 2 1 26 26 C 1.46758 * 124.34802 * 119.73200 * 25 3 2 27 27 C 1.54658 * 105.38556 * 162.85629 * 26 25 3 28 28 C 1.54625 * 101.68390 * 25.76031 * 27 26 25 29 29 C 1.34419 * 124.34865 * 300.02672 * 25 3 2 30 30 O 1.21276 * 124.94476 * 0.43174 * 29 25 3 31 31 H 1.08996 * 109.47059 * 299.99301 * 1 2 3 32 32 H 1.08992 * 109.46970 * 60.00495 * 1 2 3 33 33 H 1.09010 * 109.46568 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47236 * 239.99938 * 2 1 3 35 35 H 1.09001 * 109.47199 * 119.99402 * 2 1 3 36 36 H 0.97011 * 119.99770 * 0.02562 * 7 5 3 37 37 H 1.08997 * 110.99992 * 271.93959 * 10 8 7 38 38 H 1.08997 * 111.00609 * 35.75209 * 10 8 7 39 39 H 1.08994 * 110.36886 * 81.83125 * 11 10 8 40 40 H 1.09007 * 110.36523 * 204.04176 * 11 10 8 41 41 H 0.97003 * 119.99760 * 179.97438 * 16 15 13 42 42 H 1.08993 * 109.47125 * 183.76914 * 23 21 12 43 43 H 1.09005 * 109.46788 * 303.77315 * 23 21 12 44 44 H 1.08997 * 109.47228 * 171.95819 * 24 23 21 45 45 H 1.08998 * 109.47367 * 291.95913 * 24 23 21 46 46 H 1.09001 * 109.47291 * 51.95577 * 24 23 21 47 47 H 1.09008 * 110.24591 * 281.98183 * 26 25 3 48 48 H 1.08995 * 110.24874 * 43.97791 * 26 25 3 49 49 H 1.09000 * 111.19086 * 267.59461 * 27 26 25 50 50 H 1.08998 * 110.82811 * 143.77548 * 27 26 25 51 51 H 1.09002 * 110.49417 * 216.31599 * 28 27 26 52 52 H 1.09000 * 110.59621 * 93.72660 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5419 1.4445 0.1238 6 8 4.2215 1.9437 -0.7477 7 7 4.1297 0.8914 1.2031 8 6 5.5898 0.8936 1.3238 9 1 6.0561 0.7462 0.3496 10 6 6.0847 2.2119 1.9755 11 6 7.4216 1.7601 2.6143 12 7 7.1640 0.3928 3.1018 13 6 7.8431 -0.2358 4.1111 14 1 7.3261 -0.9249 4.7624 15 6 9.1960 0.0127 4.2972 16 7 9.7725 -0.3035 5.4374 17 14 10.1986 0.7960 2.9294 18 1 10.0990 2.2744 3.0270 19 1 11.6198 0.3859 3.0602 20 1 9.6740 0.3503 1.6136 21 6 6.0565 -0.1836 2.3254 22 1 5.2362 -0.4506 2.9917 23 6 6.5407 -1.4224 1.5691 24 6 6.9641 -2.4984 2.5710 25 7 1.6523 2.0975 -1.2518 26 6 0.8027 3.2914 -1.3332 27 6 1.0292 3.8601 -2.7535 28 6 1.4528 2.5942 -3.5338 29 6 2.0245 1.6788 -2.4737 30 8 2.7174 0.7082 -2.6942 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0278 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5137 0.8900 36 1 3.5860 0.4917 1.9001 37 1 6.2521 2.9813 1.2218 38 1 5.3850 2.5585 2.7359 39 1 8.2156 1.7533 1.8677 40 1 7.6869 2.4164 3.4432 41 1 10.7180 -0.1301 5.5673 42 1 5.7338 -1.8051 0.9443 43 1 7.3911 -1.1556 0.9415 44 1 7.1728 -3.4272 2.0402 45 1 7.8606 -2.1718 3.0979 46 1 6.1605 -2.6629 3.2889 47 1 -0.2439 3.0197 -1.1952 48 1 1.1056 4.0218 -0.5829 49 1 1.8248 4.6051 -2.7574 50 1 0.1056 4.2759 -3.1563 51 1 2.2125 2.8397 -4.2758 52 1 0.5893 2.1317 -4.0120 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264625812.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:55 Heat of formation + Delta-G solvation = -70.793411 kcal Electronic energy + Delta-G solvation = -31341.665968 eV Core-core repulsion = 27340.664018 eV Total energy + Delta-G solvation = -4001.001951 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.90044 -40.69997 -39.35712 -37.37792 -35.93389 -35.57873 -34.16376 -33.89746 -31.88624 -31.22403 -28.97452 -28.40190 -27.90616 -25.98795 -23.85458 -23.35647 -22.72213 -22.69476 -21.68202 -21.24460 -19.93014 -18.95400 -18.30259 -17.97059 -17.49095 -17.22876 -17.05204 -16.20436 -15.88305 -15.76286 -15.39024 -15.29631 -15.08251 -14.93908 -14.58262 -14.45664 -14.37333 -14.08521 -13.95046 -13.87805 -13.64639 -13.44943 -13.28551 -13.06772 -12.95687 -12.92682 -12.65807 -12.39657 -12.36430 -12.17361 -12.07501 -12.03271 -11.94134 -11.81842 -11.74849 -11.56677 -11.45477 -10.97034 -10.66392 -10.62700 -10.06391 -9.64333 -8.85627 -8.18912 -5.54119 1.27137 1.36019 1.44915 1.53630 1.61117 1.95566 2.29006 2.39923 3.07151 3.25906 3.46354 3.62915 3.66054 3.72982 3.75554 3.87612 3.99391 4.08483 4.10950 4.21182 4.22907 4.37538 4.38854 4.43028 4.51576 4.57381 4.64449 4.70098 4.71323 4.82387 4.84008 4.89830 4.90310 4.97072 5.04534 5.07562 5.10387 5.12086 5.17131 5.17883 5.26040 5.33888 5.37636 5.54959 5.61166 5.70827 5.85054 6.16782 6.21065 6.53264 6.78568 7.20319 7.32004 7.52602 8.15424 9.00894 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019883 B = 0.003006 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.888526 B = 9311.056807 C = 9810.457645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 C 0.146 3.854 4 H 0.154 0.846 5 C 0.498 3.502 6 O -0.569 6.569 7 N -0.702 5.702 8 C 0.150 3.850 9 H 0.067 0.933 10 C -0.123 4.123 11 C 0.111 3.889 12 N -0.612 5.612 13 C -0.204 4.204 14 H 0.067 0.933 15 C -0.018 4.018 16 N -0.950 5.950 17 Si 0.928 3.072 18 H -0.277 1.277 19 H -0.309 1.309 20 H -0.276 1.276 21 C 0.157 3.843 22 H 0.065 0.935 23 C -0.121 4.121 24 C -0.144 4.144 25 N -0.606 5.606 26 C 0.098 3.902 27 C -0.121 4.121 28 C -0.152 4.152 29 C 0.506 3.494 30 O -0.578 6.578 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.415 0.585 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.008 0.992 40 H 0.049 0.951 41 H 0.262 0.738 42 H 0.068 0.932 43 H 0.031 0.969 44 H 0.048 0.952 45 H 0.054 0.946 46 H 0.052 0.948 47 H 0.104 0.896 48 H 0.089 0.911 49 H 0.074 0.926 50 H 0.124 0.876 51 H 0.091 0.909 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.434 8.318 -13.075 31.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 C 0.039 3.961 4 H 0.171 0.829 5 C 0.284 3.716 6 O -0.447 6.447 7 N -0.355 5.355 8 C 0.043 3.957 9 H 0.085 0.915 10 C -0.162 4.162 11 C -0.014 4.014 12 N -0.339 5.339 13 C -0.333 4.333 14 H 0.084 0.916 15 C -0.214 4.214 16 N -0.596 5.596 17 Si 0.758 3.242 18 H -0.203 1.203 19 H -0.237 1.237 20 H -0.202 1.202 21 C 0.051 3.949 22 H 0.083 0.917 23 C -0.161 4.161 24 C -0.201 4.201 25 N -0.339 5.339 26 C -0.023 4.023 27 C -0.158 4.158 28 C -0.192 4.192 29 C 0.296 3.704 30 O -0.457 6.457 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.111 0.889 36 H 0.253 0.747 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.026 0.974 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.050 0.950 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.122 0.878 48 H 0.107 0.893 49 H 0.093 0.907 50 H 0.142 0.858 51 H 0.109 0.891 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -26.412 8.113 -13.592 30.792 hybrid contribution 1.669 -0.144 -0.217 1.689 sum -24.744 7.969 -13.809 29.435 Atomic orbital electron populations 1.21663 0.92380 1.02596 1.02821 1.21880 0.98856 0.93237 1.03235 1.21039 0.89056 0.96979 0.89000 0.82875 1.21598 0.92058 0.77113 0.80819 1.90696 1.66397 1.46498 1.41099 1.45776 1.06295 1.60066 1.23360 1.21650 0.80824 0.95260 0.97929 0.91481 1.22988 0.96581 0.96877 0.99773 1.21931 0.95923 0.87147 0.96378 1.44798 1.39592 1.10643 1.38821 1.18311 0.89868 1.22082 1.03019 0.91575 1.25788 0.97447 1.00192 0.97955 1.69874 1.12050 1.53259 1.24457 0.86118 0.77512 0.78729 0.81861 1.20341 1.23692 1.20194 1.21343 0.91215 0.91330 0.90995 0.91731 1.21844 0.99689 0.96704 0.97824 1.21778 1.02405 0.97116 0.98794 1.48123 1.50731 1.30553 1.04474 1.22496 0.95312 0.85373 0.99127 1.22652 1.04328 0.95582 0.93256 1.22360 1.03285 0.96524 0.97041 1.21599 0.78329 0.84642 0.85830 1.90679 1.39507 1.30864 1.84646 0.90065 0.92910 0.92111 0.93497 0.88915 0.74690 0.90969 0.89034 0.97405 0.93252 0.92907 0.91359 0.94973 0.93327 0.92679 0.92937 0.87798 0.89308 0.90683 0.85760 0.89097 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.80 71.98 0.71 -0.75 16 2 C -0.13 -2.23 5.30 30.60 0.16 -2.07 16 3 C 0.15 2.60 2.67 44.25 0.12 2.72 16 4 H 0.15 1.46 8.07 -2.39 -0.02 1.44 16 5 C 0.50 13.72 6.85 87.66 0.60 14.32 16 6 O -0.57 -21.51 14.62 10.95 0.16 -21.35 16 7 N -0.70 -17.87 5.07 -436.93 -2.21 -20.09 16 8 C 0.15 5.03 2.76 46.18 0.13 5.16 16 9 H 0.07 2.66 7.41 -2.39 -0.02 2.64 16 10 C -0.12 -4.17 6.77 31.99 0.22 -3.96 16 11 C 0.11 4.78 4.97 86.85 0.43 5.21 16 12 N -0.61 -28.12 2.71 -668.27 -1.81 -29.94 16 13 C -0.20 -11.03 7.35 84.03 0.62 -10.41 16 14 H 0.07 3.84 7.81 -2.91 -0.02 3.82 16 15 C -0.02 -1.04 5.46 84.86 0.46 -0.58 16 16 N -0.95 -58.67 13.97 21.65 0.30 -58.36 16 17 Si 0.93 47.95 24.63 68.60 1.69 49.64 16 18 H -0.28 -13.77 7.10 99.48 0.71 -13.06 16 19 H -0.31 -16.16 7.11 99.48 0.71 -15.45 16 20 H -0.28 -14.30 6.85 99.48 0.68 -13.62 16 21 C 0.16 5.83 3.02 45.34 0.14 5.97 16 22 H 0.07 2.19 7.69 -2.39 -0.02 2.17 16 23 C -0.12 -4.57 5.49 30.60 0.17 -4.40 16 24 C -0.14 -5.59 9.02 71.98 0.65 -4.94 16 25 N -0.61 -10.92 2.08 -797.84 -1.66 -12.58 16 26 C 0.10 0.80 7.31 86.90 0.64 1.44 16 27 C -0.12 -0.91 7.19 31.71 0.23 -0.68 16 28 C -0.15 -2.21 6.86 30.59 0.21 -2.00 16 29 C 0.51 12.66 6.68 87.90 0.59 13.24 16 30 O -0.58 -21.05 15.35 10.94 0.17 -20.88 16 31 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.05 0.59 7.75 -2.39 -0.02 0.57 16 33 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.05 1.18 6.62 -2.39 -0.02 1.17 16 35 H 0.09 1.27 7.43 -2.39 -0.02 1.25 16 36 H 0.42 7.73 7.67 -92.70 -0.71 7.02 16 37 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.01 0.38 5.32 -2.39 -0.01 0.37 16 40 H 0.05 2.19 7.98 -2.38 -0.02 2.18 16 41 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 42 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.03 1.34 8.14 -2.38 -0.02 1.33 16 44 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.05 2.61 5.59 -2.39 -0.01 2.60 16 46 H 0.05 1.89 8.13 -2.39 -0.02 1.87 16 47 H 0.10 0.27 8.14 -2.38 -0.02 0.25 16 48 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 51 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 52 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -82.77 398.60 2.86 -79.92 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.17 Total: 15.37 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 6.06 Total: 18.26 kcal Atomic # 7 Polarization: -115.58 SS G_CDS: -5.38 Total: -120.96 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: 0.33 Total: -42.23 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 1.69 Total: 49.64 kcal Total: -82.77 2.86 -79.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264625812.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.123 kcal (2) G-P(sol) polarization free energy of solvation -82.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds