Wall clock time and date at job start Tue Mar 31 2020 20:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50698 * 120.00140 * 2 1 4 4 H 1.09001 * 110.27464 * 0.64014 * 3 2 1 5 5 O 1.43646 * 110.30768 * 238.54843 * 3 2 1 6 6 C 1.43239 * 109.96870 * 216.65660 * 5 3 2 7 7 C 1.54381 * 107.58975 * 1.71154 * 6 5 3 8 8 C 1.54936 * 110.30866 * 122.83290 * 3 2 1 9 9 H 1.09005 * 111.13206 * 37.44312 * 8 3 2 10 10 C 1.50698 * 111.12986 * 273.27764 * 8 3 2 11 11 O 1.21280 * 119.99872 * 0.02562 * 10 8 3 12 12 N 1.34777 * 120.00214 * 180.02562 * 10 8 3 13 13 C 1.46502 * 119.99806 * 180.02562 * 12 10 8 14 14 C 1.53006 * 109.47015 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46932 * 179.97438 * 14 13 12 16 16 N 1.46905 * 109.46929 * 179.97438 * 15 14 13 17 17 C 1.46899 * 110.99903 * 294.30158 * 16 15 14 18 18 C 1.53233 * 109.33828 * 172.74826 * 17 16 15 19 19 N 1.47077 * 108.52609 * 53.83163 * 18 17 16 20 20 C 1.36929 * 120.88715 * 128.79293 * 19 18 17 21 21 H 1.07998 * 120.00106 * 206.59899 * 20 19 18 22 22 C 1.38810 * 120.00077 * 26.59216 * 20 19 18 23 23 N 1.31624 * 119.99721 * 17.01835 * 22 20 19 24 24 Si 1.86800 * 120.00353 * 197.01345 * 22 20 19 25 25 H 1.48503 * 109.47121 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47290 * 120.00031 * 24 22 20 27 27 H 1.48503 * 109.47321 * 240.00201 * 24 22 20 28 28 C 1.47082 * 118.23151 * 308.81405 * 19 18 17 29 29 C 1.46899 * 110.99958 * 169.99878 * 16 15 14 30 30 H 1.07997 * 120.00209 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.99387 * 359.71818 * 1 2 3 32 32 H 1.08005 * 119.99521 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.83038 * 121.22528 * 6 5 3 34 34 H 1.08997 * 109.82889 * 242.10923 * 6 5 3 35 35 H 1.08994 * 110.84924 * 139.54929 * 7 6 5 36 36 H 1.09001 * 110.85122 * 262.96643 * 7 6 5 37 37 H 0.96995 * 120.00239 * 359.97438 * 12 10 8 38 38 H 1.08998 * 109.46993 * 299.99783 * 13 12 10 39 39 H 1.09001 * 109.47637 * 59.99607 * 13 12 10 40 40 H 1.08998 * 109.47014 * 299.99710 * 14 13 12 41 41 H 1.08997 * 109.47025 * 59.99753 * 14 13 12 42 42 H 1.08998 * 109.47146 * 299.99766 * 15 14 13 43 43 H 1.09001 * 109.47566 * 59.99642 * 15 14 13 44 44 H 1.09005 * 109.49043 * 292.70575 * 17 16 15 45 45 H 1.08998 * 109.49170 * 52.78237 * 17 16 15 46 46 H 1.09003 * 109.62907 * 294.11462 * 18 17 16 47 47 H 1.09004 * 109.62961 * 173.53722 * 18 17 16 48 48 H 0.97004 * 119.99659 * 179.97438 * 23 22 20 49 49 H 1.09001 * 109.63036 * 291.47188 * 28 19 18 50 50 H 1.09002 * 109.63043 * 170.89375 * 28 19 18 51 51 H 1.08997 * 109.49473 * 307.21123 * 29 16 15 52 52 H 1.08999 * 109.49167 * 67.29205 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3671 2.1434 0.0114 5 8 2.9216 1.3853 -1.1492 6 6 4.1447 2.0448 -0.8015 7 6 4.0825 2.3795 0.7043 8 6 3.0148 1.3768 1.2209 9 1 3.4588 0.4037 1.4309 10 6 2.3025 1.9188 2.4333 11 8 1.1326 2.2302 2.3605 12 7 2.9655 2.0574 3.5986 13 6 2.2728 2.5837 4.7773 14 6 3.2450 2.6396 5.9575 15 6 2.5217 3.1899 7.1883 16 7 3.4550 3.2430 8.3216 17 6 3.8698 1.8929 8.7256 18 6 4.9742 1.9966 9.7828 19 7 4.4941 2.8533 10.8777 20 6 4.5652 2.4358 12.1798 21 1 3.8681 2.8210 12.9093 22 6 5.5332 1.5173 12.5623 23 7 6.5756 1.2992 11.7888 24 14 5.3565 0.5909 14.1748 25 1 4.1061 1.0147 14.8547 26 1 5.3033 -0.8682 13.9042 27 1 6.5199 0.8903 15.0478 28 6 3.9352 4.1703 10.5367 29 6 2.8717 3.9812 9.4498 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5399 0.9353 0.0046 32 1 1.8500 -0.9354 0.0004 33 1 4.9896 1.3851 -0.9990 34 1 4.2482 2.9618 -1.3815 35 1 5.0458 2.2005 1.1816 36 1 3.7597 3.4089 0.8600 37 1 3.9010 1.8079 3.6569 38 1 1.9031 3.5866 4.5638 39 1 1.4346 1.9331 5.0270 40 1 3.6150 1.6369 6.1712 41 1 4.0828 3.2905 5.7075 42 1 2.1520 4.1927 6.9744 43 1 1.6836 2.5394 7.4384 44 1 3.0157 1.3596 9.1429 45 1 4.2471 1.3532 7.8570 46 1 5.8668 2.4365 9.3380 47 1 5.2055 1.0039 10.1693 48 1 7.2522 0.6576 12.0563 49 1 4.7279 4.8193 10.1643 50 1 3.4794 4.6149 11.4214 51 1 2.5251 4.9559 9.1064 52 1 2.0314 3.4188 9.8570 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265249632.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:32 Heat of formation + Delta-G solvation = -33.062964 kcal Electronic energy + Delta-G solvation = -29044.569179 eV Core-core repulsion = 25045.203343 eV Total energy + Delta-G solvation = -3999.365836 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.82565 -38.99879 -38.26439 -35.89553 -34.46469 -34.13844 -32.98141 -31.90540 -30.45765 -29.95425 -28.97875 -26.96266 -24.95827 -23.51275 -22.88672 -22.71107 -22.30675 -21.21236 -20.37859 -20.22281 -19.12152 -17.92866 -16.96594 -16.76361 -16.27981 -16.03654 -15.88270 -15.33157 -15.03382 -14.67968 -14.41652 -14.31752 -14.15937 -13.91711 -13.74424 -13.61138 -13.44257 -13.07620 -13.04372 -12.76130 -12.39150 -12.11396 -12.01544 -11.86721 -11.61173 -11.52382 -11.35387 -11.32829 -11.07684 -10.91818 -10.76135 -10.42383 -10.31203 -10.18141 -10.05814 -10.01202 -9.76115 -9.70071 -9.60184 -9.34941 -8.53387 -7.86083 -6.68860 -5.80529 -3.21349 1.85102 2.27181 2.77346 3.35078 3.43117 3.45244 3.54613 3.91221 4.15433 4.25132 4.28338 4.48348 4.61507 4.65974 4.71012 4.86536 4.88161 4.96017 5.03217 5.13751 5.23215 5.27743 5.36273 5.40692 5.41531 5.45170 5.52203 5.57670 5.63914 5.67735 5.86444 5.91696 6.00466 6.09926 6.13471 6.19240 6.22064 6.26988 6.32495 6.40642 6.52394 6.58362 6.66772 6.90796 7.15964 7.22430 7.57360 7.61321 7.68263 7.79970 7.88004 8.41267 9.19230 9.82624 10.41041 11.28361 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021111 B = 0.001745 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.031682 B =16043.527567 C =16223.162763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.163 4.163 3 C 0.130 3.870 4 H 0.089 0.911 5 O -0.374 6.374 6 C 0.052 3.948 7 C -0.146 4.146 8 C -0.141 4.141 9 H 0.114 0.886 10 C 0.526 3.474 11 O -0.534 6.534 12 N -0.725 5.725 13 C 0.120 3.880 14 C -0.128 4.128 15 C 0.059 3.941 16 N -0.533 5.533 17 C 0.033 3.967 18 C 0.178 3.822 19 N -0.596 5.596 20 C -0.250 4.250 21 H 0.066 0.934 22 C 0.000 4.000 23 N -0.904 5.904 24 Si 0.902 3.098 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.290 1.290 28 C 0.148 3.852 29 C 0.045 3.955 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.402 0.598 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.029 0.971 44 H 0.024 0.976 45 H 0.062 0.938 46 H 0.026 0.974 47 H 0.088 0.912 48 H 0.253 0.747 49 H 0.025 0.975 50 H 0.055 0.945 51 H 0.061 0.939 52 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.389 0.473 -24.067 24.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.182 4.182 3 C 0.073 3.927 4 H 0.107 0.893 5 O -0.294 6.294 6 C -0.025 4.025 7 C -0.183 4.183 8 C -0.163 4.163 9 H 0.132 0.868 10 C 0.311 3.689 11 O -0.411 6.411 12 N -0.376 5.376 13 C -0.003 4.003 14 C -0.166 4.166 15 C -0.071 4.071 16 N -0.258 5.258 17 C -0.096 4.096 18 C 0.052 3.948 19 N -0.319 5.319 20 C -0.380 4.380 21 H 0.084 0.916 22 C -0.199 4.199 23 N -0.548 5.548 24 Si 0.732 3.268 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.217 1.217 28 C 0.022 3.978 29 C -0.085 4.085 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.131 0.869 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.237 0.763 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.047 0.953 44 H 0.042 0.958 45 H 0.080 0.920 46 H 0.044 0.956 47 H 0.106 0.894 48 H 0.063 0.937 49 H 0.043 0.957 50 H 0.074 0.926 51 H 0.080 0.920 52 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -6.738 0.782 -24.386 25.312 hybrid contribution -0.120 -1.066 1.403 1.766 sum -6.859 -0.284 -22.983 23.986 Atomic orbital electron populations 1.23930 0.95782 1.02335 0.97213 1.22735 0.95939 0.97081 1.02398 1.21844 0.91290 0.96989 0.82624 0.89281 1.88486 1.28195 1.79713 1.33005 1.23121 0.87716 0.97550 0.94100 1.23136 0.99279 0.99740 0.96191 1.23023 0.97396 1.01408 0.94468 0.86752 1.20058 0.86995 0.77990 0.83825 1.90718 1.16122 1.49701 1.84528 1.46014 1.15040 1.66208 1.10385 1.21374 0.95512 0.99444 0.84010 1.21798 0.98670 1.02718 0.93409 1.21937 0.93721 1.00222 0.91175 1.61954 1.39254 1.17750 1.06839 1.22956 0.99726 0.87932 0.99026 1.20860 0.91229 0.97210 0.85522 1.44130 1.72280 1.12577 1.02933 1.19239 1.10315 1.22609 0.85819 0.91605 1.25027 0.94890 1.01996 0.97942 1.70043 1.09697 1.36731 1.38375 0.86225 0.77473 0.79757 0.83344 1.20316 1.21588 1.21712 1.20982 0.93706 0.88892 0.94251 1.22612 0.97201 0.96605 0.92051 0.87943 0.88033 0.86944 0.90782 0.90889 0.88849 0.89778 0.76336 0.91354 0.91489 0.90977 0.90360 0.91193 0.95326 0.95769 0.92017 0.95634 0.89411 0.93699 0.95662 0.92618 0.92023 0.95438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 14.33 29.01 0.42 -0.92 16 2 C -0.16 -1.47 9.20 -36.03 -0.33 -1.80 16 3 C 0.13 1.21 2.94 -26.86 -0.08 1.13 16 4 H 0.09 0.96 7.07 -51.93 -0.37 0.59 16 5 O -0.37 -3.60 11.03 -35.23 -0.39 -3.99 16 6 C 0.05 0.33 7.79 37.88 0.30 0.63 16 7 C -0.15 -0.83 6.49 -24.78 -0.16 -0.99 16 8 C -0.14 -1.07 2.89 -89.53 -0.26 -1.33 16 9 H 0.11 0.70 8.05 -51.93 -0.42 0.28 16 10 C 0.53 5.23 7.16 -10.99 -0.08 5.16 16 11 O -0.53 -7.26 15.72 5.56 0.09 -7.17 16 12 N -0.72 -6.16 5.56 -60.29 -0.33 -6.49 16 13 C 0.12 1.18 5.67 -4.04 -0.02 1.16 16 14 C -0.13 -1.35 5.26 -26.73 -0.14 -1.49 16 15 C 0.06 0.76 4.96 -3.82 -0.02 0.74 16 16 N -0.53 -9.04 4.63 -234.32 -1.08 -10.13 16 17 C 0.03 0.61 5.46 -3.70 -0.02 0.59 16 18 C 0.18 4.22 5.42 -3.61 -0.02 4.20 16 19 N -0.60 -15.00 3.04 -172.02 -0.52 -15.52 16 20 C -0.25 -6.86 9.63 -15.06 -0.15 -7.01 16 21 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 22 C 0.00 -0.01 4.93 -17.43 -0.09 -0.09 16 23 N -0.90 -26.02 11.15 55.49 0.62 -25.40 16 24 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 C 0.15 3.13 6.69 -3.60 -0.02 3.10 16 29 C 0.04 0.79 5.62 -3.70 -0.02 0.77 16 30 H 0.10 0.71 8.06 -52.49 -0.42 0.28 16 31 H 0.10 0.91 7.86 -52.49 -0.41 0.50 16 32 H 0.11 0.88 8.06 -52.48 -0.42 0.45 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.52 8.03 -51.93 -0.42 0.10 16 37 H 0.40 2.48 8.47 -40.82 -0.35 2.14 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.79 6.40 -51.93 -0.33 0.46 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.84 7.97 -51.93 -0.41 0.43 16 43 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 1.02 6.16 -51.93 -0.32 0.70 16 46 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.09 2.31 6.12 -51.93 -0.32 1.99 16 48 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 49 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.06 1.13 7.95 -51.93 -0.41 0.72 16 51 H 0.06 0.93 7.99 -51.93 -0.41 0.51 16 52 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 410.40 15.07 6.18 6.18 Total: -1.00 -32.47 410.40 -10.38 -42.85 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -9.22 Total: -0.72 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -0.70 Total: 3.85 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: -1.32 Total: -57.54 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -0.30 Total: -11.17 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.47 -10.38 -42.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265249632.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.792 kcal (2) G-P(sol) polarization free energy of solvation -32.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds