Wall clock time and date at job start Tue Mar 31 2020 20:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50698 * 120.00140 * 2 1 4 4 H 1.09001 * 110.27464 * 0.64014 * 3 2 1 5 5 O 1.43646 * 110.30768 * 238.54843 * 3 2 1 6 6 C 1.43239 * 109.96870 * 216.65660 * 5 3 2 7 7 C 1.54381 * 107.58975 * 1.71154 * 6 5 3 8 8 C 1.54936 * 110.30866 * 122.83290 * 3 2 1 9 9 H 1.09005 * 111.13206 * 37.44312 * 8 3 2 10 10 C 1.50698 * 111.12986 * 273.27764 * 8 3 2 11 11 O 1.21280 * 119.99872 * 0.02562 * 10 8 3 12 12 N 1.34777 * 120.00214 * 180.02562 * 10 8 3 13 13 C 1.46502 * 119.99806 * 180.02562 * 12 10 8 14 14 C 1.53006 * 109.47015 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46932 * 179.97438 * 14 13 12 16 16 N 1.46905 * 109.46929 * 179.97438 * 15 14 13 17 17 C 1.46899 * 110.99903 * 294.30158 * 16 15 14 18 18 C 1.53233 * 109.33828 * 172.74826 * 17 16 15 19 19 N 1.47077 * 108.52609 * 53.83163 * 18 17 16 20 20 C 1.36929 * 120.88715 * 128.79293 * 19 18 17 21 21 H 1.07998 * 120.00106 * 206.59899 * 20 19 18 22 22 C 1.38810 * 120.00077 * 26.59216 * 20 19 18 23 23 N 1.31624 * 119.99721 * 17.01835 * 22 20 19 24 24 Si 1.86800 * 120.00353 * 197.01345 * 22 20 19 25 25 H 1.48503 * 109.47121 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47290 * 120.00031 * 24 22 20 27 27 H 1.48503 * 109.47321 * 240.00201 * 24 22 20 28 28 C 1.47082 * 118.23151 * 308.81405 * 19 18 17 29 29 C 1.46899 * 110.99958 * 169.99878 * 16 15 14 30 30 H 1.07997 * 120.00209 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.99387 * 359.71818 * 1 2 3 32 32 H 1.08005 * 119.99521 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.83038 * 121.22528 * 6 5 3 34 34 H 1.08997 * 109.82889 * 242.10923 * 6 5 3 35 35 H 1.08994 * 110.84924 * 139.54929 * 7 6 5 36 36 H 1.09001 * 110.85122 * 262.96643 * 7 6 5 37 37 H 0.96995 * 120.00239 * 359.97438 * 12 10 8 38 38 H 1.08998 * 109.46993 * 299.99783 * 13 12 10 39 39 H 1.09001 * 109.47637 * 59.99607 * 13 12 10 40 40 H 1.08998 * 109.47014 * 299.99710 * 14 13 12 41 41 H 1.08997 * 109.47025 * 59.99753 * 14 13 12 42 42 H 1.08998 * 109.47146 * 299.99766 * 15 14 13 43 43 H 1.09001 * 109.47566 * 59.99642 * 15 14 13 44 44 H 1.09005 * 109.49043 * 292.70575 * 17 16 15 45 45 H 1.08998 * 109.49170 * 52.78237 * 17 16 15 46 46 H 1.09003 * 109.62907 * 294.11462 * 18 17 16 47 47 H 1.09004 * 109.62961 * 173.53722 * 18 17 16 48 48 H 0.97004 * 119.99659 * 179.97438 * 23 22 20 49 49 H 1.09001 * 109.63036 * 291.47188 * 28 19 18 50 50 H 1.09002 * 109.63043 * 170.89375 * 28 19 18 51 51 H 1.08997 * 109.49473 * 307.21123 * 29 16 15 52 52 H 1.08999 * 109.49167 * 67.29205 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3671 2.1434 0.0114 5 8 2.9216 1.3853 -1.1492 6 6 4.1447 2.0448 -0.8015 7 6 4.0825 2.3795 0.7043 8 6 3.0148 1.3768 1.2209 9 1 3.4588 0.4037 1.4309 10 6 2.3025 1.9188 2.4333 11 8 1.1326 2.2302 2.3605 12 7 2.9655 2.0574 3.5986 13 6 2.2728 2.5837 4.7773 14 6 3.2450 2.6396 5.9575 15 6 2.5217 3.1899 7.1883 16 7 3.4550 3.2430 8.3216 17 6 3.8698 1.8929 8.7256 18 6 4.9742 1.9966 9.7828 19 7 4.4941 2.8533 10.8777 20 6 4.5652 2.4358 12.1798 21 1 3.8681 2.8210 12.9093 22 6 5.5332 1.5173 12.5623 23 7 6.5756 1.2992 11.7888 24 14 5.3565 0.5909 14.1748 25 1 4.1061 1.0147 14.8547 26 1 5.3033 -0.8682 13.9042 27 1 6.5199 0.8903 15.0478 28 6 3.9352 4.1703 10.5367 29 6 2.8717 3.9812 9.4498 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5399 0.9353 0.0046 32 1 1.8500 -0.9354 0.0004 33 1 4.9896 1.3851 -0.9990 34 1 4.2482 2.9618 -1.3815 35 1 5.0458 2.2005 1.1816 36 1 3.7597 3.4089 0.8600 37 1 3.9010 1.8079 3.6569 38 1 1.9031 3.5866 4.5638 39 1 1.4346 1.9331 5.0270 40 1 3.6150 1.6369 6.1712 41 1 4.0828 3.2905 5.7075 42 1 2.1520 4.1927 6.9744 43 1 1.6836 2.5394 7.4384 44 1 3.0157 1.3596 9.1429 45 1 4.2471 1.3532 7.8570 46 1 5.8668 2.4365 9.3380 47 1 5.2055 1.0039 10.1693 48 1 7.2522 0.6576 12.0563 49 1 4.7279 4.8193 10.1643 50 1 3.4794 4.6149 11.4214 51 1 2.5251 4.9559 9.1064 52 1 2.0314 3.4188 9.8570 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265249632.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:31 Heat of formation + Delta-G solvation = -55.752266 kcal Electronic energy + Delta-G solvation = -29045.553061 eV Core-core repulsion = 25045.203343 eV Total energy + Delta-G solvation = -4000.349718 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.52077 -39.90193 -39.54660 -37.05522 -35.84987 -34.80963 -33.89269 -33.27360 -31.77221 -31.62983 -29.59793 -28.47672 -26.24059 -24.78590 -24.29865 -23.66499 -23.20421 -22.21882 -21.13200 -20.95460 -20.79703 -18.74421 -18.60496 -17.54316 -17.18736 -16.94350 -16.72123 -16.63335 -16.19380 -15.87439 -15.63446 -15.38906 -15.27436 -15.21840 -14.90571 -14.82262 -14.61013 -14.37633 -14.24464 -13.49241 -13.39375 -13.32464 -12.97170 -12.85276 -12.83401 -12.64910 -12.54406 -12.53686 -12.28320 -12.07639 -12.05873 -11.95053 -11.91071 -11.77233 -11.48587 -11.31226 -10.95344 -10.64806 -10.59717 -10.35261 -10.13252 -9.26153 -8.67982 -7.88369 -5.32479 1.19394 1.45186 1.47042 1.52322 1.57488 2.04475 2.50060 2.93551 3.02713 3.27004 3.36790 3.54572 3.68925 3.70592 3.95531 4.01059 4.06958 4.12840 4.18276 4.22522 4.25088 4.35272 4.38701 4.41250 4.48676 4.62476 4.65001 4.67822 4.70364 4.74904 4.81110 4.83675 4.84348 4.89782 4.99554 5.03924 5.06083 5.15825 5.21751 5.26362 5.38515 5.41652 5.59723 5.61089 5.69452 5.77177 5.98659 6.19047 6.29220 6.37646 6.48741 7.13376 7.16804 7.84098 8.37786 9.18468 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021111 B = 0.001745 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.031682 B =16043.527567 C =16223.162763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.172 4.172 3 C 0.127 3.873 4 H 0.066 0.934 5 O -0.395 6.395 6 C 0.044 3.956 7 C -0.138 4.138 8 C -0.134 4.134 9 H 0.135 0.865 10 C 0.525 3.475 11 O -0.576 6.576 12 N -0.714 5.714 13 C 0.129 3.871 14 C -0.114 4.114 15 C 0.059 3.941 16 N -0.540 5.540 17 C 0.050 3.950 18 C 0.184 3.816 19 N -0.616 5.616 20 C -0.263 4.263 21 H 0.066 0.934 22 C -0.052 4.052 23 N -0.934 5.934 24 Si 0.967 3.033 25 H -0.268 1.268 26 H -0.289 1.289 27 H -0.292 1.292 28 C 0.143 3.857 29 C 0.054 3.946 30 H 0.119 0.881 31 H 0.090 0.910 32 H 0.126 0.874 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.121 0.879 36 H 0.077 0.923 37 H 0.416 0.584 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.029 0.971 44 H 0.014 0.986 45 H 0.087 0.913 46 H 0.000 1.000 47 H 0.055 0.945 48 H 0.250 0.750 49 H 0.018 0.982 50 H 0.058 0.942 51 H 0.095 0.905 52 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.442 0.368 -24.844 25.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.191 4.191 3 C 0.069 3.931 4 H 0.083 0.917 5 O -0.315 6.315 6 C -0.032 4.032 7 C -0.175 4.175 8 C -0.156 4.156 9 H 0.153 0.847 10 C 0.312 3.688 11 O -0.455 6.455 12 N -0.366 5.366 13 C 0.005 3.995 14 C -0.152 4.152 15 C -0.069 4.069 16 N -0.265 5.265 17 C -0.079 4.079 18 C 0.058 3.942 19 N -0.340 5.340 20 C -0.393 4.393 21 H 0.083 0.917 22 C -0.248 4.248 23 N -0.580 5.580 24 Si 0.796 3.204 25 H -0.193 1.193 26 H -0.215 1.215 27 H -0.219 1.219 28 C 0.017 3.983 29 C -0.075 4.075 30 H 0.137 0.863 31 H 0.109 0.891 32 H 0.144 0.856 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.140 0.860 36 H 0.096 0.904 37 H 0.253 0.747 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.047 0.953 44 H 0.032 0.968 45 H 0.106 0.894 46 H 0.018 0.982 47 H 0.074 0.926 48 H 0.060 0.940 49 H 0.036 0.964 50 H 0.077 0.923 51 H 0.113 0.887 52 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -6.784 0.696 -25.175 26.082 hybrid contribution -0.100 -0.943 1.606 1.865 sum -6.884 -0.247 -23.569 24.555 Atomic orbital electron populations 1.24059 0.95992 1.02662 0.97254 1.22928 0.96181 0.97529 1.02412 1.21765 0.91460 0.96328 0.83547 0.91662 1.88463 1.29358 1.80147 1.33526 1.23347 0.87035 0.98140 0.94682 1.23156 0.99868 0.98787 0.95726 1.22996 0.97232 1.02782 0.92564 0.84739 1.20446 0.86539 0.77274 0.84568 1.90706 1.18028 1.51581 1.85193 1.45900 1.15637 1.65462 1.09608 1.21183 0.95064 0.99164 0.84130 1.21641 0.98557 1.02522 0.92506 1.22026 0.93105 1.01543 0.90250 1.61902 1.40831 1.16263 1.07467 1.22627 0.97578 0.89410 0.98330 1.20640 0.92186 0.95011 0.86318 1.44427 1.72553 1.14403 1.02624 1.19550 1.10065 1.22682 0.86999 0.91651 1.25781 0.94717 1.02995 1.01262 1.70190 1.10407 1.37349 1.40099 0.85209 0.77477 0.78183 0.79577 1.19293 1.21534 1.21874 1.21137 0.94317 0.87021 0.95780 1.22461 0.95351 0.98347 0.91317 0.86296 0.89123 0.85576 0.89020 0.90296 0.86035 0.90410 0.74684 0.91618 0.92478 0.91096 0.89820 0.89488 0.95303 0.96777 0.89441 0.98155 0.92639 0.94041 0.96445 0.92325 0.88682 0.96097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 14.33 67.77 0.97 -1.82 16 2 C -0.17 -2.99 9.20 25.64 0.24 -2.76 16 3 C 0.13 2.30 2.94 30.51 0.09 2.39 16 4 H 0.07 1.47 7.07 -2.39 -0.02 1.45 16 5 O -0.39 -7.26 11.03 -148.98 -1.64 -8.90 16 6 C 0.04 0.48 7.79 72.45 0.56 1.04 16 7 C -0.14 -1.23 6.49 31.86 0.21 -1.03 16 8 C -0.13 -1.79 2.89 -10.09 -0.03 -1.82 16 9 H 0.13 1.26 8.05 -2.38 -0.02 1.24 16 10 C 0.53 9.73 7.16 87.66 0.63 10.35 16 11 O -0.58 -15.53 15.72 -3.03 -0.05 -15.57 16 12 N -0.71 -10.48 5.56 -463.05 -2.57 -13.06 16 13 C 0.13 2.25 5.67 86.38 0.49 2.74 16 14 C -0.11 -2.09 5.26 30.60 0.16 -1.93 16 15 C 0.06 1.37 4.96 86.30 0.43 1.80 16 16 N -0.54 -17.17 4.63 -895.26 -4.14 -21.31 16 17 C 0.05 1.82 5.46 86.38 0.47 2.29 16 18 C 0.18 8.88 5.42 86.35 0.47 9.35 16 19 N -0.62 -31.30 3.04 -698.14 -2.12 -33.42 16 20 C -0.26 -14.56 9.63 84.03 0.81 -13.75 16 21 H 0.07 3.54 7.88 -2.91 -0.02 3.52 16 22 C -0.05 -2.92 4.93 84.86 0.42 -2.50 16 23 N -0.93 -55.01 11.15 21.65 0.24 -54.77 16 24 Si 0.97 44.76 29.59 68.60 2.03 46.79 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 26 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 27 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 28 C 0.14 5.96 6.69 86.35 0.58 6.54 16 29 C 0.05 1.81 5.62 86.38 0.49 2.29 16 30 H 0.12 1.56 8.06 -2.91 -0.02 1.53 16 31 H 0.09 1.71 7.86 -2.91 -0.02 1.69 16 32 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 33 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.08 0.82 8.03 -2.39 -0.02 0.80 16 37 H 0.42 3.83 8.47 -92.71 -0.79 3.04 16 38 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.07 1.35 6.40 -2.39 -0.02 1.33 16 41 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.09 1.77 7.97 -2.39 -0.02 1.75 16 43 H 0.03 0.69 8.12 -2.39 -0.02 0.67 16 44 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 45 H 0.09 2.73 6.16 -2.39 -0.01 2.72 16 46 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 47 H 0.06 3.01 6.12 -2.38 -0.01 2.99 16 48 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 49 H 0.02 0.75 8.14 -2.39 -0.02 0.74 16 50 H 0.06 2.35 7.95 -2.39 -0.02 2.33 16 51 H 0.09 2.54 7.99 -2.39 -0.02 2.52 16 52 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -72.00 410.40 -1.18 -73.18 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.10 Total: 13.88 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 6.98 Total: 13.19 kcal Atomic # 7 Polarization: -113.97 SS G_CDS: -8.60 Total: -122.57 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -1.69 Total: -24.48 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -72.00 -1.18 -73.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265249632.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.426 kcal (2) G-P(sol) polarization free energy of solvation -71.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds