Wall clock time and date at job start Tue Mar 31 2020 20:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47298 * 2 1 4 4 H 1.09003 * 110.02212 * 306.39830 * 3 2 1 5 5 C 1.54267 * 110.07205 * 67.81386 * 3 2 1 6 6 C 1.54888 * 104.19861 * 142.91554 * 5 3 2 7 7 C 1.54891 * 102.74815 * 322.05788 * 6 5 3 8 8 C 1.53878 * 110.03623 * 185.00312 * 3 2 1 9 9 H 1.09005 * 110.02686 * 0.02562 * 8 3 2 10 10 C 1.50698 * 110.03590 * 121.38241 * 8 3 2 11 11 O 1.21288 * 119.99853 * 0.02562 * 10 8 3 12 12 N 1.34768 * 120.00007 * 180.02562 * 10 8 3 13 13 C 1.46505 * 119.99907 * 180.02562 * 12 10 8 14 14 H 1.09001 * 112.84989 * 336.19444 * 13 12 10 15 15 C 1.53780 * 113.61384 * 107.50153 * 13 12 10 16 16 C 1.53787 * 87.07913 * 139.97932 * 15 13 12 17 17 H 1.09004 * 113.68704 * 89.12314 * 16 15 13 18 18 N 1.46901 * 113.61352 * 220.01789 * 16 15 13 19 19 C 1.46898 * 110.99614 * 252.49690 * 18 16 15 20 20 C 1.50706 * 109.46984 * 180.02562 * 19 18 16 21 21 O 1.21295 * 119.99863 * 359.97438 * 20 19 18 22 22 N 1.34773 * 120.00080 * 180.02562 * 20 19 18 23 23 C 1.37105 * 119.99873 * 180.02562 * 22 20 19 24 24 H 1.08000 * 119.99509 * 359.71860 * 23 22 20 25 25 C 1.38950 * 120.00048 * 179.72298 * 23 22 20 26 26 N 1.31413 * 119.99930 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 119.99918 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47151 * 359.97438 * 27 25 23 29 29 H 1.48503 * 109.47086 * 119.99941 * 27 25 23 30 30 H 1.48500 * 109.46879 * 239.99997 * 27 25 23 31 31 C 1.53777 * 113.61186 * 205.00204 * 13 12 10 32 32 H 1.09003 * 109.46667 * 300.00078 * 1 2 3 33 33 H 1.09005 * 109.47084 * 59.99620 * 1 2 3 34 34 H 1.08997 * 109.47450 * 179.97438 * 1 2 3 35 35 H 1.09004 * 109.46612 * 240.00471 * 2 1 3 36 36 H 1.08994 * 109.47456 * 120.00666 * 2 1 3 37 37 H 1.09004 * 110.48786 * 261.59506 * 5 3 2 38 38 H 1.09002 * 110.48638 * 24.10375 * 5 3 2 39 39 H 1.09002 * 110.75265 * 80.37291 * 6 5 3 40 40 H 1.09000 * 110.75455 * 203.55343 * 6 5 3 41 41 H 1.08999 * 110.48177 * 279.26628 * 7 6 5 42 42 H 1.09002 * 110.48381 * 156.61553 * 7 6 5 43 43 H 0.97001 * 120.00152 * 0.02562 * 12 10 8 44 44 H 1.09000 * 113.61221 * 25.43518 * 15 13 12 45 45 H 1.08994 * 113.61751 * 254.52733 * 15 13 12 46 46 H 1.00897 * 110.99725 * 128.54870 * 18 16 15 47 47 H 1.09004 * 109.47320 * 60.00702 * 19 18 16 48 48 H 1.09001 * 109.47291 * 299.99999 * 19 18 16 49 49 H 0.96996 * 119.99858 * 359.72084 * 22 20 19 50 50 H 0.96999 * 119.99993 * 179.97438 * 26 25 23 51 51 H 1.09000 * 113.61671 * 105.47507 * 31 13 12 52 52 H 1.09002 * 113.61976 * 334.56151 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5915 1.9969 -0.8243 5 6 1.7007 2.1240 1.3417 6 6 2.9290 3.0213 1.6333 7 6 4.1125 2.1505 1.1434 8 6 3.5736 1.4594 -0.1261 9 1 3.9543 0.4399 -0.1877 10 6 3.9824 2.2371 -1.3504 11 8 3.1366 2.7358 -2.0624 12 7 5.2878 2.3785 -1.6541 13 6 5.6852 3.1351 -2.8441 14 1 4.9015 3.1766 -3.6005 15 6 6.3083 4.5040 -2.5240 16 6 7.3117 4.2238 -3.6552 17 1 6.9742 4.5641 -4.6342 18 7 8.6828 4.6499 -3.3445 19 6 9.0500 5.8453 -4.1153 20 6 10.4599 6.2513 -3.7713 21 8 11.0961 5.6084 -2.9631 22 7 11.0136 7.3294 -4.3609 23 6 12.2965 7.6985 -4.0483 24 1 12.8617 7.1279 -3.3263 25 6 12.8694 8.8065 -4.6605 26 7 12.1817 9.5005 -5.5394 27 14 14.6170 9.3098 -4.2340 28 1 15.1696 8.3720 -3.2238 29 1 15.4563 9.2700 -5.4585 30 1 14.6142 10.6877 -3.6803 31 6 7.0591 2.7281 -3.4023 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 1.8933 -0.5138 -0.8901 36 1 1.8934 -0.5139 0.8899 37 1 0.7999 2.7301 1.2446 38 1 1.5751 1.3787 2.1272 39 1 2.8721 3.9503 1.0660 40 1 3.0125 3.2268 2.7005 41 1 4.3786 1.4097 1.8974 42 1 4.9718 2.7760 0.9016 43 1 5.9642 1.9793 -1.0849 44 1 6.7667 4.5549 -1.5364 45 1 5.6444 5.3442 -2.7274 46 1 9.3393 3.9006 -3.5047 47 1 8.3673 6.6591 -3.8709 48 1 8.9855 5.6245 -5.1808 49 1 10.5060 7.8415 -5.0097 50 1 12.5814 10.2742 -5.9664 51 1 7.0013 2.1347 -4.3148 52 1 7.7229 2.2936 -2.6548 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265556142.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:17 Heat of formation + Delta-G solvation = -101.326744 kcal Electronic energy + Delta-G solvation = -28634.473125 eV Core-core repulsion = 24632.147150 eV Total energy + Delta-G solvation = -4002.325975 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.52926 -40.37313 -39.74183 -38.28611 -36.13560 -35.46532 -34.18495 -33.49935 -33.18415 -30.26390 -28.48127 -28.36766 -26.69977 -26.14950 -24.67885 -23.38752 -22.33666 -21.32416 -21.16007 -20.75947 -20.10283 -19.87764 -17.99907 -17.97211 -17.35008 -16.87055 -16.59673 -16.45416 -16.27632 -16.05495 -15.76261 -15.34947 -15.26378 -15.05660 -14.85909 -14.35636 -14.22370 -14.05042 -13.70955 -13.52168 -13.37998 -13.25932 -13.14015 -12.88709 -12.83291 -12.51697 -12.41427 -12.24770 -12.12574 -12.06746 -11.94703 -11.90744 -11.78069 -11.61948 -11.54344 -11.50763 -11.34549 -11.26447 -10.66995 -10.33716 -10.02111 -9.99925 -9.32870 -8.47184 -5.96147 1.36653 1.41993 1.56308 1.64385 2.04542 2.20102 2.30009 2.98303 3.20211 3.47938 3.52024 3.55408 3.63355 3.69520 3.78153 3.95366 4.01042 4.15907 4.25191 4.30356 4.30778 4.44434 4.45405 4.52884 4.54603 4.60136 4.72074 4.76310 4.78741 4.80817 4.82574 4.84383 4.95308 5.00689 5.01912 5.07633 5.13512 5.16787 5.23422 5.25548 5.30493 5.39714 5.40828 5.44392 5.56364 5.66311 5.92250 6.13857 6.42927 6.59167 6.60288 7.12006 7.28681 7.55635 8.10503 8.70432 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.029899 B = 0.001586 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.270616 B =17649.818250 C =17972.152656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.088 4.088 4 H 0.065 0.935 5 C -0.113 4.113 6 C -0.130 4.130 7 C -0.111 4.111 8 C -0.108 4.108 9 H 0.121 0.879 10 C 0.516 3.484 11 O -0.584 6.584 12 N -0.707 5.707 13 C 0.128 3.872 14 H 0.103 0.897 15 C -0.137 4.137 16 C 0.058 3.942 17 H 0.085 0.915 18 N -0.665 5.665 19 C 0.064 3.936 20 C 0.438 3.562 21 O -0.622 6.622 22 N -0.574 5.574 23 C -0.334 4.334 24 H 0.080 0.920 25 C -0.013 4.013 26 N -0.921 5.921 27 Si 0.994 3.006 28 H -0.272 1.272 29 H -0.270 1.270 30 H -0.272 1.272 31 C -0.131 4.131 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.084 0.916 39 H 0.044 0.956 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.067 0.933 43 H 0.414 0.586 44 H 0.084 0.916 45 H 0.059 0.941 46 H 0.348 0.652 47 H 0.098 0.902 48 H 0.068 0.932 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.089 0.911 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.516 -19.114 10.352 30.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.107 4.107 4 H 0.084 0.916 5 C -0.150 4.150 6 C -0.168 4.168 7 C -0.149 4.149 8 C -0.129 4.129 9 H 0.139 0.861 10 C 0.304 3.696 11 O -0.464 6.464 12 N -0.357 5.357 13 C 0.022 3.978 14 H 0.121 0.879 15 C -0.177 4.177 16 C -0.052 4.052 17 H 0.103 0.897 18 N -0.298 5.298 19 C -0.069 4.069 20 C 0.226 3.774 21 O -0.509 6.509 22 N -0.211 5.211 23 C -0.464 4.464 24 H 0.098 0.902 25 C -0.213 4.213 26 N -0.562 5.562 27 Si 0.818 3.182 28 H -0.197 1.197 29 H -0.196 1.196 30 H -0.197 1.197 31 C -0.170 4.170 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.063 0.937 40 H 0.100 0.900 41 H 0.119 0.881 42 H 0.086 0.914 43 H 0.251 0.749 44 H 0.103 0.897 45 H 0.078 0.922 46 H 0.168 0.832 47 H 0.116 0.884 48 H 0.086 0.914 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.107 0.893 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -21.814 -18.670 10.815 30.682 hybrid contribution 1.025 0.579 -1.177 1.665 sum -20.789 -18.091 9.638 29.195 Atomic orbital electron populations 1.21774 0.95676 1.01884 1.01629 1.21610 0.96224 0.94840 1.02260 1.21818 0.92700 0.97373 0.98820 0.91641 1.22422 0.97598 0.98587 0.96439 1.22525 0.95061 0.97709 1.01471 1.22404 0.97823 0.99251 0.95386 1.22078 0.97764 1.00695 0.92340 0.86117 1.21160 0.82183 0.79502 0.86745 1.90648 1.51652 1.50715 1.53404 1.45902 1.07428 1.54689 1.27707 1.22180 0.95738 0.91705 0.88195 0.87945 1.23538 0.96988 0.97238 0.99928 1.22918 0.88248 0.96209 0.97835 0.89725 1.60187 1.03342 1.07330 1.58914 1.21595 0.92648 0.95659 0.96963 1.20876 0.89970 0.82478 0.84119 1.90484 1.65553 1.56295 1.38552 1.41953 1.14032 1.25932 1.39181 1.19727 0.90981 1.11697 1.23995 0.90225 1.26054 1.03905 0.95630 0.95698 1.69682 1.39289 1.19335 1.27872 0.84857 0.77001 0.78107 0.78279 1.19700 1.19555 1.19696 1.23520 0.95471 0.95387 1.02572 0.92150 0.93970 0.91983 0.92577 0.90297 0.92305 0.89731 0.93683 0.89961 0.88093 0.91422 0.74877 0.89722 0.92211 0.83213 0.88400 0.91422 0.77025 0.91314 0.89267 0.88031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.77 71.98 0.70 -1.02 16 2 C -0.11 -1.27 5.06 30.59 0.15 -1.12 16 3 C -0.09 -1.32 2.52 -10.07 -0.03 -1.34 16 4 H 0.07 1.45 6.39 -2.39 -0.02 1.43 16 5 C -0.11 -1.41 5.54 31.67 0.18 -1.24 16 6 C -0.13 -1.72 6.91 31.89 0.22 -1.50 16 7 C -0.11 -1.22 6.35 31.67 0.20 -1.02 16 8 C -0.11 -1.44 2.95 -10.81 -0.03 -1.47 16 9 H 0.12 1.08 7.67 -2.38 -0.02 1.06 16 10 C 0.52 10.37 7.07 87.66 0.62 10.99 16 11 O -0.58 -16.92 14.81 -3.05 -0.05 -16.97 16 12 N -0.71 -11.66 5.06 -440.04 -2.22 -13.89 16 13 C 0.13 2.43 4.24 45.51 0.19 2.63 16 14 H 0.10 2.25 7.46 -2.39 -0.02 2.23 16 15 C -0.14 -3.08 7.68 31.12 0.24 -2.84 16 16 C 0.06 1.30 4.14 45.44 0.19 1.48 16 17 H 0.08 1.76 7.87 -2.39 -0.02 1.74 16 18 N -0.67 -20.03 6.18 -492.82 -3.05 -23.08 16 19 C 0.06 2.18 6.01 85.56 0.51 2.69 16 20 C 0.44 20.81 7.82 87.66 0.69 21.49 16 21 O -0.62 -34.24 15.78 -3.08 -0.05 -34.29 16 22 N -0.57 -29.57 5.29 -306.97 -1.62 -31.20 16 23 C -0.33 -19.07 9.68 84.04 0.81 -18.25 16 24 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 25 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 26 N -0.92 -49.87 13.05 21.66 0.28 -49.58 16 27 Si 0.99 42.93 29.55 68.60 2.03 44.96 16 28 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 29 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 30 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 31 C -0.13 -2.21 7.40 31.12 0.23 -1.98 16 32 H 0.06 0.62 7.51 -2.39 -0.02 0.60 16 33 H 0.04 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.08 0.64 8.01 -2.39 -0.02 0.62 16 37 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.08 0.77 7.76 -2.39 -0.02 0.75 16 39 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.07 0.82 7.51 -2.39 -0.02 0.80 16 43 H 0.41 4.73 8.62 -92.71 -0.80 3.93 16 44 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 45 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 46 H 0.35 10.73 8.24 -89.70 -0.74 9.99 16 47 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 48 H 0.07 2.01 8.13 -2.39 -0.02 1.99 16 49 H 0.40 19.43 7.90 -92.71 -0.73 18.70 16 50 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 51 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 52 H 0.10 1.62 8.12 -2.39 -0.02 1.60 16 Total: -1.00 -72.07 415.90 -0.67 -72.74 By element: Atomic # 1 Polarization: 45.39 SS G_CDS: -1.34 Total: 44.05 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 5.35 Total: 7.25 kcal Atomic # 7 Polarization: -111.13 SS G_CDS: -6.61 Total: -117.74 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -0.09 Total: -51.26 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -72.07 -0.67 -72.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265556142.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.584 kcal (2) G-P(sol) polarization free energy of solvation -72.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds