Wall clock time and date at job start Tue Mar 31 2020 20:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47248 * 2 1 4 4 H 1.09004 * 110.05851 * 306.69903 * 3 2 1 5 5 C 1.54265 * 110.03559 * 68.11630 * 3 2 1 6 6 C 1.54890 * 104.19985 * 142.89165 * 5 3 2 7 7 C 1.54961 * 102.77831 * 322.08981 * 6 5 3 8 8 C 1.53885 * 110.03375 * 185.28240 * 3 2 1 9 9 H 1.08999 * 110.02593 * 121.38213 * 8 3 2 10 10 C 1.50694 * 110.03024 * 0.02562 * 8 3 2 11 11 O 1.21288 * 119.99646 * 273.69878 * 10 8 3 12 12 N 1.34774 * 120.00329 * 93.69652 * 10 8 3 13 13 C 1.46503 * 119.99875 * 180.02562 * 12 10 8 14 14 H 1.08998 * 112.85117 * 336.18834 * 13 12 10 15 15 C 1.53954 * 113.74626 * 107.40253 * 13 12 10 16 16 C 1.53782 * 87.01790 * 139.94045 * 15 13 12 17 17 H 1.09000 * 113.61279 * 89.23128 * 16 15 13 18 18 N 1.46906 * 113.61163 * 220.04891 * 16 15 13 19 19 C 1.46901 * 110.99743 * 254.14183 * 18 16 15 20 20 C 1.50695 * 109.47103 * 180.02562 * 19 18 16 21 21 O 1.21298 * 120.00008 * 359.97438 * 20 19 18 22 22 N 1.34776 * 120.00376 * 180.02562 * 20 19 18 23 23 C 1.37091 * 120.00297 * 179.97438 * 22 20 19 24 24 H 1.08001 * 120.00238 * 359.97438 * 23 22 20 25 25 C 1.38957 * 120.00024 * 179.97438 * 23 22 20 26 26 N 1.31409 * 119.99663 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99834 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.46595 * 179.97438 * 27 25 23 29 29 H 1.48498 * 109.47306 * 300.00105 * 27 25 23 30 30 H 1.48496 * 109.46978 * 60.00481 * 27 25 23 31 31 C 1.53779 * 87.17540 * 334.63906 * 16 15 13 32 32 H 1.08994 * 109.46499 * 60.00023 * 1 2 3 33 33 H 1.09000 * 109.46914 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46864 * 300.00151 * 1 2 3 35 35 H 1.09007 * 109.47212 * 239.99961 * 2 1 3 36 36 H 1.09007 * 109.47068 * 120.00154 * 2 1 3 37 37 H 1.08999 * 110.49151 * 261.57386 * 5 3 2 38 38 H 1.09007 * 110.48311 * 24.08706 * 5 3 2 39 39 H 1.08999 * 110.75443 * 80.37296 * 6 5 3 40 40 H 1.08999 * 110.75982 * 203.56159 * 6 5 3 41 41 H 1.09000 * 110.47692 * 279.22776 * 7 6 5 42 42 H 1.09001 * 110.53174 * 156.56208 * 7 6 5 43 43 H 0.97000 * 119.99714 * 359.97438 * 12 10 8 44 44 H 1.09000 * 113.60851 * 25.42057 * 15 13 12 45 45 H 1.08995 * 113.66531 * 254.47047 * 15 13 12 46 46 H 1.00904 * 110.99970 * 18.08966 * 18 16 15 47 47 H 1.08995 * 109.47478 * 59.99449 * 19 18 16 48 48 H 1.09002 * 109.47055 * 299.99692 * 19 18 16 49 49 H 0.97000 * 119.99657 * 359.97438 * 22 20 19 50 50 H 0.97000 * 120.00504 * 359.97438 * 26 25 23 51 51 H 1.08997 * 113.61192 * 139.93817 * 31 16 15 52 52 H 1.08997 * 113.61395 * 270.84053 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5878 1.9989 -0.8210 5 6 1.7069 2.1208 1.3449 6 6 2.9367 3.0173 1.6331 7 6 4.1188 2.1481 1.1349 8 6 3.5730 1.4595 -0.1331 9 1 3.8645 2.0235 -1.0191 10 6 4.0991 0.0503 -0.2230 11 8 4.3385 -0.5734 0.7893 12 7 4.3034 -0.5172 -1.4283 13 6 4.8143 -1.8875 -1.5156 14 1 5.3660 -2.1910 -0.6259 15 6 3.7597 -2.9148 -1.9655 16 6 4.8688 -3.5633 -2.8107 17 1 5.4358 -4.3255 -2.2762 18 7 4.4138 -4.0133 -4.1330 19 6 4.2923 -5.4766 -4.1781 20 6 3.8252 -5.9000 -5.5468 21 8 3.6137 -5.0649 -6.4007 22 7 3.6413 -7.2065 -5.8219 23 6 3.2158 -7.5916 -7.0670 24 1 3.0275 -6.8480 -7.8273 25 6 3.0268 -8.9387 -7.3507 26 7 3.2554 -9.8434 -6.4255 27 14 2.4464 -9.4633 -9.0470 28 1 2.3244 -10.9427 -9.0927 29 1 1.1248 -8.8482 -9.3302 30 1 3.4291 -9.0164 -10.0666 31 6 5.5536 -2.1866 -2.8305 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 1.8934 -0.5139 0.8900 37 1 0.8058 2.7271 1.2535 38 1 1.5850 1.3736 2.1291 39 1 2.8773 3.9476 1.0682 40 1 3.0253 3.2201 2.7003 41 1 4.3892 1.4057 1.8857 42 1 4.9769 2.7740 0.8897 43 1 4.1116 -0.0185 -2.2379 44 1 2.9545 -2.4823 -2.5594 45 1 3.3969 -3.5514 -1.1586 46 1 3.5432 -3.5703 -4.3860 47 1 3.5708 -5.8046 -3.4299 48 1 5.2623 -5.9283 -3.9698 49 1 3.8101 -7.8743 -5.1390 50 1 3.5565 -9.5709 -5.5445 51 1 6.6369 -2.2362 -2.7208 52 1 5.2398 -1.5548 -3.6613 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265556143.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:20 Heat of formation + Delta-G solvation = -75.391519 kcal Electronic energy + Delta-G solvation = -29143.084120 eV Core-core repulsion = 25141.882781 eV Total energy + Delta-G solvation = -4001.201340 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.93471 -39.41750 -38.25969 -37.45339 -34.77809 -34.13747 -33.47678 -32.59330 -31.05088 -29.69994 -27.95410 -26.75953 -25.84190 -24.35360 -23.49321 -22.98034 -21.44857 -20.95552 -20.45335 -19.68515 -19.14157 -17.91536 -17.22407 -16.80943 -16.38543 -16.15955 -15.49846 -15.25514 -15.15967 -14.85915 -14.63836 -14.54593 -13.98401 -13.79581 -13.59388 -13.52096 -13.39004 -13.11414 -12.80465 -12.61601 -12.44800 -12.28053 -11.93287 -11.76319 -11.63307 -11.41542 -11.33309 -11.23149 -11.22714 -11.04844 -11.01283 -10.96614 -10.88310 -10.86492 -10.75045 -10.20956 -9.87655 -9.87008 -9.55364 -9.21023 -8.51849 -8.10412 -8.02986 -6.75892 -3.89072 2.39670 2.93173 3.30638 3.34537 3.54957 3.83749 4.04537 4.09766 4.15663 4.23768 4.31155 4.43264 4.51719 4.66686 4.74521 4.79649 4.82429 4.87062 4.97442 5.02147 5.04808 5.15009 5.19290 5.24790 5.27220 5.33128 5.39824 5.45910 5.52494 5.56853 5.60041 5.66367 5.67073 5.71808 5.74754 5.76589 5.81720 5.85675 5.90069 5.92276 5.93933 5.99280 6.04660 6.08277 6.36471 7.14122 7.28230 7.56350 7.80193 8.00989 8.07451 8.59516 8.79193 9.47020 9.87020 10.67509 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023305 B = 0.001773 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.192061 B =15788.938645 C =16371.678192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C -0.076 4.076 4 H 0.079 0.921 5 C -0.118 4.118 6 C -0.124 4.124 7 C -0.113 4.113 8 C -0.113 4.113 9 H 0.089 0.911 10 C 0.527 3.473 11 O -0.541 6.541 12 N -0.719 5.719 13 C 0.122 3.878 14 H 0.114 0.886 15 C -0.181 4.181 16 C 0.071 3.929 17 H 0.099 0.901 18 N -0.654 5.654 19 C 0.050 3.950 20 C 0.442 3.558 21 O -0.578 6.578 22 N -0.575 5.575 23 C -0.383 4.383 24 H 0.099 0.901 25 C -0.010 4.010 26 N -0.901 5.901 27 Si 1.092 2.908 28 H -0.279 1.279 29 H -0.284 1.284 30 H -0.284 1.284 31 C -0.133 4.133 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.401 0.599 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.351 0.649 47 H 0.044 0.956 48 H 0.086 0.914 49 H 0.376 0.624 50 H 0.261 0.739 51 H 0.075 0.925 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.359 23.757 16.895 29.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C -0.095 4.095 4 H 0.098 0.902 5 C -0.155 4.155 6 C -0.161 4.161 7 C -0.151 4.151 8 C -0.134 4.134 9 H 0.107 0.893 10 C 0.314 3.686 11 O -0.418 6.418 12 N -0.370 5.370 13 C 0.017 3.983 14 H 0.131 0.869 15 C -0.222 4.222 16 C -0.041 4.041 17 H 0.117 0.883 18 N -0.285 5.285 19 C -0.083 4.083 20 C 0.228 3.772 21 O -0.462 6.462 22 N -0.213 5.213 23 C -0.512 4.512 24 H 0.117 0.883 25 C -0.212 4.212 26 N -0.540 5.540 27 Si 0.918 3.082 28 H -0.204 1.204 29 H -0.210 1.210 30 H -0.210 1.210 31 C -0.172 4.172 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.086 0.914 43 H 0.235 0.765 44 H 0.105 0.895 45 H 0.089 0.911 46 H 0.172 0.828 47 H 0.062 0.938 48 H 0.104 0.896 49 H 0.209 0.791 50 H 0.072 0.928 51 H 0.094 0.906 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.100 22.514 15.790 27.500 hybrid contribution -0.366 0.998 1.419 1.773 sum -0.465 23.512 17.209 29.141 Atomic orbital electron populations 1.21755 0.95481 1.01793 1.01682 1.21855 0.96398 0.95627 1.02954 1.21728 0.92036 0.96935 0.98796 0.90223 1.22450 0.97872 0.98578 0.96630 1.22490 0.94553 0.97970 1.01103 1.22376 0.97722 0.98832 0.96163 1.22070 0.96942 0.93370 1.01038 0.89262 1.20477 0.76282 0.88519 0.83334 1.90678 1.51381 1.64543 1.35175 1.46104 1.66865 1.15667 1.08320 1.22410 0.95955 0.80785 0.99155 0.86852 1.24264 0.98303 0.98778 1.00855 1.22823 0.96307 0.95912 0.89057 0.88265 1.60011 1.37766 1.05538 1.25217 1.21715 1.01097 0.89201 0.96298 1.19754 0.84795 0.83218 0.89419 1.90524 1.55945 1.51062 1.48644 1.41939 1.60006 1.05693 1.13697 1.20534 1.45264 0.95379 0.90026 0.88337 1.26522 0.96774 0.91253 1.06668 1.70899 1.43240 1.35342 1.04491 0.83128 0.76534 0.76249 0.72330 1.20405 1.21033 1.20988 1.23455 1.00290 0.97184 0.96233 0.92793 0.92709 0.92654 0.91633 0.90984 0.91492 0.91151 0.91483 0.91279 0.89598 0.91447 0.76471 0.89535 0.91130 0.82812 0.93820 0.89601 0.79135 0.92761 0.90621 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.77 37.16 0.36 -0.76 16 2 C -0.13 -1.10 4.12 -26.73 -0.11 -1.21 16 3 C -0.08 -0.52 2.93 -89.50 -0.26 -0.79 16 4 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 5 C -0.12 -0.76 5.55 -25.07 -0.14 -0.90 16 6 C -0.12 -0.73 6.91 -24.70 -0.17 -0.91 16 7 C -0.11 -0.83 6.32 -25.03 -0.16 -0.99 16 8 C -0.11 -0.82 3.29 -90.65 -0.30 -1.12 16 9 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 10 C 0.53 5.16 4.68 -10.99 -0.05 5.11 16 11 O -0.54 -7.29 14.63 5.55 0.08 -7.21 16 12 N -0.72 -6.05 4.81 -52.93 -0.25 -6.30 16 13 C 0.12 1.18 4.24 -67.02 -0.28 0.89 16 14 H 0.11 1.23 7.46 -51.93 -0.39 0.84 16 15 C -0.18 -1.89 7.52 -25.83 -0.19 -2.08 16 16 C 0.07 0.82 4.16 -66.90 -0.28 0.54 16 17 H 0.10 1.10 7.88 -51.93 -0.41 0.69 16 18 N -0.65 -10.15 6.24 -107.13 -0.67 -10.82 16 19 C 0.05 0.86 6.02 -4.98 -0.03 0.83 16 20 C 0.44 10.45 7.82 -10.99 -0.09 10.36 16 21 O -0.58 -15.78 15.78 5.54 0.09 -15.70 16 22 N -0.58 -14.52 5.28 -10.96 -0.06 -14.58 16 23 C -0.38 -10.81 9.68 -14.93 -0.14 -10.95 16 24 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 25 C -0.01 -0.27 5.50 -17.47 -0.10 -0.36 16 26 N -0.90 -25.30 13.68 55.50 0.76 -24.54 16 27 Si 1.09 24.31 29.92 -169.99 -5.09 19.22 16 28 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 29 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 30 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 31 C -0.13 -1.30 7.63 -25.92 -0.20 -1.50 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.38 7.52 -51.93 -0.39 -0.01 16 35 H 0.07 0.59 6.80 -51.93 -0.35 0.24 16 36 H 0.07 0.76 7.12 -51.93 -0.37 0.39 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.52 7.75 -51.93 -0.40 0.12 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.82 6.89 -51.93 -0.36 0.46 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.40 2.55 8.73 -40.82 -0.36 2.19 16 44 H 0.09 0.91 7.83 -51.93 -0.41 0.50 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.35 5.64 7.91 -39.29 -0.31 5.33 16 47 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.09 1.37 8.13 -51.93 -0.42 0.95 16 49 H 0.38 8.75 6.73 -40.82 -0.27 8.47 16 50 H 0.26 7.05 6.78 -40.82 -0.28 6.77 16 51 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 52 H 0.09 0.90 8.12 -51.93 -0.42 0.48 16 LS Contribution 410.16 15.07 6.18 6.18 Total: -1.00 -33.86 410.16 -10.06 -43.92 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -8.96 Total: 13.66 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -2.14 Total: -3.83 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.22 Total: -56.25 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: 0.17 Total: -22.91 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -5.09 Total: 19.22 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.86 -10.06 -43.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265556143.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.472 kcal (2) G-P(sol) polarization free energy of solvation -33.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds