Wall clock time and date at job start Tue Mar 31 2020 20:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47248 * 2 1 4 4 H 1.09004 * 110.05851 * 306.69903 * 3 2 1 5 5 C 1.54265 * 110.03559 * 68.11630 * 3 2 1 6 6 C 1.54890 * 104.19985 * 142.89165 * 5 3 2 7 7 C 1.54961 * 102.77831 * 322.08981 * 6 5 3 8 8 C 1.53885 * 110.03375 * 185.28240 * 3 2 1 9 9 H 1.08999 * 110.02593 * 121.38213 * 8 3 2 10 10 C 1.50694 * 110.03024 * 0.02562 * 8 3 2 11 11 O 1.21288 * 119.99646 * 273.69878 * 10 8 3 12 12 N 1.34774 * 120.00329 * 93.69652 * 10 8 3 13 13 C 1.46503 * 119.99875 * 180.02562 * 12 10 8 14 14 H 1.08998 * 112.85117 * 336.18834 * 13 12 10 15 15 C 1.53954 * 113.74626 * 107.40253 * 13 12 10 16 16 C 1.53782 * 87.01790 * 139.94045 * 15 13 12 17 17 H 1.09000 * 113.61279 * 89.23128 * 16 15 13 18 18 N 1.46906 * 113.61163 * 220.04891 * 16 15 13 19 19 C 1.46901 * 110.99743 * 254.14183 * 18 16 15 20 20 C 1.50695 * 109.47103 * 180.02562 * 19 18 16 21 21 O 1.21298 * 120.00008 * 359.97438 * 20 19 18 22 22 N 1.34776 * 120.00376 * 180.02562 * 20 19 18 23 23 C 1.37091 * 120.00297 * 179.97438 * 22 20 19 24 24 H 1.08001 * 120.00238 * 359.97438 * 23 22 20 25 25 C 1.38957 * 120.00024 * 179.97438 * 23 22 20 26 26 N 1.31409 * 119.99663 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99834 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.46595 * 179.97438 * 27 25 23 29 29 H 1.48498 * 109.47306 * 300.00105 * 27 25 23 30 30 H 1.48496 * 109.46978 * 60.00481 * 27 25 23 31 31 C 1.53779 * 87.17540 * 334.63906 * 16 15 13 32 32 H 1.08994 * 109.46499 * 60.00023 * 1 2 3 33 33 H 1.09000 * 109.46914 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46864 * 300.00151 * 1 2 3 35 35 H 1.09007 * 109.47212 * 239.99961 * 2 1 3 36 36 H 1.09007 * 109.47068 * 120.00154 * 2 1 3 37 37 H 1.08999 * 110.49151 * 261.57386 * 5 3 2 38 38 H 1.09007 * 110.48311 * 24.08706 * 5 3 2 39 39 H 1.08999 * 110.75443 * 80.37296 * 6 5 3 40 40 H 1.08999 * 110.75982 * 203.56159 * 6 5 3 41 41 H 1.09000 * 110.47692 * 279.22776 * 7 6 5 42 42 H 1.09001 * 110.53174 * 156.56208 * 7 6 5 43 43 H 0.97000 * 119.99714 * 359.97438 * 12 10 8 44 44 H 1.09000 * 113.60851 * 25.42057 * 15 13 12 45 45 H 1.08995 * 113.66531 * 254.47047 * 15 13 12 46 46 H 1.00904 * 110.99970 * 18.08966 * 18 16 15 47 47 H 1.08995 * 109.47478 * 59.99449 * 19 18 16 48 48 H 1.09002 * 109.47055 * 299.99692 * 19 18 16 49 49 H 0.97000 * 119.99657 * 359.97438 * 22 20 19 50 50 H 0.97000 * 120.00504 * 359.97438 * 26 25 23 51 51 H 1.08997 * 113.61192 * 139.93817 * 31 16 15 52 52 H 1.08997 * 113.61395 * 270.84053 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5878 1.9989 -0.8210 5 6 1.7069 2.1208 1.3449 6 6 2.9367 3.0173 1.6331 7 6 4.1188 2.1481 1.1349 8 6 3.5730 1.4595 -0.1331 9 1 3.8645 2.0235 -1.0191 10 6 4.0991 0.0503 -0.2230 11 8 4.3385 -0.5734 0.7893 12 7 4.3034 -0.5172 -1.4283 13 6 4.8143 -1.8875 -1.5156 14 1 5.3660 -2.1910 -0.6259 15 6 3.7597 -2.9148 -1.9655 16 6 4.8688 -3.5633 -2.8107 17 1 5.4358 -4.3255 -2.2762 18 7 4.4138 -4.0133 -4.1330 19 6 4.2923 -5.4766 -4.1781 20 6 3.8252 -5.9000 -5.5468 21 8 3.6137 -5.0649 -6.4007 22 7 3.6413 -7.2065 -5.8219 23 6 3.2158 -7.5916 -7.0670 24 1 3.0275 -6.8480 -7.8273 25 6 3.0268 -8.9387 -7.3507 26 7 3.2554 -9.8434 -6.4255 27 14 2.4464 -9.4633 -9.0470 28 1 2.3244 -10.9427 -9.0927 29 1 1.1248 -8.8482 -9.3302 30 1 3.4291 -9.0164 -10.0666 31 6 5.5536 -2.1866 -2.8305 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 1.8934 -0.5139 0.8900 37 1 0.8058 2.7271 1.2535 38 1 1.5850 1.3736 2.1291 39 1 2.8773 3.9476 1.0682 40 1 3.0253 3.2201 2.7003 41 1 4.3892 1.4057 1.8857 42 1 4.9769 2.7740 0.8897 43 1 4.1116 -0.0185 -2.2379 44 1 2.9545 -2.4823 -2.5594 45 1 3.3969 -3.5514 -1.1586 46 1 3.5432 -3.5703 -4.3860 47 1 3.5708 -5.8046 -3.4299 48 1 5.2623 -5.9283 -3.9698 49 1 3.8101 -7.8743 -5.1390 50 1 3.5565 -9.5709 -5.5445 51 1 6.6369 -2.2362 -2.7208 52 1 5.2398 -1.5548 -3.6613 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265556143.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:20 Heat of formation + Delta-G solvation = -99.017453 kcal Electronic energy + Delta-G solvation = -29144.108618 eV Core-core repulsion = 25141.882781 eV Total energy + Delta-G solvation = -4002.225837 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.68378 -40.52975 -39.86028 -38.22790 -36.49437 -35.52122 -34.10547 -33.67878 -33.05984 -30.31416 -28.52314 -28.27638 -26.68847 -26.05105 -24.52185 -23.68740 -22.24756 -21.68599 -21.49621 -21.09571 -19.99929 -19.92134 -18.19556 -17.88125 -17.48015 -17.00047 -16.77596 -16.53562 -16.22046 -15.87236 -15.74598 -15.52699 -15.32936 -15.01151 -14.77372 -14.55485 -14.33232 -14.19218 -13.70327 -13.50505 -13.38185 -13.32030 -13.19861 -13.02890 -12.75675 -12.53009 -12.24674 -12.21896 -11.99797 -11.91930 -11.90634 -11.88696 -11.83741 -11.78562 -11.52737 -11.49769 -11.48044 -11.36869 -10.67585 -10.40945 -10.11994 -10.01530 -9.31861 -8.93309 -6.07401 1.52295 1.54553 1.63560 1.82756 1.99728 2.19549 2.41319 2.83986 3.16137 3.34005 3.47416 3.56487 3.58774 3.67765 3.73159 3.87037 3.93955 4.07336 4.12696 4.18502 4.33400 4.37114 4.38711 4.43642 4.51683 4.56787 4.59360 4.64667 4.73280 4.75009 4.76020 4.76721 4.86492 4.95108 5.02130 5.04371 5.08717 5.11463 5.15368 5.21318 5.24438 5.34186 5.40915 5.51266 5.56991 5.60779 5.93937 6.02143 6.32542 6.56960 6.59198 6.73570 7.28355 7.43460 7.91175 8.54274 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023305 B = 0.001773 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.192061 B =15788.938645 C =16371.678192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C -0.073 4.073 4 H 0.100 0.900 5 C -0.118 4.118 6 C -0.118 4.118 7 C -0.115 4.115 8 C -0.110 4.110 9 H 0.116 0.884 10 C 0.525 3.475 11 O -0.583 6.583 12 N -0.710 5.710 13 C 0.130 3.870 14 H 0.102 0.898 15 C -0.174 4.174 16 C 0.066 3.934 17 H 0.108 0.892 18 N -0.665 5.665 19 C 0.064 3.936 20 C 0.441 3.559 21 O -0.617 6.617 22 N -0.587 5.587 23 C -0.411 4.411 24 H 0.074 0.926 25 C -0.043 4.043 26 N -0.917 5.917 27 Si 1.134 2.866 28 H -0.273 1.273 29 H -0.272 1.272 30 H -0.273 1.273 31 C -0.121 4.121 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.043 0.957 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.079 0.921 43 H 0.413 0.587 44 H 0.087 0.913 45 H 0.064 0.936 46 H 0.347 0.653 47 H 0.066 0.934 48 H 0.105 0.895 49 H 0.384 0.616 50 H 0.259 0.741 51 H 0.083 0.917 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.482 25.420 16.739 30.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.092 4.092 4 H 0.118 0.882 5 C -0.156 4.156 6 C -0.156 4.156 7 C -0.153 4.153 8 C -0.132 4.132 9 H 0.134 0.866 10 C 0.313 3.687 11 O -0.463 6.463 12 N -0.360 5.360 13 C 0.024 3.976 14 H 0.120 0.880 15 C -0.215 4.215 16 C -0.044 4.044 17 H 0.126 0.874 18 N -0.297 5.297 19 C -0.069 4.069 20 C 0.229 3.771 21 O -0.503 6.503 22 N -0.226 5.226 23 C -0.540 4.540 24 H 0.092 0.908 25 C -0.241 4.241 26 N -0.556 5.556 27 Si 0.954 3.046 28 H -0.198 1.198 29 H -0.197 1.197 30 H -0.198 1.198 31 C -0.160 4.160 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.250 0.750 44 H 0.105 0.895 45 H 0.083 0.917 46 H 0.166 0.834 47 H 0.083 0.917 48 H 0.123 0.877 49 H 0.219 0.781 50 H 0.070 0.930 51 H 0.102 0.898 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.209 24.199 15.654 28.822 hybrid contribution -0.304 0.533 1.537 1.655 sum -0.513 24.732 17.191 30.124 Atomic orbital electron populations 1.21739 0.94741 1.01475 1.02521 1.21777 0.97027 0.96528 1.01116 1.21764 0.91717 0.95935 0.99776 0.88197 1.22452 0.98862 0.98436 0.95842 1.22487 0.93365 0.98195 1.01518 1.22368 0.98875 0.98541 0.95536 1.22158 0.97096 0.91760 1.02157 0.86559 1.20969 0.75482 0.89363 0.82866 1.90664 1.53223 1.65755 1.36638 1.46021 1.66147 1.15211 1.08660 1.22188 0.95476 0.81319 0.98609 0.88017 1.24184 0.98170 0.98784 1.00352 1.22962 0.97042 0.96943 0.87473 0.87392 1.60050 1.37614 1.04230 1.27773 1.21594 1.02285 0.90674 0.92316 1.20893 0.82701 0.82176 0.91349 1.90493 1.57128 1.51983 1.50717 1.42005 1.60651 1.06722 1.13208 1.20533 1.46986 0.95445 0.91057 0.90804 1.27849 0.95942 0.90973 1.09354 1.70970 1.44110 1.35657 1.04843 0.82628 0.76921 0.76246 0.68844 1.19773 1.19742 1.19811 1.23371 1.00634 0.95845 0.96135 0.91682 0.93665 0.92011 0.92414 0.93843 0.89993 0.92892 0.89672 0.91136 0.92454 0.90249 0.74977 0.89458 0.91697 0.83371 0.91653 0.87662 0.78147 0.93010 0.89829 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.77 71.98 0.70 -1.38 16 2 C -0.13 -2.08 4.12 30.59 0.13 -1.96 16 3 C -0.07 -0.88 2.93 -10.07 -0.03 -0.91 16 4 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 5 C -0.12 -1.35 5.55 31.67 0.18 -1.18 16 6 C -0.12 -1.19 6.91 31.91 0.22 -0.97 16 7 C -0.12 -1.56 6.32 31.69 0.20 -1.36 16 8 C -0.11 -1.42 3.29 -10.81 -0.04 -1.45 16 9 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 10 C 0.52 9.97 4.68 87.66 0.41 10.38 16 11 O -0.58 -16.13 14.63 -3.06 -0.04 -16.17 16 12 N -0.71 -11.04 4.81 -439.75 -2.11 -13.16 16 13 C 0.13 2.37 4.24 45.58 0.19 2.56 16 14 H 0.10 2.17 7.46 -2.39 -0.02 2.15 16 15 C -0.17 -3.45 7.52 31.18 0.23 -3.22 16 16 C 0.07 1.43 4.16 45.44 0.19 1.62 16 17 H 0.11 2.17 7.88 -2.39 -0.02 2.15 16 18 N -0.67 -19.80 6.24 -492.85 -3.07 -22.87 16 19 C 0.06 2.12 6.02 85.56 0.52 2.63 16 20 C 0.44 20.82 7.82 87.66 0.69 21.50 16 21 O -0.62 -34.11 15.78 -3.09 -0.05 -34.16 16 22 N -0.59 -29.85 5.28 -306.98 -1.62 -31.48 16 23 C -0.41 -23.55 9.68 84.04 0.81 -22.74 16 24 H 0.07 4.53 7.16 -2.91 -0.02 4.51 16 25 C -0.04 -2.34 5.50 84.93 0.47 -1.88 16 26 N -0.92 -51.32 13.68 21.67 0.30 -51.02 16 27 Si 1.13 48.50 29.92 68.60 2.05 50.55 16 28 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 29 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 30 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 31 C -0.12 -2.16 7.63 31.12 0.24 -1.92 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.78 7.52 -2.39 -0.02 0.77 16 35 H 0.06 1.01 6.80 -2.38 -0.02 1.00 16 36 H 0.04 0.96 7.12 -2.38 -0.02 0.94 16 37 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.05 0.79 7.75 -2.38 -0.02 0.77 16 39 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.06 1.12 6.89 -2.39 -0.02 1.11 16 42 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.41 4.39 8.73 -92.71 -0.81 3.58 16 44 H 0.09 1.74 7.83 -2.39 -0.02 1.72 16 45 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.35 10.84 7.91 -89.69 -0.71 10.13 16 47 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.11 3.14 8.13 -2.39 -0.02 3.12 16 49 H 0.38 17.96 6.73 -92.71 -0.62 17.34 16 50 H 0.26 14.02 6.78 -92.71 -0.63 13.40 16 51 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 52 H 0.09 1.67 8.12 -2.39 -0.02 1.65 16 Total: -1.00 -74.54 410.16 -0.51 -75.05 By element: Atomic # 1 Polarization: 44.56 SS G_CDS: -1.06 Total: 43.50 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 5.11 Total: -0.24 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -6.51 Total: -118.53 kcal Atomic # 8 Polarization: -50.24 SS G_CDS: -0.09 Total: -50.33 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 2.05 Total: 50.55 kcal Total: -74.54 -0.51 -75.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265556143.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.965 kcal (2) G-P(sol) polarization free energy of solvation -74.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds