Wall clock time and date at job start Tue Mar 31 2020 20:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47195 * 2 1 4 4 H 1.09010 * 110.01586 * 55.84803 * 3 2 1 5 5 C 1.54264 * 110.03448 * 294.45646 * 3 2 1 6 6 C 1.54891 * 104.31267 * 217.03952 * 5 3 2 7 7 C 1.55241 * 102.58823 * 37.92775 * 6 5 3 8 8 C 1.53878 * 110.03276 * 177.28519 * 3 2 1 9 9 H 1.08997 * 110.03185 * 238.61959 * 8 3 2 10 10 C 1.50706 * 110.02947 * 0.02562 * 8 3 2 11 11 O 1.21275 * 119.99860 * 86.81429 * 10 8 3 12 12 N 1.34774 * 120.00028 * 266.80993 * 10 8 3 13 13 C 1.46495 * 119.99906 * 180.02562 * 12 10 8 14 14 H 1.09003 * 112.85059 * 336.19776 * 13 12 10 15 15 C 1.53781 * 113.61660 * 107.50710 * 13 12 10 16 16 C 1.53778 * 87.08300 * 139.97921 * 15 13 12 17 17 H 1.09000 * 113.60963 * 89.12043 * 16 15 13 18 18 N 1.46900 * 113.61394 * 220.01696 * 16 15 13 19 19 C 1.46901 * 111.00114 * 252.49915 * 18 16 15 20 20 C 1.50704 * 109.47052 * 180.02562 * 19 18 16 21 21 O 1.21285 * 119.99981 * 0.02562 * 20 19 18 22 22 N 1.34775 * 119.99889 * 179.97438 * 20 19 18 23 23 C 1.37094 * 119.99816 * 179.97438 * 22 20 19 24 24 H 1.08002 * 120.00248 * 0.02562 * 23 22 20 25 25 C 1.38952 * 119.99789 * 180.02562 * 23 22 20 26 26 N 1.31411 * 120.00275 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 120.00043 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47188 * 59.99390 * 27 25 23 29 29 H 1.48492 * 109.47445 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.46975 * 299.99779 * 27 25 23 31 31 C 1.53781 * 87.08311 * 334.57030 * 16 15 13 32 32 H 1.08994 * 109.47179 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47089 * 299.99896 * 1 2 3 34 34 H 1.08994 * 109.47069 * 59.99968 * 1 2 3 35 35 H 1.08994 * 109.46866 * 239.99655 * 2 1 3 36 36 H 1.09004 * 109.46958 * 120.00075 * 2 1 3 37 37 H 1.09003 * 110.48081 * 335.77975 * 5 3 2 38 38 H 1.08996 * 110.48958 * 98.29351 * 5 3 2 39 39 H 1.08993 * 110.75752 * 156.31953 * 6 5 3 40 40 H 1.09001 * 110.75971 * 279.69603 * 6 5 3 41 41 H 1.08996 * 110.47228 * 203.39575 * 7 6 5 42 42 H 1.09000 * 110.58051 * 80.83010 * 7 6 5 43 43 H 0.96998 * 119.99963 * 0.02562 * 12 10 8 44 44 H 1.09003 * 113.61071 * 254.53407 * 15 13 12 45 45 H 1.08997 * 113.61345 * 25.42717 * 15 13 12 46 46 H 1.00897 * 111.00049 * 16.45367 * 18 16 15 47 47 H 1.09003 * 109.47137 * 299.99970 * 19 18 16 48 48 H 1.09006 * 109.47084 * 60.00350 * 19 18 16 49 49 H 0.96996 * 119.99871 * 0.02562 * 22 20 19 50 50 H 0.96993 * 120.00340 * 180.02562 * 26 25 23 51 51 H 1.09002 * 113.60814 * 270.88672 * 31 16 15 52 52 H 1.08997 * 113.61309 * 139.98302 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6223 1.9859 0.8476 5 6 1.6505 2.1407 -1.3193 6 6 2.8651 3.0442 -1.6474 7 6 4.0682 2.1652 -1.2116 8 6 3.5772 1.4580 0.0685 9 1 3.9061 2.0088 0.9497 10 6 4.1062 0.0476 0.1138 11 8 4.3113 -0.5565 -0.9176 12 7 4.3515 -0.5423 1.3005 13 6 4.8662 -1.9132 1.3445 14 1 4.6288 -2.4835 0.4464 15 6 6.3438 -2.0033 1.7610 16 6 5.9543 -3.2412 2.5860 17 1 6.0157 -4.1751 2.0274 18 7 6.6219 -3.3115 3.8926 19 6 7.6507 -4.3601 3.9024 20 6 8.3118 -4.4026 5.2560 21 8 7.9602 -3.6352 6.1270 22 7 9.2930 -5.2940 5.4990 23 6 9.8948 -5.3323 6.7303 24 1 9.5823 -4.6484 7.5056 25 6 10.9067 -6.2510 6.9807 26 7 11.2867 -7.0834 6.0375 27 14 11.7263 -6.3037 8.6585 28 1 10.7077 -6.5997 9.6978 29 1 12.7657 -7.3641 8.6686 30 1 12.3564 -4.9895 8.9431 31 6 4.5344 -2.6542 2.6505 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 1.8933 -0.5139 -0.8899 36 1 1.8934 -0.5139 0.8900 37 1 1.4976 1.4054 -2.1093 38 1 0.7529 2.7435 -1.1813 39 1 2.9083 3.2607 -2.7147 40 1 2.8293 3.9657 -1.0663 41 1 4.9362 2.7876 -0.9945 42 1 4.3078 1.4338 -1.9834 43 1 4.1872 -0.0592 2.1254 44 1 7.0180 -2.2244 0.9335 45 1 6.6785 -1.1619 2.3677 46 1 7.0145 -2.4174 4.1466 47 1 7.1882 -5.3249 3.6939 48 1 8.3981 -4.1430 3.1393 49 1 9.5739 -5.9079 4.8026 50 1 11.9928 -7.7250 6.2124 51 1 4.3745 -1.9907 3.5004 52 1 3.7479 -3.4009 2.5412 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265556144.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:23 Heat of formation + Delta-G solvation = -76.129002 kcal Electronic energy + Delta-G solvation = -28880.557971 eV Core-core repulsion = 24879.324652 eV Total energy + Delta-G solvation = -4001.233319 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.90353 -39.37843 -38.11755 -37.41178 -34.61972 -33.86796 -33.47393 -32.52916 -31.19460 -29.69122 -27.93553 -26.81564 -25.78272 -24.50968 -23.51551 -22.97232 -21.41600 -20.92977 -20.37044 -19.41161 -18.99501 -17.87508 -17.18078 -16.71335 -16.32812 -15.92775 -15.46504 -15.20438 -15.04560 -14.74618 -14.62093 -14.46843 -14.13257 -13.87003 -13.61625 -13.33707 -13.28935 -13.00488 -12.74679 -12.57760 -12.41225 -12.11143 -11.95569 -11.67947 -11.61801 -11.55397 -11.39393 -11.28979 -11.21435 -11.05343 -11.02025 -10.91899 -10.90507 -10.85744 -10.73021 -10.44404 -10.21335 -9.84868 -9.50296 -9.17151 -8.45179 -8.02622 -7.95324 -6.41646 -3.82634 2.42477 2.96572 3.20003 3.25762 3.30113 3.90834 4.06046 4.10981 4.16357 4.25218 4.30916 4.47829 4.57277 4.68643 4.78570 4.80280 4.85992 4.90236 4.95492 5.05194 5.15194 5.18336 5.19285 5.27088 5.27403 5.31919 5.44314 5.44942 5.53322 5.62568 5.66282 5.66402 5.70444 5.74274 5.79000 5.79434 5.83971 5.91329 5.91774 5.97938 6.01110 6.02377 6.07193 6.27544 6.41413 7.23879 7.31949 7.54849 7.64890 8.04013 8.05986 8.61166 9.17593 9.54226 10.05646 10.75961 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030371 B = 0.001616 C = 0.001597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.702303 B =17320.400927 C =17530.881366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.132 4.132 3 C -0.076 4.076 4 H 0.079 0.921 5 C -0.118 4.118 6 C -0.124 4.124 7 C -0.114 4.114 8 C -0.113 4.113 9 H 0.089 0.911 10 C 0.527 3.473 11 O -0.541 6.541 12 N -0.719 5.719 13 C 0.122 3.878 14 H 0.113 0.887 15 C -0.181 4.181 16 C 0.071 3.929 17 H 0.099 0.901 18 N -0.655 5.655 19 C 0.049 3.951 20 C 0.440 3.560 21 O -0.585 6.585 22 N -0.563 5.563 23 C -0.301 4.301 24 H 0.102 0.898 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.931 3.069 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.274 1.274 31 C -0.133 4.133 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.401 0.599 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.351 0.649 47 H 0.086 0.914 48 H 0.044 0.956 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.091 0.909 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.731 16.772 -16.192 29.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C -0.095 4.095 4 H 0.098 0.902 5 C -0.155 4.155 6 C -0.161 4.161 7 C -0.152 4.152 8 C -0.134 4.134 9 H 0.108 0.892 10 C 0.314 3.686 11 O -0.418 6.418 12 N -0.369 5.369 13 C 0.016 3.984 14 H 0.131 0.869 15 C -0.222 4.222 16 C -0.041 4.041 17 H 0.117 0.883 18 N -0.286 5.286 19 C -0.083 4.083 20 C 0.225 3.775 21 O -0.469 6.469 22 N -0.200 5.200 23 C -0.430 4.430 24 H 0.120 0.880 25 C -0.179 4.179 26 N -0.543 5.543 27 Si 0.758 3.242 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 C -0.172 4.172 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.104 0.896 43 H 0.235 0.765 44 H 0.089 0.911 45 H 0.105 0.895 46 H 0.172 0.828 47 H 0.104 0.896 48 H 0.062 0.938 49 H 0.226 0.774 50 H 0.082 0.918 51 H 0.109 0.891 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.128 16.271 -16.033 29.794 hybrid contribution 1.361 0.105 0.365 1.413 sum -17.767 16.376 -15.668 28.798 Atomic orbital electron populations 1.21753 0.95526 1.01686 1.01695 1.21854 0.96361 0.95728 1.02969 1.21720 0.91966 0.96825 0.98963 0.90246 1.22445 0.97858 0.98445 0.96774 1.22542 0.94506 0.97903 1.01180 1.22426 0.97792 0.98666 0.96269 1.22065 0.96912 0.93382 1.01080 0.89229 1.20467 0.76148 0.88467 0.83537 1.90673 1.52340 1.65546 1.33255 1.46107 1.66740 1.15619 1.08449 1.22390 0.93968 0.82592 0.99408 0.86865 1.24231 0.97131 0.99789 1.01024 1.22815 0.94864 0.96967 0.89435 0.88286 1.60012 1.32253 1.10136 1.26179 1.21727 0.93550 0.96520 0.96528 1.19829 0.83489 0.84742 0.89401 1.90514 1.65789 1.43568 1.47053 1.41859 1.31913 1.31971 1.14225 1.19657 1.15108 1.17831 0.90431 0.87980 1.25266 0.97376 0.95846 0.99433 1.69601 1.30393 1.20947 1.33341 0.85911 0.78697 0.77890 0.81673 1.19886 1.20974 1.19937 1.23464 0.97752 0.99575 0.96375 0.92769 0.92825 0.92644 0.90920 0.91618 0.91174 0.91530 0.91261 0.91457 0.91463 0.89570 0.76480 0.91142 0.89506 0.82849 0.89551 0.93753 0.77441 0.91812 0.89059 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.74 37.16 0.36 -0.60 16 2 C -0.13 -1.00 4.11 -26.73 -0.11 -1.11 16 3 C -0.08 -0.49 2.95 -89.50 -0.26 -0.76 16 4 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 5 C -0.12 -0.72 5.41 -25.07 -0.14 -0.86 16 6 C -0.12 -0.74 6.94 -24.55 -0.17 -0.91 16 7 C -0.11 -0.86 6.32 -24.88 -0.16 -1.02 16 8 C -0.11 -0.83 3.29 -90.65 -0.30 -1.13 16 9 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 10 C 0.53 5.20 4.71 -10.98 -0.05 5.15 16 11 O -0.54 -7.34 14.57 5.56 0.08 -7.26 16 12 N -0.72 -6.10 4.82 -53.02 -0.26 -6.36 16 13 C 0.12 1.18 4.24 -67.12 -0.28 0.90 16 14 H 0.11 1.24 7.46 -51.93 -0.39 0.85 16 15 C -0.18 -1.92 7.49 -25.92 -0.19 -2.12 16 16 C 0.07 0.83 4.18 -66.90 -0.28 0.55 16 17 H 0.10 1.11 7.87 -51.93 -0.41 0.70 16 18 N -0.65 -10.24 6.24 -107.13 -0.67 -10.90 16 19 C 0.05 0.86 6.01 -4.97 -0.03 0.83 16 20 C 0.44 10.38 7.82 -10.98 -0.09 10.30 16 21 O -0.58 -15.86 15.78 5.55 0.09 -15.77 16 22 N -0.56 -14.31 5.29 -10.96 -0.06 -14.37 16 23 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 24 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 25 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 26 N -0.90 -24.57 13.05 55.50 0.72 -23.84 16 27 Si 0.93 21.08 29.55 -169.99 -5.02 16.05 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 29 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 30 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 31 C -0.13 -1.31 7.63 -25.92 -0.20 -1.51 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.33 7.43 -51.93 -0.39 -0.06 16 35 H 0.07 0.72 7.03 -51.93 -0.37 0.35 16 36 H 0.07 0.53 6.96 -51.93 -0.36 0.17 16 37 H 0.07 0.50 7.80 -51.93 -0.40 0.09 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.84 6.87 -51.93 -0.36 0.49 16 43 H 0.40 2.58 8.73 -40.82 -0.36 2.22 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.09 0.93 7.82 -51.93 -0.41 0.52 16 46 H 0.35 5.67 7.90 -39.29 -0.31 5.36 16 47 H 0.09 1.40 8.13 -51.93 -0.42 0.97 16 48 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.39 9.53 7.90 -40.82 -0.32 9.20 16 50 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 51 H 0.09 0.91 8.12 -51.93 -0.42 0.49 16 52 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 411.69 15.07 6.20 6.20 Total: -1.00 -32.49 411.69 -10.12 -42.61 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -9.07 Total: 13.97 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -2.14 Total: -0.34 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.26 Total: -55.47 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: 0.17 Total: -23.03 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.49 -10.12 -42.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265556144.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.520 kcal (2) G-P(sol) polarization free energy of solvation -32.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds