Wall clock time and date at job start Tue Mar 31 2020 20:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47195 * 2 1 4 4 H 1.09010 * 110.01586 * 55.84803 * 3 2 1 5 5 C 1.54264 * 110.03448 * 294.45646 * 3 2 1 6 6 C 1.54891 * 104.31267 * 217.03952 * 5 3 2 7 7 C 1.55241 * 102.58823 * 37.92775 * 6 5 3 8 8 C 1.53878 * 110.03276 * 177.28519 * 3 2 1 9 9 H 1.08997 * 110.03185 * 238.61959 * 8 3 2 10 10 C 1.50706 * 110.02947 * 0.02562 * 8 3 2 11 11 O 1.21275 * 119.99860 * 86.81429 * 10 8 3 12 12 N 1.34774 * 120.00028 * 266.80993 * 10 8 3 13 13 C 1.46495 * 119.99906 * 180.02562 * 12 10 8 14 14 H 1.09003 * 112.85059 * 336.19776 * 13 12 10 15 15 C 1.53781 * 113.61660 * 107.50710 * 13 12 10 16 16 C 1.53778 * 87.08300 * 139.97921 * 15 13 12 17 17 H 1.09000 * 113.60963 * 89.12043 * 16 15 13 18 18 N 1.46900 * 113.61394 * 220.01696 * 16 15 13 19 19 C 1.46901 * 111.00114 * 252.49915 * 18 16 15 20 20 C 1.50704 * 109.47052 * 180.02562 * 19 18 16 21 21 O 1.21285 * 119.99981 * 0.02562 * 20 19 18 22 22 N 1.34775 * 119.99889 * 179.97438 * 20 19 18 23 23 C 1.37094 * 119.99816 * 179.97438 * 22 20 19 24 24 H 1.08002 * 120.00248 * 0.02562 * 23 22 20 25 25 C 1.38952 * 119.99789 * 180.02562 * 23 22 20 26 26 N 1.31411 * 120.00275 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 120.00043 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47188 * 59.99390 * 27 25 23 29 29 H 1.48492 * 109.47445 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.46975 * 299.99779 * 27 25 23 31 31 C 1.53781 * 87.08311 * 334.57030 * 16 15 13 32 32 H 1.08994 * 109.47179 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47089 * 299.99896 * 1 2 3 34 34 H 1.08994 * 109.47069 * 59.99968 * 1 2 3 35 35 H 1.08994 * 109.46866 * 239.99655 * 2 1 3 36 36 H 1.09004 * 109.46958 * 120.00075 * 2 1 3 37 37 H 1.09003 * 110.48081 * 335.77975 * 5 3 2 38 38 H 1.08996 * 110.48958 * 98.29351 * 5 3 2 39 39 H 1.08993 * 110.75752 * 156.31953 * 6 5 3 40 40 H 1.09001 * 110.75971 * 279.69603 * 6 5 3 41 41 H 1.08996 * 110.47228 * 203.39575 * 7 6 5 42 42 H 1.09000 * 110.58051 * 80.83010 * 7 6 5 43 43 H 0.96998 * 119.99963 * 0.02562 * 12 10 8 44 44 H 1.09003 * 113.61071 * 254.53407 * 15 13 12 45 45 H 1.08997 * 113.61345 * 25.42717 * 15 13 12 46 46 H 1.00897 * 111.00049 * 16.45367 * 18 16 15 47 47 H 1.09003 * 109.47137 * 299.99970 * 19 18 16 48 48 H 1.09006 * 109.47084 * 60.00350 * 19 18 16 49 49 H 0.96996 * 119.99871 * 0.02562 * 22 20 19 50 50 H 0.96993 * 120.00340 * 180.02562 * 26 25 23 51 51 H 1.09002 * 113.60814 * 270.88672 * 31 16 15 52 52 H 1.08997 * 113.61309 * 139.98302 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6223 1.9859 0.8476 5 6 1.6505 2.1407 -1.3193 6 6 2.8651 3.0442 -1.6474 7 6 4.0682 2.1652 -1.2116 8 6 3.5772 1.4580 0.0685 9 1 3.9061 2.0088 0.9497 10 6 4.1062 0.0476 0.1138 11 8 4.3113 -0.5565 -0.9176 12 7 4.3515 -0.5423 1.3005 13 6 4.8662 -1.9132 1.3445 14 1 4.6288 -2.4835 0.4464 15 6 6.3438 -2.0033 1.7610 16 6 5.9543 -3.2412 2.5860 17 1 6.0157 -4.1751 2.0274 18 7 6.6219 -3.3115 3.8926 19 6 7.6507 -4.3601 3.9024 20 6 8.3118 -4.4026 5.2560 21 8 7.9602 -3.6352 6.1270 22 7 9.2930 -5.2940 5.4990 23 6 9.8948 -5.3323 6.7303 24 1 9.5823 -4.6484 7.5056 25 6 10.9067 -6.2510 6.9807 26 7 11.2867 -7.0834 6.0375 27 14 11.7263 -6.3037 8.6585 28 1 10.7077 -6.5997 9.6978 29 1 12.7657 -7.3641 8.6686 30 1 12.3564 -4.9895 8.9431 31 6 4.5344 -2.6542 2.6505 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 1.8933 -0.5139 -0.8899 36 1 1.8934 -0.5139 0.8900 37 1 1.4976 1.4054 -2.1093 38 1 0.7529 2.7435 -1.1813 39 1 2.9083 3.2607 -2.7147 40 1 2.8293 3.9657 -1.0663 41 1 4.9362 2.7876 -0.9945 42 1 4.3078 1.4338 -1.9834 43 1 4.1872 -0.0592 2.1254 44 1 7.0180 -2.2244 0.9335 45 1 6.6785 -1.1619 2.3677 46 1 7.0145 -2.4174 4.1466 47 1 7.1882 -5.3249 3.6939 48 1 8.3981 -4.1430 3.1393 49 1 9.5739 -5.9079 4.8026 50 1 11.9928 -7.7250 6.2124 51 1 4.3745 -1.9907 3.5004 52 1 3.7479 -3.4009 2.5412 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265556144.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:22 Heat of formation + Delta-G solvation = -98.609176 kcal Electronic energy + Delta-G solvation = -28881.532785 eV Core-core repulsion = 24879.324652 eV Total energy + Delta-G solvation = -4002.208133 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.65220 -40.42484 -39.75504 -38.19173 -36.12267 -35.43067 -34.06191 -33.62813 -33.19230 -30.30329 -28.48607 -28.35918 -26.64035 -26.15061 -24.47702 -23.65025 -22.21706 -21.50318 -21.37968 -20.88815 -20.00309 -19.79731 -17.99162 -17.75654 -17.25233 -16.94096 -16.89027 -16.36875 -16.10994 -15.85430 -15.74422 -15.64883 -15.29931 -14.87506 -14.73378 -14.36969 -14.29020 -14.14548 -13.57946 -13.50691 -13.43181 -13.34062 -13.12332 -12.99659 -12.83040 -12.51844 -12.43634 -12.22673 -12.15401 -12.13488 -11.92221 -11.88512 -11.79250 -11.76780 -11.50154 -11.48603 -11.44285 -11.33551 -10.65342 -10.33541 -10.02109 -9.98379 -9.24669 -8.46574 -5.95650 1.40001 1.41922 1.52968 1.65788 2.04998 2.21941 2.30410 2.97138 3.20562 3.44270 3.49874 3.60713 3.62964 3.71166 3.77100 3.91737 3.99899 4.10628 4.22239 4.32554 4.35464 4.41836 4.47979 4.52990 4.54861 4.62138 4.64099 4.68093 4.77259 4.78103 4.79082 4.80491 4.89995 4.99918 5.03748 5.08039 5.12604 5.14693 5.18576 5.23897 5.26553 5.38399 5.40560 5.43554 5.53936 5.61310 5.92287 6.13693 6.40625 6.59693 6.61627 7.12095 7.30611 7.55931 8.10915 8.70481 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030371 B = 0.001616 C = 0.001597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.702303 B =17320.400927 C =17530.881366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C -0.073 4.073 4 H 0.101 0.899 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.117 4.117 8 C -0.111 4.111 9 H 0.114 0.886 10 C 0.525 3.475 11 O -0.583 6.583 12 N -0.709 5.709 13 C 0.130 3.870 14 H 0.101 0.899 15 C -0.175 4.175 16 C 0.066 3.934 17 H 0.107 0.893 18 N -0.666 5.666 19 C 0.063 3.937 20 C 0.437 3.563 21 O -0.623 6.623 22 N -0.573 5.573 23 C -0.336 4.336 24 H 0.080 0.920 25 C -0.013 4.013 26 N -0.920 5.920 27 Si 0.994 3.006 28 H -0.272 1.272 29 H -0.271 1.271 30 H -0.271 1.271 31 C -0.121 4.121 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.043 0.957 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.413 0.587 44 H 0.065 0.935 45 H 0.088 0.912 46 H 0.346 0.654 47 H 0.104 0.896 48 H 0.065 0.935 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.094 0.906 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.546 17.898 -15.849 30.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C -0.091 4.091 4 H 0.119 0.881 5 C -0.155 4.155 6 C -0.156 4.156 7 C -0.155 4.155 8 C -0.132 4.132 9 H 0.132 0.868 10 C 0.313 3.687 11 O -0.463 6.463 12 N -0.360 5.360 13 C 0.024 3.976 14 H 0.119 0.881 15 C -0.215 4.215 16 C -0.044 4.044 17 H 0.125 0.875 18 N -0.297 5.297 19 C -0.069 4.069 20 C 0.225 3.775 21 O -0.510 6.510 22 N -0.210 5.210 23 C -0.465 4.465 24 H 0.098 0.902 25 C -0.213 4.213 26 N -0.561 5.561 27 Si 0.817 3.183 28 H -0.197 1.197 29 H -0.195 1.195 30 H -0.197 1.197 31 C -0.160 4.160 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.250 0.750 44 H 0.084 0.916 45 H 0.106 0.894 46 H 0.166 0.834 47 H 0.122 0.878 48 H 0.083 0.917 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.113 0.887 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.958 17.399 -15.700 30.782 hybrid contribution 1.584 -0.239 0.206 1.615 sum -18.373 17.160 -15.494 29.531 Atomic orbital electron populations 1.21732 0.94505 1.01651 1.02482 1.21782 0.97237 0.96296 1.01256 1.21762 0.91232 0.96182 0.99960 0.88104 1.22446 0.98676 0.98288 0.96095 1.22540 0.93379 0.98104 1.01577 1.22420 0.98974 0.98415 0.95694 1.22153 0.97492 0.91670 1.01914 0.86799 1.20956 0.75364 0.89308 0.83044 1.90659 1.54173 1.66730 1.34762 1.46023 1.65998 1.15156 1.08818 1.22161 0.93423 0.83196 0.98838 0.88074 1.24164 0.97553 0.99268 1.00559 1.22950 0.95605 0.97925 0.87956 0.87470 1.60046 1.31562 1.09385 1.28679 1.21595 0.94286 0.98225 0.92786 1.20896 0.82387 0.83037 0.91229 1.90480 1.66678 1.44740 1.49087 1.41939 1.32616 1.32756 1.13718 1.19649 1.16818 1.18743 0.91334 0.90233 1.26057 0.97279 0.94979 1.02987 1.69665 1.30595 1.21047 1.34792 0.84976 0.77834 0.78190 0.77257 1.19707 1.19522 1.19653 1.23375 0.96717 0.99555 0.96314 0.93292 0.91588 0.92226 0.93828 0.92107 0.92785 0.89872 0.91171 0.89747 0.90717 0.92463 0.74984 0.91640 0.89351 0.83378 0.87783 0.91735 0.76995 0.91297 0.88730 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.74 71.98 0.70 -1.00 16 2 C -0.13 -1.87 4.11 30.59 0.13 -1.74 16 3 C -0.07 -0.81 2.95 -10.07 -0.03 -0.84 16 4 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 5 C -0.12 -1.27 5.41 31.67 0.17 -1.10 16 6 C -0.12 -1.22 6.94 32.01 0.22 -1.00 16 7 C -0.12 -1.69 6.32 31.79 0.20 -1.49 16 8 C -0.11 -1.46 3.29 -10.81 -0.04 -1.50 16 9 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 10 C 0.52 10.14 4.71 87.66 0.41 10.55 16 11 O -0.58 -16.32 14.57 -3.01 -0.04 -16.36 16 12 N -0.71 -11.24 4.82 -440.04 -2.12 -13.37 16 13 C 0.13 2.41 4.24 45.52 0.19 2.60 16 14 H 0.10 2.20 7.46 -2.39 -0.02 2.18 16 15 C -0.17 -3.53 7.49 31.12 0.23 -3.30 16 16 C 0.07 1.46 4.18 45.44 0.19 1.65 16 17 H 0.11 2.21 7.87 -2.39 -0.02 2.19 16 18 N -0.67 -20.08 6.24 -492.84 -3.08 -23.15 16 19 C 0.06 2.15 6.01 85.56 0.51 2.66 16 20 C 0.44 20.74 7.82 87.66 0.69 21.42 16 21 O -0.62 -34.34 15.78 -3.04 -0.05 -34.39 16 22 N -0.57 -29.49 5.29 -306.99 -1.62 -31.12 16 23 C -0.34 -19.13 9.68 84.04 0.81 -18.32 16 24 H 0.08 4.81 7.16 -2.91 -0.02 4.78 16 25 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 26 N -0.92 -49.79 13.05 21.66 0.28 -49.51 16 27 Si 0.99 42.91 29.55 68.60 2.03 44.94 16 28 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 29 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 30 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 31 C -0.12 -2.20 7.63 31.12 0.24 -1.96 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.06 0.64 7.43 -2.39 -0.02 0.62 16 35 H 0.04 0.89 7.03 -2.39 -0.02 0.88 16 36 H 0.06 0.92 6.96 -2.39 -0.02 0.90 16 37 H 0.05 0.76 7.80 -2.39 -0.02 0.74 16 38 H 0.08 0.63 8.14 -2.39 -0.02 0.62 16 39 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.06 1.17 6.87 -2.39 -0.02 1.16 16 43 H 0.41 4.51 8.73 -92.71 -0.81 3.70 16 44 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.09 1.78 7.82 -2.39 -0.02 1.76 16 46 H 0.35 10.94 7.90 -89.70 -0.71 10.23 16 47 H 0.10 3.19 8.13 -2.39 -0.02 3.17 16 48 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 49 H 0.40 19.38 7.90 -92.71 -0.73 18.65 16 50 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 51 H 0.09 1.70 8.12 -2.39 -0.02 1.69 16 52 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -71.42 411.69 -0.81 -72.23 By element: Atomic # 1 Polarization: 45.63 SS G_CDS: -1.31 Total: 44.32 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 5.10 Total: 6.40 kcal Atomic # 7 Polarization: -110.60 SS G_CDS: -6.54 Total: -117.14 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -0.09 Total: -50.75 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -71.42 -0.81 -72.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265556144.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.375 kcal (2) G-P(sol) polarization free energy of solvation -71.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds