Wall clock time and date at job start Tue Mar 31 2020 20:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47683 * 2 1 4 4 H 1.08997 * 110.53603 * 52.38508 * 3 2 1 5 5 C 1.54272 * 110.48261 * 289.77718 * 3 2 1 6 6 C 1.53874 * 106.59335 * 217.70901 * 5 3 2 7 7 C 1.54262 * 106.60003 * 0.02562 * 6 5 3 8 8 C 1.54881 * 104.19695 * 23.61300 * 7 6 5 9 9 H 1.08996 * 110.91888 * 80.44661 * 8 7 6 10 10 C 1.50710 * 110.75663 * 203.74107 * 8 7 6 11 11 O 1.21284 * 119.99664 * 113.32388 * 10 8 7 12 12 N 1.34773 * 119.99978 * 293.32549 * 10 8 7 13 13 C 1.46496 * 119.99981 * 179.97438 * 12 10 8 14 14 H 1.08996 * 112.85363 * 336.20027 * 13 12 10 15 15 C 1.53782 * 113.61185 * 107.50555 * 13 12 10 16 16 C 1.53781 * 87.08130 * 139.98354 * 15 13 12 17 17 H 1.08994 * 113.69121 * 89.12409 * 16 15 13 18 18 N 1.46898 * 113.61251 * 220.02133 * 16 15 13 19 19 C 1.46906 * 110.99888 * 252.49346 * 18 16 15 20 20 C 1.50699 * 109.47140 * 180.02562 * 19 18 16 21 21 O 1.21297 * 119.99980 * 359.97438 * 20 19 18 22 22 N 1.34779 * 120.00037 * 180.02562 * 20 19 18 23 23 C 1.37097 * 119.99944 * 180.02562 * 22 20 19 24 24 H 1.08003 * 120.00055 * 359.97438 * 23 22 20 25 25 C 1.38948 * 119.99682 * 179.97438 * 23 22 20 26 26 N 1.31408 * 120.00492 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99897 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47533 * 89.99708 * 27 25 23 29 29 H 1.48498 * 109.47096 * 210.00002 * 27 25 23 30 30 H 1.48500 * 109.46959 * 329.99458 * 27 25 23 31 31 C 1.53779 * 113.61709 * 205.00189 * 13 12 10 32 32 H 1.08998 * 109.47514 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46799 * 300.00275 * 1 2 3 34 34 H 1.09004 * 109.47076 * 59.99458 * 1 2 3 35 35 H 1.09006 * 109.46799 * 239.99725 * 2 1 3 36 36 H 1.09004 * 109.47076 * 120.00542 * 2 1 3 37 37 H 1.08991 * 110.03431 * 336.99170 * 5 3 2 38 38 H 1.09005 * 110.02991 * 98.42725 * 5 3 2 39 39 H 1.08996 * 110.03034 * 119.28747 * 6 5 3 40 40 H 1.09008 * 110.02798 * 240.71867 * 6 5 3 41 41 H 1.09002 * 110.49080 * 264.92990 * 7 6 5 42 42 H 1.09006 * 110.48602 * 142.28805 * 7 6 5 43 43 H 0.96998 * 119.99751 * 359.97438 * 12 10 8 44 44 H 1.09000 * 113.61639 * 25.43420 * 15 13 12 45 45 H 1.09000 * 113.61581 * 254.53146 * 15 13 12 46 46 H 1.00902 * 111.00533 * 128.53753 * 18 16 15 47 47 H 1.09000 * 109.47033 * 300.00113 * 19 18 16 48 48 H 1.09001 * 109.46544 * 60.00058 * 19 18 16 49 49 H 0.96996 * 119.99844 * 359.97438 * 22 20 19 50 50 H 0.97002 * 120.00294 * 179.97438 * 26 25 23 51 51 H 1.09002 * 113.61735 * 105.46849 * 31 13 12 52 52 H 1.09003 * 113.61060 * 334.56838 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5803 2.0106 0.8085 5 6 1.7591 2.1144 -1.3599 6 6 2.9739 3.0071 -1.6684 7 6 3.9509 2.8459 -0.4855 8 6 3.5839 1.4709 0.1257 9 1 4.0334 0.6587 -0.4455 10 6 4.0031 1.4001 1.5715 11 8 3.1631 1.3318 2.4438 12 7 5.3113 1.4125 1.8952 13 6 5.7188 1.3442 3.3007 14 1 4.9447 1.6945 3.9834 15 6 6.3283 -0.0100 3.7002 16 6 7.3481 0.7838 4.5338 17 1 7.0209 0.9803 5.5547 18 7 8.7121 0.2427 4.4659 19 6 9.0810 -0.4146 5.7269 20 6 10.4835 -0.9554 5.6198 21 8 11.1136 -0.8082 4.5939 22 7 11.0374 -1.6035 6.6637 23 6 12.3135 -2.0950 6.5666 24 1 12.8749 -1.9633 5.6533 25 6 12.8846 -2.7627 7.6430 26 7 12.2018 -2.9227 8.7543 27 14 14.6237 -3.4318 7.5109 28 1 15.5881 -2.3963 7.9609 29 1 14.7565 -4.6376 8.3674 30 1 14.9089 -3.7937 6.0991 31 6 7.1026 1.9579 3.5715 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 1.6465 1.3563 -2.1349 38 1 0.8560 2.7215 -1.2969 39 1 3.4508 2.6822 -2.5930 40 1 2.6602 4.0475 -1.7550 41 1 3.7999 3.6407 0.2451 42 1 4.9817 2.8430 -0.8398 43 1 5.9830 1.4667 1.1976 44 1 6.7736 -0.5516 2.8656 45 1 5.6613 -0.6291 4.3001 46 1 9.3758 0.9639 4.2264 47 1 9.0318 0.3081 6.5413 48 1 8.3895 -1.2335 5.9255 49 1 10.5333 -1.7215 7.4840 50 1 12.6004 -3.3891 9.5056 51 1 7.0607 2.9276 4.0675 52 1 7.7596 1.9543 2.7017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265556145.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:26 Heat of formation + Delta-G solvation = -80.328821 kcal Electronic energy + Delta-G solvation = -28540.567542 eV Core-core repulsion = 24539.152105 eV Total energy + Delta-G solvation = -4001.415437 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.65066 -39.28531 -38.14179 -37.51799 -34.63021 -33.89892 -33.50195 -32.47732 -31.19342 -29.67042 -27.94011 -26.85471 -25.79046 -24.54286 -23.61871 -22.66955 -21.61214 -20.45774 -20.04239 -19.64476 -19.13041 -17.88474 -17.52663 -16.77758 -15.94775 -15.83641 -15.38229 -15.27724 -15.15862 -14.81688 -14.54028 -14.42925 -14.05031 -13.73237 -13.56083 -13.46164 -13.33900 -13.27904 -12.56918 -12.50222 -12.41718 -12.20885 -12.03087 -11.76602 -11.64513 -11.56166 -11.53824 -11.25858 -11.07822 -11.04049 -11.00456 -10.83822 -10.75633 -10.73063 -10.60958 -10.39517 -10.21763 -9.85151 -9.51134 -9.15069 -8.44869 -8.08019 -7.96012 -6.41672 -3.82636 2.44842 2.98600 3.17698 3.26390 3.32393 3.90974 4.03675 4.11702 4.16034 4.29035 4.39383 4.44072 4.48452 4.73790 4.80043 4.84768 4.87983 4.91625 4.99118 5.02532 5.11264 5.20518 5.23702 5.25830 5.26849 5.34635 5.44152 5.45134 5.54691 5.57412 5.63582 5.68399 5.70502 5.79383 5.80659 5.83229 5.87478 5.89926 5.97097 6.04186 6.04352 6.10329 6.15894 6.28623 6.45808 7.25266 7.34768 7.55044 7.65314 8.05961 8.06290 8.61216 9.17735 9.54392 10.05731 10.76012 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026642 B = 0.001570 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.705543 B =17832.341570 C =18097.561871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.072 4.072 4 H 0.087 0.913 5 C -0.121 4.121 6 C -0.123 4.123 7 C -0.113 4.113 8 C -0.115 4.115 9 H 0.102 0.898 10 C 0.521 3.479 11 O -0.540 6.540 12 N -0.716 5.716 13 C 0.121 3.879 14 H 0.113 0.887 15 C -0.137 4.137 16 C 0.062 3.938 17 H 0.075 0.925 18 N -0.654 5.654 19 C 0.049 3.951 20 C 0.441 3.559 21 O -0.585 6.585 22 N -0.564 5.564 23 C -0.300 4.300 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.901 5.901 27 Si 0.930 3.070 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.270 1.270 31 C -0.148 4.148 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.401 0.599 44 H 0.094 0.906 45 H 0.067 0.933 46 H 0.350 0.650 47 H 0.044 0.956 48 H 0.086 0.914 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.073 0.927 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.597 11.759 -17.079 29.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.090 4.090 4 H 0.106 0.894 5 C -0.159 4.159 6 C -0.161 4.161 7 C -0.151 4.151 8 C -0.136 4.136 9 H 0.120 0.880 10 C 0.308 3.692 11 O -0.416 6.416 12 N -0.367 5.367 13 C 0.016 3.984 14 H 0.131 0.869 15 C -0.176 4.176 16 C -0.049 4.049 17 H 0.093 0.907 18 N -0.287 5.287 19 C -0.083 4.083 20 C 0.226 3.774 21 O -0.469 6.469 22 N -0.200 5.200 23 C -0.430 4.430 24 H 0.121 0.879 25 C -0.179 4.179 26 N -0.543 5.543 27 Si 0.757 3.243 28 H -0.204 1.204 29 H -0.209 1.209 30 H -0.194 1.194 31 C -0.187 4.187 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.236 0.764 44 H 0.112 0.888 45 H 0.086 0.914 46 H 0.171 0.829 47 H 0.062 0.938 48 H 0.104 0.896 49 H 0.226 0.774 50 H 0.081 0.919 51 H 0.091 0.909 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -21.904 11.129 -17.257 30.024 hybrid contribution 1.117 0.245 0.897 1.453 sum -20.787 11.374 -16.360 28.795 Atomic orbital electron populations 1.21746 0.95772 1.01469 1.01731 1.21546 0.96092 0.95744 1.01962 1.21883 0.92415 0.96917 0.97816 0.89440 1.22251 0.98050 0.98693 0.96880 1.22115 0.95855 1.00130 0.98007 1.22318 0.99723 0.95356 0.97669 1.22418 0.98315 0.99908 0.92945 0.88006 1.20558 0.82371 0.75246 0.91067 1.90690 1.51063 1.49214 1.50657 1.46009 1.07317 1.74824 1.08525 1.22370 0.95548 0.97698 0.82799 0.86925 1.23568 0.97023 0.96433 1.00596 1.22802 0.90522 0.94373 0.97231 0.90727 1.60208 1.01839 1.34415 1.32194 1.21743 0.96887 0.98986 0.90721 1.19827 0.87981 0.84459 0.85130 1.90517 1.63934 1.62354 1.30087 1.41869 1.14916 1.49305 1.13929 1.19708 0.90156 1.32043 1.01053 0.87923 1.25264 1.00157 0.97574 0.94950 1.69613 1.38003 1.42777 1.03886 0.85852 0.81765 0.78228 0.78411 1.20434 1.20920 1.19419 1.23619 0.96324 0.98207 1.00552 0.92926 0.92643 0.92868 0.92219 0.91589 0.91524 0.91678 0.91540 0.91610 0.91130 0.90900 0.76437 0.88795 0.91404 0.82946 0.93803 0.89590 0.77447 0.91870 0.90879 0.88734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.79 37.16 0.36 -0.69 16 2 C -0.12 -0.90 5.32 -26.73 -0.14 -1.04 16 3 C -0.07 -0.55 1.93 -88.95 -0.17 -0.72 16 4 H 0.09 0.85 7.44 -51.93 -0.39 0.46 16 5 C -0.12 -0.71 5.69 -25.61 -0.15 -0.85 16 6 C -0.12 -0.64 6.80 -25.62 -0.17 -0.82 16 7 C -0.11 -0.66 6.26 -25.08 -0.16 -0.81 16 8 C -0.11 -0.84 2.71 -89.77 -0.24 -1.08 16 9 H 0.10 0.64 8.06 -51.93 -0.42 0.22 16 10 C 0.52 5.28 7.13 -10.98 -0.08 5.20 16 11 O -0.54 -7.49 15.33 5.55 0.09 -7.40 16 12 N -0.72 -6.28 5.35 -53.02 -0.28 -6.56 16 13 C 0.12 1.21 4.24 -67.12 -0.28 0.93 16 14 H 0.11 1.26 7.46 -51.93 -0.39 0.87 16 15 C -0.14 -1.58 7.68 -25.92 -0.20 -1.78 16 16 C 0.06 0.74 4.14 -66.90 -0.28 0.46 16 17 H 0.07 0.85 7.87 -51.93 -0.41 0.44 16 18 N -0.65 -10.24 6.18 -107.13 -0.66 -10.90 16 19 C 0.05 0.87 6.01 -4.97 -0.03 0.84 16 20 C 0.44 10.41 7.82 -10.99 -0.09 10.32 16 21 O -0.58 -15.83 15.78 5.54 0.09 -15.75 16 22 N -0.56 -14.35 5.29 -10.96 -0.06 -14.41 16 23 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 24 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 25 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 26 N -0.90 -24.60 13.05 55.50 0.72 -23.88 16 27 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 29 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 30 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 31 C -0.15 -1.40 7.40 -25.92 -0.19 -1.59 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.32 7.62 -51.93 -0.40 -0.08 16 35 H 0.06 0.41 7.95 -51.93 -0.41 -0.01 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.36 7.71 -51.93 -0.40 -0.04 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 41 H 0.07 0.47 8.04 -51.93 -0.42 0.05 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.40 2.66 8.73 -40.82 -0.36 2.31 16 44 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.35 5.59 8.25 -39.29 -0.32 5.27 16 47 H 0.04 0.69 8.13 -51.93 -0.42 0.27 16 48 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 49 H 0.39 9.56 7.90 -40.82 -0.32 9.23 16 50 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 51 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 52 H 0.09 0.87 8.12 -51.93 -0.42 0.45 16 LS Contribution 418.27 15.07 6.30 6.30 Total: -1.00 -32.63 418.27 -10.12 -42.75 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -9.23 Total: 13.48 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -2.06 Total: 0.30 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.28 Total: -55.75 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: 0.17 Total: -23.15 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -32.63 -10.12 -42.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265556145.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.574 kcal (2) G-P(sol) polarization free energy of solvation -32.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds