Wall clock time and date at job start Tue Mar 31 2020 20:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47393 * 2 1 4 4 H 1.09000 * 109.47220 * 54.80842 * 3 2 1 5 5 C 1.50699 * 109.47365 * 174.81025 * 3 2 1 6 6 O 1.21274 * 120.00365 * 112.92378 * 5 3 2 7 7 N 1.34781 * 119.99881 * 292.92157 * 5 3 2 8 8 C 1.46921 * 120.62946 * 356.57865 * 7 5 3 9 9 C 1.53193 * 108.77491 * 233.62775 * 8 7 5 10 10 C 1.53039 * 109.34107 * 305.38178 * 9 8 7 11 11 C 1.53034 * 109.53640 * 61.31413 * 10 9 8 12 12 H 1.08999 * 109.49549 * 58.65603 * 11 10 9 13 13 C 1.52999 * 109.49598 * 178.71616 * 11 10 9 14 14 N 1.46505 * 109.47254 * 294.93772 * 13 11 10 15 15 C 1.36937 * 120.00079 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99752 * 0.02562 * 15 14 13 17 17 C 1.38816 * 119.99735 * 179.97438 * 15 14 13 18 18 N 1.31611 * 120.00208 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99756 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47265 * 89.99802 * 19 17 15 21 21 H 1.48497 * 109.47182 * 210.00146 * 19 17 15 22 22 H 1.48507 * 109.47109 * 330.00304 * 19 17 15 23 23 C 1.46922 * 120.63158 * 176.60005 * 7 5 3 24 24 N 1.46494 * 109.47023 * 294.81040 * 3 2 1 25 25 C 1.46769 * 124.35087 * 120.00078 * 24 3 2 26 26 C 1.54484 * 105.47306 * 197.01564 * 25 24 3 27 27 C 1.54627 * 101.76558 * 334.58232 * 26 25 24 28 28 C 1.34425 * 124.34971 * 299.69869 * 24 3 2 29 29 O 1.21273 * 124.94300 * 359.57546 * 28 24 3 30 30 H 1.08999 * 109.46978 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46964 * 300.00154 * 1 2 3 32 32 H 1.09002 * 109.46536 * 60.00056 * 1 2 3 33 33 H 1.09010 * 109.47107 * 239.99667 * 2 1 3 34 34 H 1.09003 * 109.47278 * 119.99904 * 2 1 3 35 35 H 1.09002 * 109.59243 * 353.41797 * 8 7 5 36 36 H 1.09007 * 109.58595 * 113.83946 * 8 7 5 37 37 H 1.08993 * 109.49823 * 65.32199 * 9 8 7 38 38 H 1.09007 * 109.49565 * 185.38077 * 9 8 7 39 39 H 1.09004 * 109.43150 * 301.31384 * 10 9 8 40 40 H 1.08997 * 109.48546 * 181.35377 * 10 9 8 41 41 H 1.08997 * 109.47466 * 54.93570 * 13 11 10 42 42 H 1.08999 * 109.47208 * 174.93962 * 13 11 10 43 43 H 0.97005 * 119.99761 * 359.97438 * 14 13 11 44 44 H 0.96999 * 120.00465 * 179.97438 * 18 17 15 45 45 H 1.09004 * 109.58748 * 6.58245 * 23 7 5 46 46 H 1.08997 * 109.58598 * 246.16084 * 23 7 5 47 47 H 1.08997 * 110.24326 * 316.01009 * 25 24 3 48 48 H 1.08990 * 110.24710 * 78.01692 * 25 24 3 49 49 H 1.09003 * 110.97035 * 92.70231 * 26 25 24 50 50 H 1.08997 * 110.97031 * 216.42593 * 26 25 24 51 51 H 1.08999 * 110.48583 * 143.47642 * 27 26 25 52 52 H 1.09006 * 110.48544 * 265.98848 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6028 1.9825 0.8398 5 6 3.5416 1.4444 0.1285 6 8 4.2288 1.8249 -0.7954 7 7 4.1207 1.0233 1.2704 8 6 3.3011 0.6302 2.4247 9 6 3.7653 1.4218 3.6513 10 6 5.2688 1.2154 3.8486 11 6 6.0221 1.7370 2.6229 12 1 5.7971 2.7939 2.4801 13 6 7.5270 1.5594 2.8347 14 7 7.9668 2.4055 3.9469 15 6 9.2837 2.4132 4.3222 16 1 9.9982 1.7959 3.7980 17 6 9.7005 3.2153 5.3758 18 7 8.8300 3.9687 6.0136 19 14 11.4967 3.2253 5.8881 20 1 12.2225 4.2746 5.1282 21 1 11.5951 3.5097 7.3423 22 1 12.1007 1.8993 5.6011 23 6 5.5836 0.9490 1.3846 24 7 1.6564 2.0960 -1.2537 25 6 0.8119 3.2933 -1.3388 26 6 0.3283 3.3532 -2.8047 27 6 1.4479 2.5787 -3.5380 28 6 2.0375 1.6796 -2.4737 29 8 2.7483 0.7210 -2.6898 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.2534 0.8521 2.2216 36 1 3.4211 -0.4370 2.6116 37 1 3.5609 2.4815 3.4991 38 1 3.2305 1.0714 4.5342 39 1 5.4752 0.1528 3.9767 40 1 5.5971 1.7584 4.7349 41 1 7.7408 0.5159 3.0655 42 1 8.0580 1.8471 1.9274 43 1 7.3252 2.9608 4.4171 44 1 9.1211 4.5289 6.7500 45 1 6.0420 1.3812 0.4951 46 1 5.8897 -0.0921 1.4867 47 1 -0.0395 3.2030 -0.6642 48 1 1.3932 4.1829 -1.0968 49 1 -0.6326 2.8516 -2.9194 50 1 0.2722 4.3838 -3.1552 51 1 1.0315 1.9871 -4.3533 52 1 2.2042 3.2673 -3.9150 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265634641.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:47 Heat of formation + Delta-G solvation = -59.366775 kcal Electronic energy + Delta-G solvation = -30798.611687 eV Core-core repulsion = 26798.105232 eV Total energy + Delta-G solvation = -4000.506455 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.15733 -39.73754 -37.53658 -36.50168 -35.40452 -34.73766 -32.68574 -31.69299 -31.33132 -30.00186 -27.89091 -27.61356 -25.57436 -24.98117 -22.83282 -22.63474 -22.19645 -21.85480 -20.47647 -19.53530 -18.65060 -17.62895 -17.16461 -16.91490 -16.36116 -15.79063 -15.51358 -15.00487 -14.80805 -14.52689 -14.37739 -14.16295 -13.90299 -13.86821 -13.61236 -13.49675 -13.26841 -13.07930 -13.03991 -12.91317 -12.77753 -12.50850 -12.16381 -12.05684 -11.88087 -11.83134 -11.54435 -11.38977 -11.23824 -11.04559 -10.87800 -10.81111 -10.57465 -10.32898 -10.16889 -10.01708 -9.84603 -9.72208 -9.66199 -8.85419 -8.83351 -8.54300 -6.89449 -5.74909 -3.02901 2.43646 2.61544 2.65471 3.11717 3.45275 3.50419 3.51910 4.06262 4.14041 4.30858 4.45934 4.54818 4.55844 4.61333 4.71301 4.80227 4.89378 4.98163 5.00843 5.09435 5.11909 5.21250 5.24744 5.32053 5.34652 5.36735 5.47053 5.48842 5.57078 5.59306 5.62647 5.63056 5.73848 5.86412 5.86992 5.91343 6.02244 6.10807 6.18776 6.21743 6.28242 6.48015 6.58368 6.68203 6.82820 6.92577 6.96157 7.40685 7.72568 8.08585 8.24077 8.44357 9.55530 10.13513 10.48536 11.48216 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020579 B = 0.002389 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.258882 B =11716.903647 C =12180.469541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.146 3.854 4 H 0.110 0.890 5 C 0.503 3.497 6 O -0.518 6.518 7 N -0.608 5.608 8 C 0.104 3.896 9 C -0.135 4.135 10 C -0.111 4.111 11 C -0.106 4.106 12 H 0.072 0.928 13 C 0.160 3.840 14 N -0.730 5.730 15 C -0.237 4.237 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.935 5.935 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C 0.121 3.879 24 N -0.608 5.608 25 C 0.103 3.897 26 C -0.129 4.129 27 C -0.155 4.155 28 C 0.526 3.474 29 O -0.512 6.512 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.021 0.979 42 H 0.020 0.980 43 H 0.383 0.617 44 H 0.254 0.746 45 H 0.091 0.909 46 H 0.067 0.933 47 H 0.079 0.921 48 H 0.071 0.929 49 H 0.081 0.919 50 H 0.090 0.910 51 H 0.099 0.901 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.765 -4.718 -13.294 29.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.039 3.961 4 H 0.128 0.872 5 C 0.288 3.712 6 O -0.392 6.392 7 N -0.342 5.342 8 C -0.019 4.019 9 C -0.174 4.174 10 C -0.149 4.149 11 C -0.125 4.125 12 H 0.091 0.909 13 C 0.031 3.969 14 N -0.375 5.375 15 C -0.368 4.368 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.584 5.584 19 Si 0.738 3.262 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.001 4.001 24 N -0.344 5.344 25 C -0.020 4.020 26 C -0.167 4.167 27 C -0.195 4.195 28 C 0.313 3.687 29 O -0.386 6.386 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.039 0.961 42 H 0.038 0.962 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.109 0.891 46 H 0.085 0.915 47 H 0.097 0.903 48 H 0.090 0.910 49 H 0.100 0.900 50 H 0.109 0.891 51 H 0.117 0.883 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -24.812 -5.107 -13.865 28.878 hybrid contribution 0.852 0.411 0.734 1.198 sum -23.960 -4.695 -13.130 27.722 Atomic orbital electron populations 1.21707 0.94560 1.02093 1.01856 1.21979 0.97014 0.94191 1.04651 1.20829 0.92420 0.95690 0.87185 0.87233 1.20758 0.90386 0.77657 0.82364 1.90724 1.64344 1.45847 1.38296 1.48053 1.07507 1.65888 1.12742 1.21897 0.94452 0.99463 0.86058 1.21960 0.97894 1.00614 0.96895 1.21524 0.92817 1.01554 0.98973 1.21658 0.96921 1.00044 0.93888 0.90920 1.20588 0.90012 0.94548 0.91709 1.42345 1.07603 1.51007 1.36534 1.19247 0.85498 1.20418 1.11637 0.91195 1.24727 0.97752 0.99678 0.98940 1.69653 1.32892 1.30935 1.24931 0.86182 0.84867 0.77597 0.77521 1.21753 1.21802 1.20770 1.21625 0.78462 1.00437 0.99617 1.47935 1.51759 1.29394 1.05278 1.22109 0.94183 0.87691 0.97980 1.22565 0.98422 1.01942 0.93794 1.22322 0.99457 0.99622 0.98148 1.20700 0.79395 0.84585 0.83970 1.90714 1.35962 1.28399 1.83559 0.92190 0.92566 0.92586 0.89705 0.89898 0.90218 0.91092 0.91587 0.90749 0.92031 0.90217 0.96142 0.96208 0.78253 0.93573 0.89097 0.91460 0.90297 0.91038 0.90000 0.89132 0.88254 0.87835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.80 37.16 0.36 -0.57 16 2 C -0.14 -1.26 4.97 -26.73 -0.13 -1.40 16 3 C 0.15 1.50 1.82 -69.09 -0.13 1.37 16 4 H 0.11 0.84 7.08 -51.93 -0.37 0.47 16 5 C 0.50 7.28 6.80 -10.98 -0.07 7.21 16 6 O -0.52 -9.82 13.91 -13.32 -0.19 -10.01 16 7 N -0.61 -8.01 2.97 -172.77 -0.51 -8.52 16 8 C 0.10 1.01 4.93 -3.71 -0.02 0.99 16 9 C -0.14 -1.49 6.08 -26.61 -0.16 -1.65 16 10 C -0.11 -1.64 5.06 -26.69 -0.13 -1.78 16 11 C -0.11 -1.76 2.37 -90.51 -0.21 -1.98 16 12 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 13 C 0.16 3.30 5.65 -4.04 -0.02 3.28 16 14 N -0.73 -18.74 5.32 -59.91 -0.32 -19.06 16 15 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 16 H 0.07 1.95 7.83 -52.49 -0.41 1.53 16 17 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 18 N -0.94 -28.47 13.06 55.49 0.72 -27.75 16 19 Si 0.91 22.75 29.55 -169.99 -5.02 17.72 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 C 0.12 1.84 5.72 -3.72 -0.02 1.82 16 24 N -0.61 -6.20 2.14 -166.16 -0.35 -6.55 16 25 C 0.10 0.65 7.30 -3.12 -0.02 0.62 16 26 C -0.13 -0.61 7.18 -25.10 -0.18 -0.79 16 27 C -0.16 -1.23 6.86 -26.74 -0.18 -1.41 16 28 C 0.53 6.62 6.68 -10.85 -0.07 6.54 16 29 O -0.51 -8.83 15.09 -13.32 -0.20 -9.03 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.38 7.76 -51.93 -0.40 -0.02 16 33 H 0.08 1.04 6.67 -51.92 -0.35 0.69 16 34 H 0.08 0.66 5.94 -51.93 -0.31 0.35 16 35 H 0.08 0.57 5.00 -51.93 -0.26 0.31 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 1.40 7.16 -51.93 -0.37 1.02 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.38 10.23 6.85 -40.82 -0.28 9.95 16 44 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.09 1.58 7.00 -51.93 -0.36 1.21 16 46 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 49 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 51 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 52 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 399.94 15.07 6.03 6.03 Total: -1.00 -37.05 399.94 -10.10 -47.15 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -9.01 Total: 5.19 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -1.25 Total: 4.82 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: -0.46 Total: -61.88 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.39 Total: -19.03 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.05 -10.10 -47.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265634641.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.217 kcal (2) G-P(sol) polarization free energy of solvation -37.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds