Wall clock time and date at job start Tue Mar 31 2020 20:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47393 * 2 1 4 4 H 1.09000 * 109.47220 * 54.80842 * 3 2 1 5 5 C 1.50699 * 109.47365 * 174.81025 * 3 2 1 6 6 O 1.21274 * 120.00365 * 112.92378 * 5 3 2 7 7 N 1.34781 * 119.99881 * 292.92157 * 5 3 2 8 8 C 1.46921 * 120.62946 * 356.57865 * 7 5 3 9 9 C 1.53193 * 108.77491 * 233.62775 * 8 7 5 10 10 C 1.53039 * 109.34107 * 305.38178 * 9 8 7 11 11 C 1.53034 * 109.53640 * 61.31413 * 10 9 8 12 12 H 1.08999 * 109.49549 * 58.65603 * 11 10 9 13 13 C 1.52999 * 109.49598 * 178.71616 * 11 10 9 14 14 N 1.46505 * 109.47254 * 294.93772 * 13 11 10 15 15 C 1.36937 * 120.00079 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99752 * 0.02562 * 15 14 13 17 17 C 1.38816 * 119.99735 * 179.97438 * 15 14 13 18 18 N 1.31611 * 120.00208 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99756 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47265 * 89.99802 * 19 17 15 21 21 H 1.48497 * 109.47182 * 210.00146 * 19 17 15 22 22 H 1.48507 * 109.47109 * 330.00304 * 19 17 15 23 23 C 1.46922 * 120.63158 * 176.60005 * 7 5 3 24 24 N 1.46494 * 109.47023 * 294.81040 * 3 2 1 25 25 C 1.46769 * 124.35087 * 120.00078 * 24 3 2 26 26 C 1.54484 * 105.47306 * 197.01564 * 25 24 3 27 27 C 1.54627 * 101.76558 * 334.58232 * 26 25 24 28 28 C 1.34425 * 124.34971 * 299.69869 * 24 3 2 29 29 O 1.21273 * 124.94300 * 359.57546 * 28 24 3 30 30 H 1.08999 * 109.46978 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46964 * 300.00154 * 1 2 3 32 32 H 1.09002 * 109.46536 * 60.00056 * 1 2 3 33 33 H 1.09010 * 109.47107 * 239.99667 * 2 1 3 34 34 H 1.09003 * 109.47278 * 119.99904 * 2 1 3 35 35 H 1.09002 * 109.59243 * 353.41797 * 8 7 5 36 36 H 1.09007 * 109.58595 * 113.83946 * 8 7 5 37 37 H 1.08993 * 109.49823 * 65.32199 * 9 8 7 38 38 H 1.09007 * 109.49565 * 185.38077 * 9 8 7 39 39 H 1.09004 * 109.43150 * 301.31384 * 10 9 8 40 40 H 1.08997 * 109.48546 * 181.35377 * 10 9 8 41 41 H 1.08997 * 109.47466 * 54.93570 * 13 11 10 42 42 H 1.08999 * 109.47208 * 174.93962 * 13 11 10 43 43 H 0.97005 * 119.99761 * 359.97438 * 14 13 11 44 44 H 0.96999 * 120.00465 * 179.97438 * 18 17 15 45 45 H 1.09004 * 109.58748 * 6.58245 * 23 7 5 46 46 H 1.08997 * 109.58598 * 246.16084 * 23 7 5 47 47 H 1.08997 * 110.24326 * 316.01009 * 25 24 3 48 48 H 1.08990 * 110.24710 * 78.01692 * 25 24 3 49 49 H 1.09003 * 110.97035 * 92.70231 * 26 25 24 50 50 H 1.08997 * 110.97031 * 216.42593 * 26 25 24 51 51 H 1.08999 * 110.48583 * 143.47642 * 27 26 25 52 52 H 1.09006 * 110.48544 * 265.98848 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6028 1.9825 0.8398 5 6 3.5416 1.4444 0.1285 6 8 4.2288 1.8249 -0.7954 7 7 4.1207 1.0233 1.2704 8 6 3.3011 0.6302 2.4247 9 6 3.7653 1.4218 3.6513 10 6 5.2688 1.2154 3.8486 11 6 6.0221 1.7370 2.6229 12 1 5.7971 2.7939 2.4801 13 6 7.5270 1.5594 2.8347 14 7 7.9668 2.4055 3.9469 15 6 9.2837 2.4132 4.3222 16 1 9.9982 1.7959 3.7980 17 6 9.7005 3.2153 5.3758 18 7 8.8300 3.9687 6.0136 19 14 11.4967 3.2253 5.8881 20 1 12.2225 4.2746 5.1282 21 1 11.5951 3.5097 7.3423 22 1 12.1007 1.8993 5.6011 23 6 5.5836 0.9490 1.3846 24 7 1.6564 2.0960 -1.2537 25 6 0.8119 3.2933 -1.3388 26 6 0.3283 3.3532 -2.8047 27 6 1.4479 2.5787 -3.5380 28 6 2.0375 1.6796 -2.4737 29 8 2.7483 0.7210 -2.6898 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.2534 0.8521 2.2216 36 1 3.4211 -0.4370 2.6116 37 1 3.5609 2.4815 3.4991 38 1 3.2305 1.0714 4.5342 39 1 5.4752 0.1528 3.9767 40 1 5.5971 1.7584 4.7349 41 1 7.7408 0.5159 3.0655 42 1 8.0580 1.8471 1.9274 43 1 7.3252 2.9608 4.4171 44 1 9.1211 4.5289 6.7500 45 1 6.0420 1.3812 0.4951 46 1 5.8897 -0.0921 1.4867 47 1 -0.0395 3.2030 -0.6642 48 1 1.3932 4.1829 -1.0968 49 1 -0.6326 2.8516 -2.9194 50 1 0.2722 4.3838 -3.1552 51 1 1.0315 1.9871 -4.3533 52 1 2.2042 3.2673 -3.9150 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265634641.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:46 Heat of formation + Delta-G solvation = -83.398643 kcal Electronic energy + Delta-G solvation = -30799.653787 eV Core-core repulsion = 26798.105232 eV Total energy + Delta-G solvation = -4001.548555 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.05839 -40.73446 -38.80355 -37.41362 -36.71628 -35.90861 -34.28898 -32.97270 -31.95768 -31.73426 -28.67752 -28.38119 -27.12780 -26.18350 -24.57657 -23.41462 -22.98989 -22.69760 -21.72154 -20.69216 -19.58682 -19.22161 -18.49609 -17.84574 -17.15132 -16.91422 -16.60432 -16.30812 -16.04472 -15.78033 -15.51574 -15.38873 -15.13467 -15.09165 -14.66689 -14.60261 -14.27296 -14.12217 -13.91244 -13.80306 -13.70021 -13.49339 -13.39019 -13.25073 -12.92481 -12.81104 -12.75633 -12.41107 -12.19271 -12.16796 -12.11431 -12.05729 -11.86301 -11.78364 -11.72102 -11.56486 -11.40657 -10.96065 -10.89975 -10.63566 -9.69429 -9.65510 -9.03476 -7.98263 -5.27261 1.44890 1.47019 1.51482 1.55499 1.56226 1.85812 2.18689 2.53810 3.30846 3.34869 3.50822 3.66755 3.73762 3.76157 3.82121 3.88917 3.91547 4.03240 4.07057 4.20819 4.26396 4.34421 4.37810 4.38756 4.47507 4.53856 4.64429 4.68597 4.69637 4.73944 4.78706 4.81736 4.84752 4.87876 4.93462 5.05696 5.10533 5.16253 5.17095 5.20814 5.23973 5.36728 5.38592 5.42955 5.46845 5.48755 5.59810 6.19076 6.23975 6.36852 7.08283 7.29595 7.30509 8.04417 8.30058 9.25297 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020579 B = 0.002389 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.258882 B =11716.903647 C =12180.469541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.146 3.854 4 H 0.148 0.852 5 C 0.492 3.508 6 O -0.574 6.574 7 N -0.606 5.606 8 C 0.102 3.898 9 C -0.127 4.127 10 C -0.107 4.107 11 C -0.090 4.090 12 H 0.051 0.949 13 C 0.159 3.841 14 N -0.740 5.740 15 C -0.249 4.249 16 H 0.072 0.928 17 C -0.073 4.073 18 N -0.968 5.968 19 Si 0.975 3.025 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.270 1.270 23 C 0.129 3.871 24 N -0.608 5.608 25 C 0.094 3.906 26 C -0.114 4.114 27 C -0.155 4.155 28 C 0.507 3.493 29 O -0.574 6.574 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.028 0.972 42 H 0.008 0.992 43 H 0.375 0.625 44 H 0.253 0.747 45 H 0.061 0.939 46 H 0.079 0.921 47 H 0.113 0.887 48 H 0.068 0.932 49 H 0.102 0.898 50 H 0.112 0.888 51 H 0.108 0.892 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.831 -4.971 -12.459 31.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 C 0.039 3.961 4 H 0.165 0.835 5 C 0.280 3.720 6 O -0.453 6.453 7 N -0.339 5.339 8 C -0.020 4.020 9 C -0.165 4.165 10 C -0.145 4.145 11 C -0.110 4.110 12 H 0.069 0.931 13 C 0.031 3.969 14 N -0.383 5.383 15 C -0.381 4.381 16 H 0.090 0.910 17 C -0.266 4.266 18 N -0.618 5.618 19 Si 0.803 3.197 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.195 1.195 23 C 0.006 3.994 24 N -0.342 5.342 25 C -0.027 4.027 26 C -0.151 4.151 27 C -0.195 4.195 28 C 0.296 3.704 29 O -0.453 6.453 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.115 0.885 35 H 0.135 0.865 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.123 0.877 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.046 0.954 42 H 0.025 0.975 43 H 0.208 0.792 44 H 0.061 0.939 45 H 0.079 0.921 46 H 0.097 0.903 47 H 0.131 0.869 48 H 0.086 0.914 49 H 0.121 0.879 50 H 0.131 0.869 51 H 0.127 0.873 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -27.933 -5.360 -13.015 31.279 hybrid contribution 1.840 0.482 0.445 1.954 sum -26.092 -4.878 -12.570 29.370 Atomic orbital electron populations 1.21677 0.92006 1.02838 1.02970 1.21941 0.99037 0.92813 1.03403 1.21024 0.89154 0.97276 0.88620 0.83499 1.21708 0.92322 0.76350 0.81655 1.90699 1.65965 1.48363 1.40238 1.48166 1.06659 1.65299 1.13792 1.22220 0.95641 1.00307 0.83786 1.21918 0.94880 1.00803 0.98860 1.21458 0.95574 1.01251 0.96199 1.21443 0.94481 0.99165 0.95867 0.93094 1.20705 0.92762 0.93824 0.89570 1.42501 1.06775 1.51542 1.37525 1.19625 0.86753 1.20122 1.11573 0.90981 1.25564 1.02046 0.99706 0.99257 1.69804 1.34788 1.31804 1.25442 0.85126 0.79795 0.77933 0.76813 1.21558 1.21723 1.19492 1.21327 0.80445 1.00356 0.97304 1.48166 1.51327 1.30063 1.04603 1.22457 0.94544 0.85818 0.99871 1.22611 0.97718 1.02866 0.91951 1.22373 1.00445 0.99180 0.97498 1.21572 0.78704 0.84278 0.85809 1.90666 1.38729 1.31182 1.84716 0.91729 0.89850 0.92960 0.93650 0.88524 0.86525 0.89182 0.92131 0.87697 0.91218 0.93297 0.95446 0.97453 0.79192 0.93862 0.92071 0.90288 0.86924 0.91393 0.87945 0.86934 0.87337 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.80 71.98 0.71 -0.57 16 2 C -0.13 -2.14 4.97 30.59 0.15 -1.99 16 3 C 0.15 2.72 1.82 44.25 0.08 2.80 16 4 H 0.15 1.59 7.08 -2.39 -0.02 1.57 16 5 C 0.49 14.27 6.80 87.66 0.60 14.87 16 6 O -0.57 -23.04 13.91 15.04 0.21 -22.83 16 7 N -0.61 -15.53 2.97 -818.92 -2.43 -17.97 16 8 C 0.10 1.63 4.93 86.36 0.43 2.05 16 9 C -0.13 -2.45 6.08 30.67 0.19 -2.26 16 10 C -0.11 -3.10 5.06 30.62 0.15 -2.95 16 11 C -0.09 -3.09 2.37 -10.72 -0.03 -3.12 16 12 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 13 C 0.16 6.79 5.65 86.38 0.49 7.28 16 14 N -0.74 -39.16 5.32 -343.44 -1.83 -40.99 16 15 C -0.25 -14.43 9.99 84.03 0.84 -13.59 16 16 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 17 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 18 N -0.97 -59.92 13.06 21.65 0.28 -59.63 16 19 Si 0.97 47.11 29.55 68.60 2.03 49.14 16 20 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 21 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 22 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 23 C 0.13 4.05 5.72 86.36 0.49 4.54 16 24 N -0.61 -11.61 2.14 -798.21 -1.71 -13.31 16 25 C 0.09 0.89 7.30 86.83 0.63 1.53 16 26 C -0.11 -0.72 7.18 31.65 0.23 -0.50 16 27 C -0.15 -2.35 6.86 30.59 0.21 -2.14 16 28 C 0.51 13.03 6.68 87.90 0.59 13.62 16 29 O -0.57 -21.18 15.09 15.05 0.23 -20.95 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.05 0.54 7.76 -2.39 -0.02 0.52 16 33 H 0.04 1.12 6.67 -2.38 -0.02 1.11 16 34 H 0.10 1.23 5.94 -2.39 -0.01 1.21 16 35 H 0.12 1.06 5.00 -2.39 -0.01 1.05 16 36 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 39 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 40 H 0.05 1.73 7.16 -2.39 -0.02 1.71 16 41 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.38 20.80 6.85 -92.70 -0.64 20.17 16 44 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 45 H 0.06 2.29 7.00 -2.39 -0.02 2.27 16 46 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 48 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 50 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 51 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 52 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -87.36 399.94 3.27 -84.09 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.27 Total: 26.71 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 6.22 Total: 15.74 kcal Atomic # 7 Polarization: -126.22 SS G_CDS: -5.68 Total: -131.90 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: 0.44 Total: -43.78 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -87.36 3.27 -84.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265634641.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.689 kcal (2) G-P(sol) polarization free energy of solvation -87.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds