Wall clock time and date at job start Tue Mar 31 2020 20:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46966 * 2 1 4 4 H 1.08994 * 109.47178 * 54.93461 * 3 2 1 5 5 C 1.50703 * 109.47066 * 174.94031 * 3 2 1 6 6 O 1.21282 * 120.00174 * 96.25037 * 5 3 2 7 7 N 1.34777 * 119.99852 * 276.24844 * 5 3 2 8 8 C 1.46918 * 120.62995 * 5.08083 * 7 5 3 9 9 C 1.53189 * 108.78125 * 126.36428 * 8 7 5 10 10 C 1.53042 * 109.31000 * 54.63068 * 9 8 7 11 11 C 1.53037 * 109.54057 * 298.63911 * 10 9 8 12 12 H 1.09007 * 109.49564 * 301.38149 * 11 10 9 13 13 C 1.52999 * 109.50206 * 181.31910 * 11 10 9 14 14 N 1.46496 * 109.47172 * 64.99716 * 13 11 10 15 15 C 1.36937 * 120.00073 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00057 * 0.02562 * 15 14 13 17 17 C 1.38811 * 120.00238 * 179.97438 * 15 14 13 18 18 N 1.31616 * 120.00020 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00196 * 179.97438 * 17 15 14 20 20 H 1.48511 * 109.46942 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47064 * 120.00292 * 19 17 15 22 22 H 1.48496 * 109.47444 * 240.00660 * 19 17 15 23 23 C 1.46928 * 120.62973 * 184.79071 * 7 5 3 24 24 N 1.46504 * 109.47015 * 294.93781 * 3 2 1 25 25 C 1.46758 * 124.34960 * 119.99973 * 24 3 2 26 26 C 1.54484 * 105.47242 * 162.98390 * 25 24 3 27 27 C 1.54630 * 101.76193 * 25.42085 * 26 25 24 28 28 C 1.34428 * 124.34737 * 300.00326 * 24 3 2 29 29 O 1.21274 * 124.94148 * 0.45371 * 28 24 3 30 30 H 1.09000 * 109.47362 * 60.00670 * 1 2 3 31 31 H 1.09000 * 109.47142 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47162 * 300.00605 * 1 2 3 33 33 H 1.08994 * 109.47115 * 239.99866 * 2 1 3 34 34 H 1.09000 * 109.46838 * 119.99380 * 2 1 3 35 35 H 1.09011 * 109.58736 * 246.15389 * 8 7 5 36 36 H 1.09004 * 109.59072 * 6.57511 * 8 7 5 37 37 H 1.08999 * 109.50289 * 174.58072 * 9 8 7 38 38 H 1.08997 * 109.49925 * 294.65045 * 9 8 7 39 39 H 1.09001 * 109.45998 * 58.65736 * 10 9 8 40 40 H 1.08998 * 109.45941 * 178.61618 * 10 9 8 41 41 H 1.09000 * 109.47493 * 185.00094 * 13 11 10 42 42 H 1.09001 * 109.46595 * 305.00082 * 13 11 10 43 43 H 0.96999 * 120.00256 * 0.02562 * 14 13 11 44 44 H 0.96995 * 119.99959 * 179.97438 * 18 17 15 45 45 H 1.09006 * 109.58504 * 353.42424 * 23 7 5 46 46 H 1.08995 * 109.58273 * 113.84494 * 23 7 5 47 47 H 1.08999 * 110.24852 * 43.98863 * 25 24 3 48 48 H 1.09004 * 110.24842 * 281.98421 * 25 24 3 49 49 H 1.08997 * 110.97300 * 267.29993 * 26 25 24 50 50 H 1.09004 * 111.00129 * 143.54918 * 26 25 24 51 51 H 1.08996 * 110.48870 * 93.88483 * 27 26 25 52 52 H 1.09005 * 110.48112 * 216.51921 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6045 1.9818 0.8411 5 6 3.5418 1.4444 0.1253 6 8 4.2331 1.5288 -0.8676 7 7 4.1167 1.3523 1.3408 8 6 3.2979 1.1382 2.5418 9 6 3.8358 -0.0831 3.2940 10 6 5.3271 0.1129 3.5766 11 6 6.0865 0.2386 2.2539 12 1 5.9252 -0.6579 1.6552 13 6 7.5813 0.4016 2.5367 14 7 8.0955 -0.8183 3.1640 15 6 9.4174 -0.9051 3.5106 16 1 10.0809 -0.0741 3.3219 17 6 9.9045 -2.0608 4.1055 18 7 9.0959 -3.0734 4.3360 19 14 11.7080 -2.1795 4.5776 20 1 12.3988 -0.9160 4.2148 21 1 11.8228 -2.4033 6.0412 22 1 12.3359 -3.3133 3.8528 23 6 5.5746 1.4580 1.4893 24 7 1.6536 2.0970 -1.2525 25 6 0.8089 3.2942 -1.3349 26 6 1.0318 3.8590 -2.7554 27 6 1.4566 2.5929 -3.5349 28 6 2.0274 1.6780 -2.4739 29 8 2.7205 0.7074 -2.6933 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 3.3545 2.0171 3.1842 36 1 2.2623 0.9615 2.2514 37 1 3.2988 -0.1960 4.2358 38 1 3.6947 -0.9764 2.6855 39 1 5.4691 1.0197 4.1645 40 1 5.7068 -0.7438 4.1334 41 1 8.1108 0.5799 1.6008 42 1 7.7340 1.2472 3.2074 43 1 7.4996 -1.5646 3.3339 44 1 9.4364 -3.8811 4.7513 45 1 6.0407 1.4922 0.5045 46 1 5.8207 2.3634 2.0439 47 1 1.1156 4.0247 -0.5862 48 1 -0.2387 3.0271 -1.1953 49 1 1.8272 4.6042 -2.7586 50 1 0.1089 4.2747 -3.1598 51 1 0.5925 2.1310 -4.0123 52 1 2.2171 2.8386 -4.2761 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265634642.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:50 Heat of formation + Delta-G solvation = -84.071073 kcal Electronic energy + Delta-G solvation = -30850.072968 eV Core-core repulsion = 26848.495255 eV Total energy + Delta-G solvation = -4001.577713 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.03165 -40.71886 -38.80667 -37.38745 -36.67914 -35.89946 -34.32637 -32.97260 -31.93476 -31.76817 -28.67860 -28.36795 -27.12571 -26.18814 -24.59630 -23.23210 -23.14571 -22.69780 -21.72484 -20.71902 -19.43851 -19.23763 -18.39825 -17.86886 -17.42402 -16.91144 -16.54206 -16.19035 -15.95991 -15.63805 -15.57528 -15.48364 -15.15857 -15.01777 -14.66593 -14.56539 -14.41579 -14.18875 -13.81930 -13.81361 -13.63847 -13.55342 -13.36075 -13.23845 -12.88990 -12.82981 -12.75960 -12.40278 -12.17078 -12.14770 -12.11056 -12.01221 -11.92634 -11.82558 -11.74545 -11.58680 -11.40759 -10.97528 -10.92608 -10.55779 -9.70500 -9.58567 -9.04252 -7.98874 -5.28186 1.44131 1.45019 1.45845 1.55849 1.59824 1.91521 2.24414 2.53158 3.31631 3.34534 3.53115 3.66365 3.73236 3.77124 3.84578 3.86019 3.92695 4.03562 4.10298 4.19581 4.25884 4.33676 4.37639 4.38013 4.45217 4.54883 4.64785 4.68837 4.71211 4.73851 4.77278 4.81244 4.85750 4.89618 4.92293 5.03104 5.10711 5.14807 5.15840 5.21106 5.25309 5.34435 5.38403 5.43482 5.47373 5.48514 5.62225 6.22361 6.23281 6.38326 7.10820 7.29444 7.34801 8.03832 8.28642 9.25067 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021358 B = 0.002410 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.667271 B =11617.061623 C =12062.809969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.135 4.135 3 C 0.151 3.849 4 H 0.153 0.847 5 C 0.489 3.511 6 O -0.568 6.568 7 N -0.607 5.607 8 C 0.103 3.897 9 C -0.129 4.129 10 C -0.105 4.105 11 C -0.094 4.094 12 H 0.041 0.959 13 C 0.160 3.840 14 N -0.742 5.742 15 C -0.247 4.247 16 H 0.074 0.926 17 C -0.076 4.076 18 N -0.970 5.970 19 Si 0.976 3.024 20 H -0.267 1.267 21 H -0.288 1.288 22 H -0.294 1.294 23 C 0.130 3.870 24 N -0.612 5.612 25 C 0.098 3.902 26 C -0.120 4.120 27 C -0.153 4.153 28 C 0.501 3.499 29 O -0.569 6.569 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.039 0.961 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.050 0.950 39 H 0.076 0.924 40 H 0.045 0.955 41 H 0.007 0.993 42 H 0.033 0.967 43 H 0.374 0.626 44 H 0.252 0.748 45 H 0.059 0.941 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.104 0.896 49 H 0.076 0.924 50 H 0.125 0.875 51 H 0.121 0.879 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.247 18.260 -7.073 35.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.173 4.173 3 C 0.044 3.956 4 H 0.170 0.830 5 C 0.276 3.724 6 O -0.446 6.446 7 N -0.341 5.341 8 C -0.018 4.018 9 C -0.167 4.167 10 C -0.143 4.143 11 C -0.114 4.114 12 H 0.059 0.941 13 C 0.033 3.967 14 N -0.385 5.385 15 C -0.378 4.378 16 H 0.092 0.908 17 C -0.268 4.268 18 N -0.621 5.621 19 Si 0.805 3.195 20 H -0.191 1.191 21 H -0.215 1.215 22 H -0.222 1.222 23 C 0.007 3.993 24 N -0.346 5.346 25 C -0.023 4.023 26 C -0.158 4.158 27 C -0.193 4.193 28 C 0.291 3.709 29 O -0.447 6.447 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.058 0.942 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.131 0.869 37 H 0.124 0.876 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.064 0.936 41 H 0.025 0.975 42 H 0.051 0.949 43 H 0.206 0.794 44 H 0.061 0.939 45 H 0.077 0.923 46 H 0.107 0.893 47 H 0.111 0.889 48 H 0.122 0.878 49 H 0.095 0.905 50 H 0.143 0.857 51 H 0.139 0.861 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -28.348 17.880 -7.649 34.378 hybrid contribution 1.817 -1.230 0.073 2.196 sum -26.531 16.650 -7.576 32.226 Atomic orbital electron populations 1.21658 0.91690 1.02669 1.03180 1.21858 0.99219 0.93606 1.02665 1.21012 0.89028 0.96714 0.88871 0.82955 1.21765 0.92351 0.75772 0.82481 1.90754 1.65729 1.50252 1.37844 1.48238 1.07095 1.71390 1.07338 1.22162 0.95223 0.99098 0.85353 1.21922 0.95112 0.97938 1.01777 1.21443 0.95317 1.02266 0.95251 1.21398 0.94609 0.97705 0.97668 0.94083 1.20709 0.92073 0.89296 0.94671 1.42539 1.07697 1.15354 1.72912 1.19677 0.87213 0.99503 1.31444 0.90764 1.25604 1.02385 0.96243 1.02607 1.69826 1.35929 1.05899 1.50396 0.85033 0.79710 0.77536 0.77230 1.19098 1.21503 1.22152 1.21247 0.80401 0.97607 1.00075 1.48222 1.51342 1.30636 1.04416 1.22484 0.95492 0.85169 0.99167 1.22634 1.04456 0.95446 0.93235 1.22370 1.03216 0.96655 0.97025 1.21670 0.78485 0.84895 0.85899 1.90711 1.38730 1.30754 1.84503 0.92707 0.92246 0.89419 0.94181 0.89732 0.88215 0.86877 0.87608 0.93090 0.90560 0.93634 0.97539 0.94915 0.79354 0.93917 0.92265 0.89296 0.88856 0.87818 0.90494 0.85659 0.86073 0.89135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 9.80 71.98 0.71 -0.82 16 2 C -0.13 -2.58 5.01 30.59 0.15 -2.43 16 3 C 0.15 2.78 1.80 44.25 0.08 2.86 16 4 H 0.15 1.35 6.76 -2.39 -0.02 1.34 16 5 C 0.49 14.08 6.85 87.66 0.60 14.68 16 6 O -0.57 -23.08 13.45 17.80 0.24 -22.84 16 7 N -0.61 -15.22 2.98 -819.74 -2.44 -17.66 16 8 C 0.10 1.59 5.85 86.36 0.51 2.10 16 9 C -0.13 -2.65 6.08 30.67 0.19 -2.46 16 10 C -0.11 -3.10 5.06 30.62 0.15 -2.95 16 11 C -0.09 -3.32 2.36 -10.86 -0.03 -3.35 16 12 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 13 C 0.16 6.89 5.66 86.38 0.49 7.37 16 14 N -0.74 -39.92 5.32 -343.46 -1.83 -41.75 16 15 C -0.25 -14.43 9.99 84.03 0.84 -13.59 16 16 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 17 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 18 N -0.97 -61.16 13.06 21.65 0.28 -60.88 16 19 Si 0.98 47.64 29.55 68.60 2.03 49.67 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 22 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 23 C 0.13 3.98 5.70 86.22 0.49 4.47 16 24 N -0.61 -11.14 2.23 -798.20 -1.78 -12.92 16 25 C 0.10 0.69 7.30 86.83 0.63 1.32 16 26 C -0.12 -0.79 7.18 31.65 0.23 -0.57 16 27 C -0.15 -2.24 6.86 30.59 0.21 -2.03 16 28 C 0.50 13.02 6.77 87.89 0.60 13.62 16 29 O -0.57 -22.14 14.59 17.83 0.26 -21.88 16 30 H 0.05 0.63 7.75 -2.39 -0.02 0.62 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.04 1.17 6.62 -2.39 -0.02 1.15 16 34 H 0.08 1.50 7.01 -2.39 -0.02 1.48 16 35 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.11 1.03 4.81 -2.38 -0.01 1.02 16 37 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.04 1.66 7.15 -2.39 -0.02 1.64 16 41 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 42 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 43 H 0.37 21.29 6.85 -92.71 -0.64 20.66 16 44 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 45 H 0.06 2.19 7.00 -2.38 -0.02 2.17 16 46 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 47 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.10 0.16 8.14 -2.38 -0.02 0.14 16 49 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.13 0.00 8.14 -2.39 -0.02 -0.02 16 51 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 52 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -90.70 400.64 3.34 -87.36 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.27 Total: 26.74 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 6.31 Total: 14.16 kcal Atomic # 7 Polarization: -127.43 SS G_CDS: -5.77 Total: -133.20 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: 0.50 Total: -44.72 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -90.70 3.34 -87.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265634642.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.289 kcal (2) G-P(sol) polarization free energy of solvation -90.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds