Wall clock time and date at job start Tue Mar 31 2020 20:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47041 * 2 1 4 4 H 1.08991 * 109.47870 * 304.84960 * 3 2 1 5 5 C 1.50706 * 109.46825 * 184.84398 * 3 2 1 6 6 O 1.21274 * 120.00059 * 262.62354 * 5 3 2 7 7 N 1.34773 * 119.99753 * 82.63247 * 5 3 2 8 8 C 1.46930 * 120.63319 * 5.15658 * 7 5 3 9 9 C 1.53194 * 108.77640 * 233.59175 * 8 7 5 10 10 C 1.53042 * 109.30975 * 305.36530 * 9 8 7 11 11 C 1.53034 * 109.54152 * 61.36482 * 10 9 8 12 12 H 1.09002 * 109.49889 * 58.61903 * 11 10 9 13 13 C 1.53004 * 109.50042 * 178.68137 * 11 10 9 14 14 N 1.46500 * 109.47138 * 295.00254 * 13 11 10 15 15 C 1.36929 * 119.99981 * 179.97438 * 14 13 11 16 16 H 1.08007 * 120.00073 * 0.02562 * 15 14 13 17 17 C 1.38815 * 120.00131 * 180.02562 * 15 14 13 18 18 N 1.31618 * 119.99959 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00173 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46989 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47269 * 119.99485 * 19 17 15 22 22 H 1.48492 * 109.47019 * 239.99809 * 19 17 15 23 23 C 1.46925 * 120.62986 * 184.88034 * 7 5 3 24 24 N 1.46508 * 109.46699 * 64.85004 * 3 2 1 25 25 C 1.46764 * 124.34547 * 239.71959 * 24 3 2 26 26 C 1.54656 * 105.38086 * 162.85658 * 25 24 3 27 27 C 1.54633 * 101.68577 * 25.76425 * 26 25 24 28 28 C 1.34412 * 124.34985 * 60.02268 * 24 3 2 29 29 O 1.21284 * 124.94623 * 0.42983 * 28 24 3 30 30 H 1.08994 * 109.47201 * 299.99660 * 1 2 3 31 31 H 1.08999 * 109.46909 * 59.99801 * 1 2 3 32 32 H 1.08997 * 109.47446 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47190 * 120.00641 * 2 1 3 34 34 H 1.09005 * 109.46760 * 240.00119 * 2 1 3 35 35 H 1.09002 * 109.58489 * 353.37668 * 8 7 5 36 36 H 1.08990 * 109.58505 * 113.80084 * 8 7 5 37 37 H 1.09002 * 109.49889 * 65.31319 * 9 8 7 38 38 H 1.08995 * 109.49611 * 185.38212 * 9 8 7 39 39 H 1.09002 * 109.45589 * 181.38764 * 10 9 8 40 40 H 1.09000 * 109.45632 * 301.35551 * 10 9 8 41 41 H 1.09004 * 109.46567 * 54.99954 * 13 11 10 42 42 H 1.08993 * 109.46890 * 174.99765 * 13 11 10 43 43 H 0.97002 * 119.99846 * 0.02562 * 14 13 11 44 44 H 0.97001 * 119.99910 * 180.02562 * 18 17 15 45 45 H 1.08997 * 109.59025 * 246.20102 * 23 7 5 46 46 H 1.09007 * 109.58585 * 6.62631 * 23 7 5 47 47 H 1.08999 * 110.24405 * 281.98497 * 25 24 3 48 48 H 1.08998 * 110.24618 * 43.98443 * 25 24 3 49 49 H 1.09007 * 111.19127 * 267.59435 * 26 25 24 50 50 H 1.09001 * 110.82657 * 143.77614 * 26 25 24 51 51 H 1.08994 * 110.48551 * 216.30815 * 27 26 25 52 52 H 1.09008 * 110.47999 * 93.66504 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6076 1.9808 -0.8432 5 6 3.5423 1.4441 -0.1200 6 8 4.2298 1.5502 0.8734 7 7 4.1216 1.3278 -1.3313 8 6 3.3056 1.3119 -2.5530 9 6 3.6608 0.0637 -3.3671 10 6 5.1701 0.0362 -3.6188 11 6 5.9110 -0.0323 -2.2815 12 1 5.5977 -0.9232 -1.7373 13 6 7.4186 -0.0928 -2.5354 14 7 7.7478 -1.3427 -3.2250 15 6 9.0468 -1.6187 -3.5591 16 1 9.8286 -0.9151 -3.3138 17 6 9.3587 -2.8027 -4.2131 18 7 8.4060 -3.6604 -4.5115 19 14 11.1308 -3.1795 -4.6682 20 1 12.0039 -2.0631 -4.2247 21 1 11.5566 -4.4363 -4.0016 22 1 11.2406 -3.3383 -6.1405 23 6 5.5817 1.2205 -1.4555 24 7 1.6493 2.0985 1.2504 25 6 0.8090 3.2992 1.3280 26 6 0.3122 3.3584 2.7914 27 6 1.4280 2.5857 3.5324 28 6 2.0191 1.6813 2.4734 29 8 2.7244 0.7200 2.6958 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 2.2490 1.2859 -2.2864 36 1 3.5138 2.2044 -3.1430 37 1 3.3682 -0.8278 -2.8123 38 1 3.1328 0.0887 -4.3203 39 1 5.4222 -0.8381 -4.2189 40 1 5.4658 0.9400 -4.1517 41 1 7.7170 0.7533 -3.1545 42 1 7.9491 -0.0520 -1.5842 43 1 7.0456 -1.9744 -3.4457 44 1 8.6241 -4.4880 -4.9682 45 1 5.9717 2.1057 -1.9579 46 1 6.0274 1.1340 -0.4645 47 1 1.3959 4.1863 1.0899 48 1 -0.0374 3.2120 0.6468 49 1 -0.6492 2.8565 2.9018 50 1 0.2544 4.3896 3.1397 51 1 1.0074 1.9957 4.3466 52 1 2.1832 3.2752 3.9101 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265634643.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:53 Heat of formation + Delta-G solvation = -83.310136 kcal Electronic energy + Delta-G solvation = -30865.920596 eV Core-core repulsion = 26864.375879 eV Total energy + Delta-G solvation = -4001.544717 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.02705 -40.70515 -38.79185 -37.38909 -36.67273 -35.86379 -34.32018 -32.96070 -31.95684 -31.74948 -28.67266 -28.35069 -27.12384 -26.17039 -24.61168 -23.22841 -23.15299 -22.68996 -21.71631 -20.70593 -19.43431 -19.23726 -18.55355 -17.84085 -17.16017 -16.88119 -16.49099 -16.38667 -15.99989 -15.75254 -15.50896 -15.44171 -15.11450 -15.08109 -14.66647 -14.57808 -14.34816 -14.16028 -13.84540 -13.79255 -13.64103 -13.51185 -13.38390 -13.22741 -12.92431 -12.83137 -12.74196 -12.39697 -12.17017 -12.14232 -12.11175 -12.02792 -11.95057 -11.79375 -11.74523 -11.57602 -11.40637 -10.97458 -10.91490 -10.55975 -9.67251 -9.61923 -9.04107 -7.98856 -5.28016 1.44187 1.45781 1.47667 1.55815 1.59782 1.86895 2.25168 2.53165 3.33218 3.34745 3.50460 3.67056 3.73077 3.76030 3.83580 3.86450 3.93430 4.04158 4.09804 4.20533 4.26901 4.34321 4.36560 4.38824 4.44694 4.56098 4.64464 4.70224 4.71854 4.73686 4.75388 4.81924 4.85756 4.89121 4.93052 5.02974 5.12477 5.14474 5.16694 5.21576 5.26295 5.33546 5.38217 5.43356 5.47445 5.49276 5.62368 6.22278 6.23367 6.38310 7.10484 7.29638 7.34785 8.03894 8.28959 9.25005 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022101 B = 0.002400 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.584979 B =11661.446415 C =12030.685310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.132 4.132 3 C 0.150 3.850 4 H 0.154 0.846 5 C 0.489 3.511 6 O -0.568 6.568 7 N -0.607 5.607 8 C 0.103 3.897 9 C -0.129 4.129 10 C -0.106 4.106 11 C -0.093 4.093 12 H 0.044 0.956 13 C 0.159 3.841 14 N -0.741 5.741 15 C -0.247 4.247 16 H 0.074 0.926 17 C -0.076 4.076 18 N -0.969 5.969 19 Si 0.976 3.024 20 H -0.267 1.267 21 H -0.294 1.294 22 H -0.288 1.288 23 C 0.131 3.869 24 N -0.611 5.611 25 C 0.096 3.904 26 C -0.114 4.114 27 C -0.155 4.155 28 C 0.501 3.499 29 O -0.570 6.570 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.038 0.962 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.054 0.946 38 H 0.105 0.895 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.031 0.969 42 H 0.006 0.994 43 H 0.375 0.625 44 H 0.252 0.748 45 H 0.086 0.914 46 H 0.058 0.942 47 H 0.077 0.923 48 H 0.113 0.887 49 H 0.098 0.902 50 H 0.115 0.885 51 H 0.103 0.897 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.469 20.172 7.552 34.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.171 4.171 3 C 0.043 3.957 4 H 0.171 0.829 5 C 0.276 3.724 6 O -0.446 6.446 7 N -0.341 5.341 8 C -0.018 4.018 9 C -0.167 4.167 10 C -0.143 4.143 11 C -0.112 4.112 12 H 0.063 0.937 13 C 0.032 3.968 14 N -0.384 5.384 15 C -0.379 4.379 16 H 0.092 0.908 17 C -0.268 4.268 18 N -0.620 5.620 19 Si 0.804 3.196 20 H -0.192 1.192 21 H -0.221 1.221 22 H -0.215 1.215 23 C 0.007 3.993 24 N -0.346 5.346 25 C -0.025 4.025 26 C -0.152 4.152 27 C -0.195 4.195 28 C 0.290 3.710 29 O -0.448 6.448 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.101 0.899 35 H 0.133 0.867 36 H 0.115 0.885 37 H 0.073 0.927 38 H 0.124 0.876 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.049 0.951 42 H 0.024 0.976 43 H 0.207 0.793 44 H 0.061 0.939 45 H 0.104 0.896 46 H 0.077 0.923 47 H 0.095 0.905 48 H 0.131 0.869 49 H 0.117 0.883 50 H 0.134 0.866 51 H 0.122 0.878 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -26.556 19.776 8.139 34.096 hybrid contribution 1.731 -1.316 -0.120 2.178 sum -24.825 18.460 8.019 31.959 Atomic orbital electron populations 1.21654 0.91665 1.02643 1.03217 1.21810 0.99210 0.93575 1.02525 1.21021 0.89124 0.96651 0.88924 0.82901 1.21738 0.92315 0.75804 0.82510 1.90745 1.65969 1.50062 1.37814 1.48236 1.07009 1.72073 1.06742 1.22169 0.96006 0.99279 0.84344 1.21926 0.95087 0.98031 1.01627 1.21448 0.95567 1.02228 0.95090 1.21551 0.94852 0.97328 0.97506 0.93731 1.20711 0.93333 0.88648 0.94128 1.42527 1.05934 1.20263 1.69723 1.19671 0.86386 1.02091 1.29715 0.90835 1.25595 1.01751 0.97177 1.02269 1.69824 1.32898 1.11323 1.47934 0.85039 0.79675 0.77565 0.77273 1.19170 1.22120 1.21499 1.21417 0.80729 0.97393 0.99761 1.48228 1.51918 1.29996 1.04411 1.22515 0.94660 0.85664 0.99681 1.22652 0.97486 1.02872 0.92180 1.22379 1.00571 0.99094 0.97423 1.21669 0.78842 0.84549 0.85915 1.90714 1.38534 1.31022 1.84481 0.92598 0.89400 0.92345 0.94307 0.89945 0.86694 0.88541 0.92699 0.87644 0.93547 0.90788 0.95071 0.97566 0.79298 0.93906 0.89580 0.92322 0.90516 0.86927 0.88311 0.86633 0.87839 0.87981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 9.80 71.98 0.71 -0.89 16 2 C -0.13 -2.62 5.16 30.59 0.16 -2.47 16 3 C 0.15 2.80 1.82 44.24 0.08 2.88 16 4 H 0.15 1.37 6.32 -2.39 -0.02 1.35 16 5 C 0.49 14.12 6.85 87.66 0.60 14.72 16 6 O -0.57 -22.98 13.45 17.88 0.24 -22.74 16 7 N -0.61 -15.26 2.97 -818.05 -2.43 -17.68 16 8 C 0.10 1.58 6.06 86.36 0.52 2.10 16 9 C -0.13 -2.55 6.08 30.67 0.19 -2.37 16 10 C -0.11 -3.09 5.05 30.62 0.15 -2.93 16 11 C -0.09 -3.25 2.39 -10.57 -0.03 -3.27 16 12 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 13 C 0.16 6.86 5.65 86.38 0.49 7.35 16 14 N -0.74 -39.76 5.32 -343.45 -1.83 -41.59 16 15 C -0.25 -14.43 9.99 84.04 0.84 -13.59 16 16 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 17 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 18 N -0.97 -60.88 13.06 21.65 0.28 -60.60 16 19 Si 0.98 47.60 29.55 68.60 2.03 49.63 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 22 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 23 C 0.13 4.02 5.73 86.51 0.50 4.52 16 24 N -0.61 -11.21 2.22 -797.85 -1.77 -12.98 16 25 C 0.10 0.68 7.31 86.89 0.64 1.32 16 26 C -0.11 -0.58 7.19 31.71 0.23 -0.35 16 27 C -0.15 -2.28 6.86 30.59 0.21 -2.07 16 28 C 0.50 13.08 6.77 87.90 0.60 13.68 16 29 O -0.57 -22.28 14.60 17.85 0.26 -22.02 16 30 H 0.05 0.67 7.75 -2.39 -0.02 0.65 16 31 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 33 H 0.04 1.16 6.65 -2.39 -0.02 1.14 16 34 H 0.08 1.56 7.71 -2.38 -0.02 1.54 16 35 H 0.12 0.96 5.17 -2.39 -0.01 0.95 16 36 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.05 1.67 7.15 -2.39 -0.02 1.66 16 40 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.37 21.18 6.85 -92.71 -0.63 20.54 16 44 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 45 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 46 H 0.06 2.19 7.04 -2.38 -0.02 2.17 16 47 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 49 H 0.10 0.23 8.14 -2.38 -0.02 0.21 16 50 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 51 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 52 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -90.34 401.74 3.40 -86.95 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 0.27 Total: 26.43 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 6.34 Total: 14.60 kcal Atomic # 7 Polarization: -127.11 SS G_CDS: -5.74 Total: -132.85 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: 0.50 Total: -44.75 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -90.34 3.40 -86.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265634643.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.636 kcal (2) G-P(sol) polarization free energy of solvation -90.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds