Wall clock time and date at job start Tue Mar 31 2020 20:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46783 * 2 1 4 4 H 1.09006 * 109.47473 * 305.37261 * 3 2 1 5 5 C 1.50704 * 109.47253 * 185.37262 * 3 2 1 6 6 O 1.21281 * 119.99935 * 255.61767 * 5 3 2 7 7 N 1.34780 * 119.99706 * 75.61160 * 5 3 2 8 8 C 1.46920 * 120.62927 * 5.12519 * 7 5 3 9 9 C 1.53197 * 108.77643 * 126.36728 * 8 7 5 10 10 C 1.53038 * 109.31287 * 54.63252 * 9 8 7 11 11 C 1.53040 * 109.53732 * 298.63934 * 10 9 8 12 12 H 1.08999 * 109.49782 * 301.37792 * 11 10 9 13 13 C 1.53005 * 109.49925 * 181.31855 * 11 10 9 14 14 N 1.46498 * 109.47226 * 64.99207 * 13 11 10 15 15 C 1.36933 * 120.00034 * 179.97438 * 14 13 11 16 16 H 1.08003 * 119.99846 * 0.02562 * 15 14 13 17 17 C 1.38804 * 120.00292 * 180.02562 * 15 14 13 18 18 N 1.31620 * 120.00593 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 119.99990 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47171 * 89.99811 * 19 17 15 21 21 H 1.48497 * 109.47144 * 209.99969 * 19 17 15 22 22 H 1.48500 * 109.46892 * 330.00157 * 19 17 15 23 23 C 1.46927 * 120.62870 * 184.84358 * 7 5 3 24 24 N 1.46504 * 109.47386 * 65.37528 * 3 2 1 25 25 C 1.46769 * 124.34841 * 240.00121 * 24 3 2 26 26 C 1.54477 * 105.47171 * 197.01541 * 25 24 3 27 27 C 1.54628 * 101.76538 * 334.58243 * 26 25 24 28 28 C 1.34412 * 124.35172 * 59.69696 * 24 3 2 29 29 O 1.21288 * 124.93827 * 359.57637 * 28 24 3 30 30 H 1.08991 * 109.47306 * 59.99957 * 1 2 3 31 31 H 1.09004 * 109.46894 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46847 * 299.99606 * 1 2 3 33 33 H 1.08992 * 109.47169 * 240.00157 * 2 1 3 34 34 H 1.09003 * 109.47122 * 119.99351 * 2 1 3 35 35 H 1.09006 * 109.59033 * 246.15213 * 8 7 5 36 36 H 1.09000 * 109.59307 * 6.58032 * 8 7 5 37 37 H 1.08996 * 109.49829 * 174.58122 * 9 8 7 38 38 H 1.09002 * 109.49507 * 294.64934 * 9 8 7 39 39 H 1.09004 * 109.45789 * 58.65433 * 10 9 8 40 40 H 1.08999 * 109.46218 * 178.62576 * 10 9 8 41 41 H 1.08994 * 109.47374 * 185.00155 * 13 11 10 42 42 H 1.09007 * 109.46607 * 304.99745 * 13 11 10 43 43 H 0.97004 * 119.99802 * 0.02562 * 14 13 11 44 44 H 0.96993 * 120.00623 * 180.02562 * 18 17 15 45 45 H 1.09001 * 109.58604 * 353.41671 * 23 7 5 46 46 H 1.08998 * 109.58544 * 113.85052 * 23 7 5 47 47 H 1.09003 * 110.24619 * 316.01374 * 25 24 3 48 48 H 1.08994 * 110.24454 * 78.01398 * 25 24 3 49 49 H 1.08996 * 110.96986 * 92.70141 * 26 25 24 50 50 H 1.09002 * 110.96816 * 216.42601 * 26 25 24 51 51 H 1.08998 * 110.48777 * 143.47864 * 27 26 25 52 52 H 1.09005 * 110.48876 * 266.12184 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6002 1.9834 -0.8380 5 6 3.5411 1.4447 -0.1330 6 8 4.2353 1.6746 0.8345 7 7 4.1121 1.1911 -1.3273 8 6 3.2866 1.0215 -2.5307 9 6 3.7896 1.9820 -3.6130 10 6 5.2855 1.7512 -3.8392 11 6 6.0493 2.0393 -2.5447 12 1 5.8636 3.0674 -2.2339 13 6 7.5478 1.8401 -2.7807 14 7 8.0271 2.8352 -3.7431 15 6 9.3460 2.8520 -4.1110 16 1 10.0327 2.1314 -3.6921 17 6 9.8004 3.7952 -5.0224 18 7 11.0679 3.8111 -5.3765 19 14 8.6127 5.0422 -5.7465 20 1 8.5808 6.2526 -4.8867 21 1 9.0600 5.4167 -7.1121 22 1 7.2534 4.4485 -5.8162 23 6 5.5723 1.0850 -1.4514 24 7 1.6601 2.0948 1.2556 25 6 0.8157 3.2920 1.3445 26 6 1.0459 3.8542 2.7648 27 6 1.4749 2.5868 3.5398 28 6 2.0354 1.6705 2.4745 29 8 2.7252 0.6962 2.6889 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 3.3672 -0.0054 -2.8875 36 1 2.2467 1.2483 -2.2956 37 1 3.2488 1.7992 -4.5416 38 1 3.6241 3.0105 -3.2921 39 1 5.4522 0.7158 -4.1364 40 1 5.6407 2.4165 -4.6261 41 1 8.0829 1.9584 -1.8386 42 1 7.7235 0.8392 -3.1752 43 1 7.4104 3.4827 -4.1190 44 1 11.3855 4.4704 -6.0131 45 1 6.0400 1.3537 -0.5042 46 1 5.8431 0.0635 -1.7183 47 1 1.1186 4.0237 0.5955 48 1 -0.2324 3.0250 1.2098 49 1 1.8413 4.5994 2.7651 50 1 0.1249 4.2694 3.1740 51 1 2.2392 2.8311 4.2775 52 1 0.6132 2.1239 4.0209 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265634644.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:57 Heat of formation + Delta-G solvation = -55.487015 kcal Electronic energy + Delta-G solvation = -30916.027551 eV Core-core repulsion = 26915.689336 eV Total energy + Delta-G solvation = -4000.338216 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.19673 -39.81001 -37.67076 -36.52005 -35.42509 -34.92990 -32.74918 -31.81605 -31.33995 -30.48046 -27.95344 -27.72120 -25.82430 -25.09563 -22.68118 -22.60582 -22.22122 -21.86332 -20.55770 -19.68430 -18.65202 -17.69503 -17.46432 -17.11540 -16.70547 -15.78050 -15.38008 -15.02566 -14.82554 -14.59729 -14.50673 -14.27285 -13.97595 -13.93110 -13.89868 -13.57485 -13.29499 -13.18271 -13.06829 -12.86051 -12.72628 -12.71558 -12.26416 -12.17528 -12.01706 -11.91389 -11.57445 -11.44897 -11.29684 -11.19631 -11.12688 -10.89914 -10.69879 -10.47993 -10.29602 -10.10881 -9.95118 -9.70085 -9.57559 -8.89264 -8.87218 -8.64198 -7.21674 -5.75694 -3.10983 2.32314 2.56173 2.66948 3.03430 3.35365 3.38868 3.44160 4.01702 4.12347 4.25172 4.42118 4.45967 4.53127 4.59151 4.63923 4.75217 4.83966 4.86879 4.89186 5.01539 5.04457 5.07124 5.14611 5.22989 5.30783 5.33634 5.35117 5.48481 5.50873 5.53281 5.54687 5.61653 5.67967 5.70367 5.74267 5.84591 5.86718 5.89615 5.98621 6.05938 6.21391 6.33300 6.44511 6.49366 6.70463 6.78835 6.92460 7.32005 8.00900 8.04189 8.18833 8.43436 9.22372 9.94604 10.14795 11.42923 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017910 B = 0.002625 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.013561 B =10664.180881 C =10972.509530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.146 3.854 4 H 0.108 0.892 5 C 0.501 3.499 6 O -0.512 6.512 7 N -0.609 5.609 8 C 0.106 3.894 9 C -0.136 4.136 10 C -0.113 4.113 11 C -0.110 4.110 12 H 0.072 0.928 13 C 0.164 3.836 14 N -0.754 5.754 15 C -0.242 4.242 16 H 0.090 0.910 17 C 0.003 3.997 18 N -0.935 5.935 19 Si 0.885 3.115 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.278 1.278 23 C 0.121 3.879 24 N -0.611 5.611 25 C 0.104 3.896 26 C -0.131 4.131 27 C -0.154 4.154 28 C 0.525 3.475 29 O -0.508 6.508 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.029 0.971 42 H 0.029 0.971 43 H 0.360 0.640 44 H 0.259 0.741 45 H 0.093 0.907 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.083 0.917 50 H 0.090 0.910 51 H 0.101 0.899 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.638 -3.848 11.735 33.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C 0.039 3.961 4 H 0.126 0.874 5 C 0.286 3.714 6 O -0.386 6.386 7 N -0.344 5.344 8 C -0.017 4.017 9 C -0.174 4.174 10 C -0.151 4.151 11 C -0.130 4.130 12 H 0.090 0.910 13 C 0.037 3.963 14 N -0.400 5.400 15 C -0.372 4.372 16 H 0.108 0.892 17 C -0.193 4.193 18 N -0.583 5.583 19 Si 0.715 3.285 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.001 4.001 24 N -0.347 5.347 25 C -0.019 4.019 26 C -0.169 4.169 27 C -0.195 4.195 28 C 0.312 3.688 29 O -0.381 6.381 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.193 0.807 44 H 0.069 0.931 45 H 0.111 0.889 46 H 0.087 0.913 47 H 0.095 0.905 48 H 0.090 0.910 49 H 0.101 0.899 50 H 0.108 0.892 51 H 0.120 0.880 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -29.617 -4.353 12.333 32.376 hybrid contribution -0.692 1.125 -0.884 1.589 sum -30.308 -3.228 11.450 32.559 Atomic orbital electron populations 1.21707 0.94542 1.02120 1.01809 1.21880 0.96945 0.94082 1.04568 1.20881 0.92330 0.95847 0.87074 0.87394 1.20798 0.90488 0.77173 0.82898 1.90752 1.63866 1.46822 1.37179 1.48077 1.07624 1.71369 1.07326 1.21839 0.94252 1.00184 0.85471 1.21960 0.97662 0.99584 0.98217 1.21555 0.93080 1.02550 0.97921 1.21639 0.96843 0.99760 0.94737 0.90996 1.20563 0.89590 0.93061 0.93132 1.42688 1.08140 1.37381 1.51770 1.19073 0.84220 1.13710 1.20178 0.89190 1.24669 0.95796 0.99118 0.99671 1.69698 1.13271 1.38063 1.37274 0.86546 0.80815 0.82320 0.78803 1.21138 1.21733 1.20420 1.21514 0.78596 0.99493 1.00507 1.47970 1.51747 1.29668 1.05281 1.22099 0.94569 0.86620 0.98572 1.22576 1.03108 0.97260 0.93933 1.22315 1.03087 0.95965 0.98113 1.20722 0.78997 0.85131 0.83919 1.90724 1.36114 1.27777 1.83487 0.92586 0.92152 0.92625 0.90216 0.89536 0.90976 0.90294 0.90678 0.91673 0.91557 0.90859 0.95283 0.95294 0.80688 0.93078 0.88899 0.91254 0.90506 0.90959 0.89859 0.89172 0.88045 0.88114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.80 37.16 0.36 -0.52 16 2 C -0.14 -1.19 5.12 -26.73 -0.14 -1.32 16 3 C 0.15 1.41 1.82 -69.08 -0.13 1.28 16 4 H 0.11 0.74 6.50 -51.93 -0.34 0.41 16 5 C 0.50 6.88 6.83 -10.98 -0.08 6.81 16 6 O -0.51 -9.42 13.68 -14.87 -0.20 -9.62 16 7 N -0.61 -7.48 2.98 -173.03 -0.52 -8.00 16 8 C 0.11 0.92 5.40 -3.71 -0.02 0.90 16 9 C -0.14 -1.35 6.08 -26.61 -0.16 -1.51 16 10 C -0.11 -1.54 5.06 -26.69 -0.13 -1.67 16 11 C -0.11 -1.71 2.36 -90.72 -0.21 -1.93 16 12 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 13 C 0.16 3.22 5.66 -4.04 -0.02 3.20 16 14 N -0.75 -18.11 5.12 -59.91 -0.31 -18.41 16 15 C -0.24 -6.96 10.47 -15.06 -0.16 -7.12 16 16 H 0.09 2.78 8.06 -52.48 -0.42 2.35 16 17 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 18 N -0.93 -29.75 13.97 55.49 0.78 -28.98 16 19 Si 0.88 22.24 27.74 -169.99 -4.71 17.52 16 20 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 23 C 0.12 1.73 5.70 -3.93 -0.02 1.71 16 24 N -0.61 -5.93 2.20 -166.15 -0.37 -6.30 16 25 C 0.10 0.60 7.30 -3.12 -0.02 0.58 16 26 C -0.13 -0.68 7.18 -25.10 -0.18 -0.86 16 27 C -0.15 -1.18 6.86 -26.74 -0.18 -1.36 16 28 C 0.52 6.41 6.70 -10.86 -0.07 6.34 16 29 O -0.51 -8.58 14.85 -14.88 -0.22 -8.80 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.36 7.76 -51.92 -0.40 -0.04 16 33 H 0.08 0.61 7.07 -51.93 -0.37 0.24 16 34 H 0.09 1.04 6.59 -51.93 -0.34 0.70 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.49 5.31 -51.93 -0.28 0.21 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.07 1.16 7.15 -51.93 -0.37 0.79 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.36 8.39 4.71 -40.82 -0.19 8.20 16 44 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 45 H 0.09 1.53 7.00 -51.93 -0.36 1.16 16 46 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 49 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 51 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 52 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 397.82 15.07 6.00 6.00 Total: -1.00 -37.95 397.82 -9.83 -47.78 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -9.01 Total: 4.31 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -1.26 Total: 4.51 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: -0.41 Total: -61.69 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.42 Total: -18.43 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.52 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.95 -9.83 -47.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265634644.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.707 kcal (2) G-P(sol) polarization free energy of solvation -37.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds