Wall clock time and date at job start Tue Mar 31 2020 20:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46783 * 2 1 4 4 H 1.09006 * 109.47473 * 305.37261 * 3 2 1 5 5 C 1.50704 * 109.47253 * 185.37262 * 3 2 1 6 6 O 1.21281 * 119.99935 * 255.61767 * 5 3 2 7 7 N 1.34780 * 119.99706 * 75.61160 * 5 3 2 8 8 C 1.46920 * 120.62927 * 5.12519 * 7 5 3 9 9 C 1.53197 * 108.77643 * 126.36728 * 8 7 5 10 10 C 1.53038 * 109.31287 * 54.63252 * 9 8 7 11 11 C 1.53040 * 109.53732 * 298.63934 * 10 9 8 12 12 H 1.08999 * 109.49782 * 301.37792 * 11 10 9 13 13 C 1.53005 * 109.49925 * 181.31855 * 11 10 9 14 14 N 1.46498 * 109.47226 * 64.99207 * 13 11 10 15 15 C 1.36933 * 120.00034 * 179.97438 * 14 13 11 16 16 H 1.08003 * 119.99846 * 0.02562 * 15 14 13 17 17 C 1.38804 * 120.00292 * 180.02562 * 15 14 13 18 18 N 1.31620 * 120.00593 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 119.99990 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47171 * 89.99811 * 19 17 15 21 21 H 1.48497 * 109.47144 * 209.99969 * 19 17 15 22 22 H 1.48500 * 109.46892 * 330.00157 * 19 17 15 23 23 C 1.46927 * 120.62870 * 184.84358 * 7 5 3 24 24 N 1.46504 * 109.47386 * 65.37528 * 3 2 1 25 25 C 1.46769 * 124.34841 * 240.00121 * 24 3 2 26 26 C 1.54477 * 105.47171 * 197.01541 * 25 24 3 27 27 C 1.54628 * 101.76538 * 334.58243 * 26 25 24 28 28 C 1.34412 * 124.35172 * 59.69696 * 24 3 2 29 29 O 1.21288 * 124.93827 * 359.57637 * 28 24 3 30 30 H 1.08991 * 109.47306 * 59.99957 * 1 2 3 31 31 H 1.09004 * 109.46894 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46847 * 299.99606 * 1 2 3 33 33 H 1.08992 * 109.47169 * 240.00157 * 2 1 3 34 34 H 1.09003 * 109.47122 * 119.99351 * 2 1 3 35 35 H 1.09006 * 109.59033 * 246.15213 * 8 7 5 36 36 H 1.09000 * 109.59307 * 6.58032 * 8 7 5 37 37 H 1.08996 * 109.49829 * 174.58122 * 9 8 7 38 38 H 1.09002 * 109.49507 * 294.64934 * 9 8 7 39 39 H 1.09004 * 109.45789 * 58.65433 * 10 9 8 40 40 H 1.08999 * 109.46218 * 178.62576 * 10 9 8 41 41 H 1.08994 * 109.47374 * 185.00155 * 13 11 10 42 42 H 1.09007 * 109.46607 * 304.99745 * 13 11 10 43 43 H 0.97004 * 119.99802 * 0.02562 * 14 13 11 44 44 H 0.96993 * 120.00623 * 180.02562 * 18 17 15 45 45 H 1.09001 * 109.58604 * 353.41671 * 23 7 5 46 46 H 1.08998 * 109.58544 * 113.85052 * 23 7 5 47 47 H 1.09003 * 110.24619 * 316.01374 * 25 24 3 48 48 H 1.08994 * 110.24454 * 78.01398 * 25 24 3 49 49 H 1.08996 * 110.96986 * 92.70141 * 26 25 24 50 50 H 1.09002 * 110.96816 * 216.42601 * 26 25 24 51 51 H 1.08998 * 110.48777 * 143.47864 * 27 26 25 52 52 H 1.09005 * 110.48876 * 266.12184 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6002 1.9834 -0.8380 5 6 3.5411 1.4447 -0.1330 6 8 4.2353 1.6746 0.8345 7 7 4.1121 1.1911 -1.3273 8 6 3.2866 1.0215 -2.5307 9 6 3.7896 1.9820 -3.6130 10 6 5.2855 1.7512 -3.8392 11 6 6.0493 2.0393 -2.5447 12 1 5.8636 3.0674 -2.2339 13 6 7.5478 1.8401 -2.7807 14 7 8.0271 2.8352 -3.7431 15 6 9.3460 2.8520 -4.1110 16 1 10.0327 2.1314 -3.6921 17 6 9.8004 3.7952 -5.0224 18 7 11.0679 3.8111 -5.3765 19 14 8.6127 5.0422 -5.7465 20 1 8.5808 6.2526 -4.8867 21 1 9.0600 5.4167 -7.1121 22 1 7.2534 4.4485 -5.8162 23 6 5.5723 1.0850 -1.4514 24 7 1.6601 2.0948 1.2556 25 6 0.8157 3.2920 1.3445 26 6 1.0459 3.8542 2.7648 27 6 1.4749 2.5868 3.5398 28 6 2.0354 1.6705 2.4745 29 8 2.7252 0.6962 2.6889 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 3.3672 -0.0054 -2.8875 36 1 2.2467 1.2483 -2.2956 37 1 3.2488 1.7992 -4.5416 38 1 3.6241 3.0105 -3.2921 39 1 5.4522 0.7158 -4.1364 40 1 5.6407 2.4165 -4.6261 41 1 8.0829 1.9584 -1.8386 42 1 7.7235 0.8392 -3.1752 43 1 7.4104 3.4827 -4.1190 44 1 11.3855 4.4704 -6.0131 45 1 6.0400 1.3537 -0.5042 46 1 5.8431 0.0635 -1.7183 47 1 1.1186 4.0237 0.5955 48 1 -0.2324 3.0250 1.2098 49 1 1.8413 4.5994 2.7651 50 1 0.1249 4.2694 3.1740 51 1 2.2392 2.8311 4.2775 52 1 0.6132 2.1239 4.0209 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265634644.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:56 Heat of formation + Delta-G solvation = -80.889372 kcal Electronic energy + Delta-G solvation = -30917.129080 eV Core-core repulsion = 26915.689336 eV Total energy + Delta-G solvation = -4001.439744 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.04266 -40.74078 -38.86069 -37.39368 -36.80396 -35.92333 -34.35324 -33.09061 -32.16032 -31.92365 -28.75748 -28.39966 -27.26821 -26.16815 -24.25869 -23.36000 -23.06918 -22.71800 -21.78782 -20.73467 -19.73759 -19.48619 -18.39555 -17.88767 -17.43205 -16.88658 -16.61704 -16.21242 -16.03712 -15.67416 -15.57441 -15.44922 -15.24675 -15.03624 -14.71743 -14.57268 -14.35538 -14.14824 -13.99388 -13.83868 -13.78435 -13.71757 -13.44373 -13.30369 -12.91326 -12.87000 -12.77366 -12.42145 -12.25541 -12.17253 -12.08986 -11.97556 -11.90141 -11.83431 -11.77981 -11.58535 -11.43683 -11.00688 -10.93150 -10.58384 -9.69163 -9.64717 -9.34224 -8.05966 -5.40581 1.33556 1.39224 1.45482 1.46717 1.58745 1.90798 2.18574 2.45592 3.24730 3.31511 3.49915 3.53726 3.64038 3.72639 3.80707 3.85947 3.90146 4.00126 4.07782 4.16866 4.19528 4.27013 4.34668 4.38242 4.46072 4.54312 4.61976 4.66857 4.69137 4.74418 4.78570 4.81488 4.85309 4.88437 4.92943 5.04559 5.08265 5.13668 5.15672 5.17122 5.23185 5.30168 5.36495 5.43708 5.46672 5.60002 5.71070 6.17603 6.19735 6.36991 7.03503 7.09426 7.31489 7.78152 7.99654 9.15747 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017910 B = 0.002625 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.013561 B =10664.180881 C =10972.509530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.147 3.853 4 H 0.149 0.851 5 C 0.491 3.509 6 O -0.571 6.571 7 N -0.606 5.606 8 C 0.101 3.899 9 C -0.128 4.128 10 C -0.113 4.113 11 C -0.094 4.094 12 H 0.059 0.941 13 C 0.161 3.839 14 N -0.753 5.753 15 C -0.239 4.239 16 H 0.052 0.948 17 C -0.065 4.065 18 N -0.984 5.984 19 Si 0.959 3.041 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.245 1.245 23 C 0.128 3.872 24 N -0.611 5.611 25 C 0.098 3.902 26 C -0.122 4.122 27 C -0.153 4.153 28 C 0.506 3.494 29 O -0.571 6.571 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.044 0.956 35 H 0.090 0.910 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.053 0.947 41 H 0.012 0.988 42 H 0.031 0.969 43 H 0.367 0.633 44 H 0.259 0.741 45 H 0.061 0.939 46 H 0.079 0.921 47 H 0.088 0.912 48 H 0.106 0.894 49 H 0.072 0.928 50 H 0.125 0.875 51 H 0.090 0.910 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.115 -2.680 10.160 37.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.169 4.169 3 C 0.041 3.959 4 H 0.166 0.834 5 C 0.278 3.722 6 O -0.449 6.449 7 N -0.339 5.339 8 C -0.020 4.020 9 C -0.165 4.165 10 C -0.151 4.151 11 C -0.114 4.114 12 H 0.078 0.922 13 C 0.034 3.966 14 N -0.399 5.399 15 C -0.370 4.370 16 H 0.070 0.930 17 C -0.256 4.256 18 N -0.635 5.635 19 Si 0.785 3.215 20 H -0.207 1.207 21 H -0.218 1.218 22 H -0.170 1.170 23 C 0.004 3.996 24 N -0.345 5.345 25 C -0.023 4.023 26 C -0.160 4.160 27 C -0.193 4.193 28 C 0.295 3.705 29 O -0.449 6.449 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.062 0.938 35 H 0.108 0.892 36 H 0.134 0.866 37 H 0.125 0.875 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.030 0.970 42 H 0.049 0.951 43 H 0.201 0.799 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.097 0.903 47 H 0.106 0.894 48 H 0.124 0.876 49 H 0.091 0.909 50 H 0.143 0.857 51 H 0.109 0.891 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -35.184 -3.180 10.735 36.923 hybrid contribution 1.125 0.677 -0.333 1.355 sum -34.059 -2.503 10.402 35.700 Atomic orbital electron populations 1.21673 0.92021 1.02756 1.02964 1.21840 0.98939 0.93012 1.03154 1.21062 0.89194 0.97188 0.88503 0.83353 1.21714 0.92321 0.75852 0.82282 1.90733 1.65500 1.49481 1.39183 1.48182 1.06762 1.70501 1.08503 1.22190 0.95334 1.01074 0.83434 1.21932 0.94772 0.99822 1.00019 1.21546 0.95651 1.02398 0.95465 1.21429 0.93977 0.99336 0.96641 0.92240 1.20685 0.92589 0.92042 0.91245 1.42621 1.06466 1.38429 1.52381 1.19030 0.85787 1.12611 1.19609 0.92974 1.25573 0.97829 1.01736 1.00507 1.69893 1.15814 1.39381 1.38392 0.85359 0.79660 0.79074 0.77397 1.20703 1.21796 1.16971 1.21231 0.80532 0.99463 0.98377 1.48193 1.51301 1.30408 1.04591 1.22464 0.95562 0.85287 0.99035 1.22628 1.04323 0.95611 0.93400 1.22365 1.03360 0.96492 0.97043 1.21578 0.78275 0.84833 0.85806 1.90679 1.38992 1.30587 1.84670 0.89724 0.91897 0.93029 0.88937 0.93761 0.89219 0.86626 0.87537 0.91795 0.90945 0.92813 0.96991 0.95071 0.79895 0.93204 0.92077 0.90322 0.89401 0.87625 0.90886 0.85652 0.89136 0.85886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.80 71.98 0.71 -0.47 16 2 C -0.13 -2.01 5.12 30.60 0.16 -1.86 16 3 C 0.15 2.49 1.82 44.25 0.08 2.57 16 4 H 0.15 1.25 6.50 -2.38 -0.02 1.23 16 5 C 0.49 13.25 6.83 87.66 0.60 13.84 16 6 O -0.57 -22.10 13.68 16.50 0.23 -21.87 16 7 N -0.61 -13.97 2.98 -819.72 -2.44 -16.41 16 8 C 0.10 1.32 5.40 86.37 0.47 1.79 16 9 C -0.13 -1.96 6.08 30.67 0.19 -1.78 16 10 C -0.11 -2.78 5.06 30.62 0.15 -2.63 16 11 C -0.09 -2.89 2.36 -10.86 -0.03 -2.91 16 12 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 13 C 0.16 6.49 5.66 86.38 0.49 6.97 16 14 N -0.75 -36.39 5.12 -343.45 -1.76 -38.15 16 15 C -0.24 -14.19 10.47 84.03 0.88 -13.31 16 16 H 0.05 3.41 8.06 -2.91 -0.02 3.38 16 17 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 18 N -0.98 -64.45 13.97 21.65 0.30 -64.15 16 19 Si 0.96 45.73 27.74 68.60 1.90 47.63 16 20 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 21 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 22 H -0.25 -10.29 6.52 99.48 0.65 -9.64 16 23 C 0.13 3.68 5.70 86.22 0.49 4.17 16 24 N -0.61 -10.79 2.20 -798.17 -1.75 -12.54 16 25 C 0.10 0.76 7.30 86.83 0.63 1.39 16 26 C -0.12 -0.92 7.18 31.65 0.23 -0.69 16 27 C -0.15 -2.20 6.86 30.59 0.21 -1.99 16 28 C 0.51 12.54 6.70 87.90 0.59 13.13 16 29 O -0.57 -20.74 14.85 16.48 0.24 -20.49 16 30 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.05 0.50 7.76 -2.38 -0.02 0.48 16 33 H 0.09 1.13 7.07 -2.39 -0.02 1.12 16 34 H 0.04 1.09 6.59 -2.39 -0.02 1.07 16 35 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.12 0.72 5.31 -2.39 -0.01 0.70 16 37 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 39 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.05 1.55 7.15 -2.39 -0.02 1.54 16 41 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 43 H 0.37 16.65 4.71 -92.71 -0.44 16.21 16 44 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 45 H 0.06 2.16 7.00 -2.39 -0.02 2.14 16 46 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 49 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 51 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 52 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -91.48 397.82 3.44 -88.04 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.41 Total: 23.19 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 6.31 Total: 14.77 kcal Atomic # 7 Polarization: -125.61 SS G_CDS: -5.65 Total: -131.26 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: 0.47 Total: -42.37 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.90 Total: 47.63 kcal Total: -91.48 3.44 -88.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265634644.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.151 kcal (2) G-P(sol) polarization free energy of solvation -91.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds