Wall clock time and date at job start Tue Mar 31 2020 20:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.47289 * 55.00475 * 3 2 1 5 5 C 1.53006 * 109.47127 * 295.00521 * 3 2 1 6 6 C 1.52997 * 109.47232 * 175.00399 * 3 2 1 7 7 H 1.09001 * 109.47375 * 60.00133 * 6 3 2 8 8 C 1.53002 * 109.46978 * 180.02562 * 6 3 2 9 9 C 1.50696 * 109.47238 * 299.99651 * 6 3 2 10 10 O 1.21285 * 119.99654 * 0.02562 * 9 6 3 11 11 N 1.34774 * 120.00299 * 179.97438 * 9 6 3 12 12 C 1.46506 * 120.00001 * 180.02562 * 11 9 6 13 13 H 1.08997 * 115.51471 * 350.41356 * 12 11 9 14 14 C 1.53001 * 117.44105 * 205.00016 * 12 11 9 15 15 H 1.08998 * 119.52515 * 4.09214 * 14 12 11 16 16 C 1.54379 * 118.12620 * 159.12814 * 14 12 11 17 17 N 1.48564 * 104.59301 * 87.23022 * 16 14 12 18 18 C 1.46897 * 111.00052 * 200.95787 * 17 16 14 19 19 C 1.50695 * 109.47318 * 190.00020 * 18 17 16 20 20 O 1.21289 * 120.00230 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00320 * 180.02562 * 19 18 17 22 22 C 1.37098 * 120.00369 * 179.97438 * 21 19 18 23 23 H 1.08002 * 119.99954 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99905 * 180.02562 * 22 21 19 25 25 N 1.31404 * 120.00230 * 0.02562 * 24 22 21 26 26 Si 1.86809 * 119.99705 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47066 * 0.02562 * 26 24 22 28 28 H 1.48495 * 109.47015 * 119.99918 * 26 24 22 29 29 H 1.48502 * 109.46814 * 239.99788 * 26 24 22 30 30 C 1.48555 * 104.22142 * 320.51593 * 17 16 14 31 31 C 1.52997 * 117.44251 * 135.77269 * 12 11 9 32 32 H 1.08993 * 119.52891 * 355.90551 * 31 12 11 33 33 H 1.09004 * 109.47031 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46818 * 300.00038 * 1 2 3 35 35 H 1.08994 * 109.47281 * 59.99487 * 1 2 3 36 36 H 1.09002 * 109.46818 * 239.99962 * 2 1 3 37 37 H 1.09004 * 109.47686 * 120.00185 * 2 1 3 38 38 H 1.09001 * 109.47002 * 299.99574 * 5 3 2 39 39 H 1.08993 * 109.46955 * 60.00011 * 5 3 2 40 40 H 1.09000 * 109.47050 * 179.97438 * 5 3 2 41 41 H 1.09004 * 109.47006 * 179.97438 * 8 6 3 42 42 H 1.09002 * 109.47097 * 299.99801 * 8 6 3 43 43 H 1.09001 * 109.47600 * 60.00041 * 8 6 3 44 44 H 0.96992 * 120.00055 * 0.02562 * 11 9 6 45 45 H 1.08999 * 110.41056 * 206.00726 * 16 14 12 46 46 H 1.08996 * 110.41324 * 328.45305 * 16 14 12 47 47 H 1.09002 * 109.47040 * 310.00383 * 18 17 16 48 48 H 1.09003 * 109.47237 * 69.99948 * 18 17 16 49 49 H 0.97004 * 119.99558 * 0.02562 * 21 19 18 50 50 H 0.97002 * 120.00280 * 180.02562 * 25 24 22 51 51 H 1.09004 * 110.41151 * 158.26306 * 30 17 16 52 52 H 1.08999 * 110.41009 * 280.58447 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4443 0.1256 7 1 3.9995 0.9052 -0.7162 8 6 4.0748 2.8868 0.1263 9 6 3.9636 0.7706 1.4133 10 8 3.1120 0.3317 2.1570 11 7 5.2665 0.6548 1.7379 12 6 5.6542 -0.0007 2.9895 13 1 4.8373 -0.2209 3.6767 14 6 7.0037 0.3846 3.5987 15 1 7.5988 1.1700 3.1327 16 6 7.2273 0.1145 5.1021 17 7 7.7302 -1.2822 5.1608 18 6 7.5266 -1.8594 6.4962 19 6 8.2606 -3.1719 6.5933 20 8 8.8909 -3.5861 5.6434 21 7 8.2158 -3.8862 7.7354 22 6 8.8831 -5.0806 7.8236 23 1 9.4450 -5.4489 6.9780 24 6 8.8364 -5.8171 9.0009 25 7 8.1523 -5.3692 10.0295 26 14 9.7462 -7.4442 9.1213 27 1 10.4357 -7.7221 7.8358 28 1 10.7487 -7.3710 10.2144 29 1 8.7779 -8.5326 9.4097 30 6 6.9257 -2.0029 4.1409 31 6 6.8158 -0.9949 2.9344 32 1 7.2710 -1.2365 1.9741 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 -0.3633 0.5139 -0.8899 36 1 1.8933 -0.5139 -0.8900 37 1 1.8934 -0.5139 0.8900 38 1 2.0698 1.5876 -2.1492 39 1 0.5489 2.1253 -1.3968 40 1 1.9982 3.1544 -1.3071 41 1 5.1611 2.8881 0.2162 42 1 3.7864 3.3745 -0.8049 43 1 3.6403 3.4255 0.9683 44 1 5.9476 1.0054 1.1429 45 1 7.9695 0.8031 5.5058 46 1 6.2882 0.2036 5.6482 47 1 7.9091 -1.1724 7.2511 48 1 6.4621 -2.0252 6.6619 49 1 7.7108 -3.5555 8.4947 50 1 8.1201 -5.8832 10.8515 51 1 7.4408 -2.9086 3.8208 52 1 5.9401 -2.2470 4.5373 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265724664.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:31 Heat of formation + Delta-G solvation = -46.924441 kcal Electronic energy + Delta-G solvation = -29016.842883 eV Core-core repulsion = 25016.875969 eV Total energy + Delta-G solvation = -3999.966915 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.70952 -39.64563 -37.96820 -36.85304 -35.16708 -33.88848 -33.25541 -31.95193 -31.16347 -28.97230 -28.20528 -27.52024 -26.24210 -24.73208 -23.53485 -22.19985 -21.06711 -20.86559 -20.28300 -19.87034 -19.09770 -17.83059 -17.49559 -16.99936 -15.92723 -15.50350 -15.46802 -15.26443 -15.00867 -14.66893 -14.49363 -14.04200 -13.80912 -13.74080 -13.54906 -13.40200 -13.10776 -13.01201 -12.86190 -12.53475 -12.42951 -12.14130 -11.99427 -11.98595 -11.91716 -11.77522 -11.46879 -11.37226 -11.31710 -11.08357 -10.90949 -10.87424 -10.74661 -10.73856 -10.32520 -10.20409 -10.09237 -9.74976 -9.48014 -8.92265 -8.49234 -8.00356 -7.92215 -6.38978 -3.79638 2.30608 2.70431 3.18233 3.28526 3.35811 3.59889 3.93114 4.02430 4.18504 4.25347 4.32435 4.43390 4.54197 4.63996 4.76758 4.77868 4.90742 4.96936 4.98829 5.07233 5.14805 5.17119 5.22826 5.26806 5.27962 5.31588 5.38881 5.46434 5.53344 5.56310 5.63749 5.70862 5.71502 5.75196 5.79074 5.83878 5.85045 5.95109 6.01473 6.02107 6.13775 6.24073 6.29750 6.35024 6.38432 7.06063 7.18920 7.20569 7.58005 7.96005 8.09291 8.64980 9.21248 9.57674 10.09718 10.78971 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021315 B = 0.001815 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.329518 B =15419.631893 C =16128.999319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C -0.071 4.071 4 H 0.077 0.923 5 C -0.151 4.151 6 C -0.107 4.107 7 H 0.097 0.903 8 C -0.147 4.147 9 C 0.521 3.479 10 O -0.528 6.528 11 N -0.700 5.700 12 C 0.102 3.898 13 H 0.133 0.867 14 C -0.169 4.169 15 H 0.116 0.884 16 C 0.061 3.939 17 N -0.483 5.483 18 C 0.034 3.966 19 C 0.446 3.554 20 O -0.577 6.577 21 N -0.566 5.566 22 C -0.297 4.297 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 C 0.070 3.930 31 C -0.161 4.161 32 H 0.121 0.879 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.401 0.599 45 H 0.088 0.912 46 H 0.046 0.954 47 H 0.090 0.910 48 H 0.052 0.948 49 H 0.392 0.608 50 H 0.270 0.730 51 H 0.101 0.899 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.557 18.586 -19.860 29.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C -0.090 4.090 4 H 0.095 0.905 5 C -0.208 4.208 6 C -0.128 4.128 7 H 0.115 0.885 8 C -0.204 4.204 9 C 0.308 3.692 10 O -0.404 6.404 11 N -0.349 5.349 12 C -0.005 4.005 13 H 0.151 0.849 14 C -0.189 4.189 15 H 0.134 0.866 16 C -0.067 4.067 17 N -0.207 5.207 18 C -0.098 4.098 19 C 0.231 3.769 20 O -0.460 6.460 21 N -0.203 5.203 22 C -0.427 4.427 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 C -0.058 4.058 31 C -0.182 4.182 32 H 0.139 0.861 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.235 0.765 45 H 0.106 0.894 46 H 0.064 0.936 47 H 0.109 0.891 48 H 0.070 0.930 49 H 0.225 0.775 50 H 0.080 0.920 51 H 0.119 0.881 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.203 17.862 -19.869 28.972 hybrid contribution -0.229 -0.375 0.570 0.720 sum -11.432 17.487 -19.299 28.442 Atomic orbital electron populations 1.21760 0.96058 1.01392 1.01378 1.21843 0.96033 0.96034 1.03225 1.20961 0.91980 0.97472 0.98568 0.90508 1.21964 1.01727 1.00281 0.96841 1.21403 0.98340 0.97480 0.95574 0.88459 1.21852 1.01033 0.94290 1.03251 1.20704 0.81864 0.78757 0.87899 1.90661 1.49532 1.48162 1.52086 1.45369 1.07760 1.59661 1.22131 1.21856 0.92385 0.98168 0.88081 0.84932 1.23791 0.99296 0.99832 0.95958 0.86556 1.22654 0.98989 0.92033 0.93019 1.65255 1.50962 1.00372 1.04092 1.22063 0.99068 0.97206 0.91453 1.19683 0.86308 0.86368 0.84540 1.90510 1.46162 1.71495 1.37839 1.41867 1.45999 1.19795 1.12672 1.19745 1.27086 0.95953 0.99867 0.87877 1.25255 0.97725 0.99952 0.95100 1.69619 1.41502 1.39557 1.03729 0.85807 0.78951 0.81194 0.78435 1.19239 1.20780 1.20804 1.23224 0.95921 0.97042 0.89638 1.24683 1.01954 0.91520 1.00010 0.86071 0.93017 0.92813 0.93066 0.92876 0.89142 0.92686 0.92123 0.92450 0.92191 0.90949 0.91930 0.76456 0.89409 0.93626 0.89136 0.93008 0.77520 0.91969 0.88078 0.93771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.67 37.16 0.36 -0.83 16 2 C -0.13 -1.18 5.14 -26.73 -0.14 -1.32 16 3 C -0.07 -0.53 1.61 -90.62 -0.15 -0.67 16 4 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 5 C -0.15 -0.82 8.60 37.16 0.32 -0.50 16 6 C -0.11 -0.71 2.32 -91.77 -0.21 -0.93 16 7 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 8 C -0.15 -0.72 8.74 37.16 0.32 -0.39 16 9 C 0.52 5.15 6.83 -10.99 -0.08 5.07 16 10 O -0.53 -7.25 13.24 5.55 0.07 -7.17 16 11 N -0.70 -6.09 5.46 -53.81 -0.29 -6.38 16 12 C 0.10 1.12 5.92 -67.93 -0.40 0.72 16 13 H 0.13 1.74 7.40 -51.93 -0.38 1.35 16 14 C -0.17 -1.85 6.97 -89.24 -0.62 -2.47 16 15 H 0.12 1.07 8.14 -51.93 -0.42 0.64 16 16 C 0.06 0.78 6.26 -2.18 -0.01 0.77 16 17 N -0.48 -8.13 4.98 -229.23 -1.14 -9.27 16 18 C 0.03 0.61 5.32 -4.98 -0.03 0.59 16 19 C 0.45 10.67 7.63 -10.99 -0.08 10.59 16 20 O -0.58 -15.76 14.80 5.55 0.08 -15.68 16 21 N -0.57 -14.53 5.29 -10.97 -0.06 -14.59 16 22 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 23 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -24.81 13.05 55.50 0.72 -24.09 16 26 Si 0.93 21.27 29.55 -169.99 -5.02 16.24 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 29 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 30 C 0.07 1.12 5.78 -0.40 0.00 1.12 16 31 C -0.16 -1.99 7.33 -87.45 -0.64 -2.63 16 32 H 0.12 1.37 8.14 -51.93 -0.42 0.94 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.05 0.34 6.56 -51.93 -0.34 0.00 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 1.05 5.41 -51.93 -0.28 0.77 16 38 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.06 0.33 6.56 -51.93 -0.34 -0.01 16 40 H 0.06 0.26 6.43 -51.93 -0.33 -0.07 16 41 H 0.06 0.23 7.56 -51.93 -0.39 -0.16 16 42 H 0.07 0.27 6.43 -51.93 -0.33 -0.06 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.40 2.40 8.24 -40.82 -0.34 2.06 16 45 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.05 0.56 8.00 -51.93 -0.42 0.14 16 47 H 0.09 1.47 8.08 -51.93 -0.42 1.05 16 48 H 0.05 0.86 7.77 -51.93 -0.40 0.46 16 49 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 50 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 51 H 0.10 1.90 7.24 -51.93 -0.38 1.53 16 52 H 0.04 0.70 7.75 -51.93 -0.40 0.30 16 LS Contribution 409.15 15.07 6.17 6.17 Total: -1.00 -33.06 409.15 -9.89 -42.95 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -8.82 Total: 10.74 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -1.60 Total: 1.07 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.77 Total: -54.32 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: 0.16 Total: -22.85 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.06 -9.89 -42.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265724664.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.974 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds