Wall clock time and date at job start Tue Mar 31 2020 20:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47252 * 2 1 4 4 H 1.08994 * 109.47452 * 304.99976 * 3 2 1 5 5 C 1.53006 * 109.47143 * 65.00080 * 3 2 1 6 6 C 1.53005 * 109.47109 * 184.99672 * 3 2 1 7 7 H 1.08994 * 109.47056 * 299.99923 * 6 3 2 8 8 C 1.53005 * 109.46895 * 180.02562 * 6 3 2 9 9 C 1.50695 * 109.46784 * 60.00208 * 6 3 2 10 10 O 1.21286 * 120.00368 * 0.02562 * 9 6 3 11 11 N 1.34774 * 119.99825 * 179.97438 * 9 6 3 12 12 C 1.46503 * 120.00034 * 179.97438 * 11 9 6 13 13 H 1.08998 * 115.49328 * 9.62389 * 12 11 9 14 14 C 1.53005 * 117.44555 * 224.23213 * 12 11 9 15 15 H 1.08997 * 120.23032 * 3.80810 * 14 12 11 16 16 C 1.54375 * 118.12583 * 160.68905 * 14 12 11 17 17 N 1.48558 * 104.59740 * 87.22965 * 16 14 12 18 18 C 1.46896 * 111.00234 * 200.95864 * 17 16 14 19 19 C 1.50700 * 109.46942 * 285.41735 * 18 17 16 20 20 O 1.21293 * 120.00282 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00075 * 179.97438 * 19 18 17 22 22 C 1.37104 * 120.00173 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99666 * 359.97438 * 22 21 19 24 24 C 1.38945 * 120.00001 * 180.27893 * 22 21 19 25 25 N 1.31414 * 119.99893 * 359.72318 * 24 22 21 26 26 Si 1.86801 * 119.99957 * 179.72309 * 24 22 21 27 27 H 1.48496 * 109.47031 * 59.99793 * 26 24 22 28 28 H 1.48504 * 109.46970 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47038 * 299.99770 * 26 24 22 30 30 C 1.48563 * 104.22188 * 320.51595 * 17 16 14 31 31 C 1.53001 * 117.44181 * 155.00556 * 12 11 9 32 32 H 1.09000 * 120.23203 * 356.18654 * 31 12 11 33 33 H 1.09007 * 109.46949 * 59.99551 * 1 2 3 34 34 H 1.08997 * 109.47283 * 179.97438 * 1 2 3 35 35 H 1.09001 * 109.46792 * 300.00341 * 1 2 3 36 36 H 1.08995 * 109.47199 * 240.00230 * 2 1 3 37 37 H 1.08997 * 109.46697 * 119.99974 * 2 1 3 38 38 H 1.09004 * 109.47067 * 59.99744 * 5 3 2 39 39 H 1.08997 * 109.47283 * 179.97438 * 5 3 2 40 40 H 1.09003 * 109.46840 * 300.00154 * 5 3 2 41 41 H 1.08997 * 109.46480 * 180.02562 * 8 6 3 42 42 H 1.08994 * 109.47053 * 299.99737 * 8 6 3 43 43 H 1.08995 * 109.47084 * 60.00674 * 8 6 3 44 44 H 0.97005 * 120.00269 * 0.02562 * 11 9 6 45 45 H 1.09002 * 110.41126 * 328.44886 * 16 14 12 46 46 H 1.09004 * 110.40624 * 206.00610 * 16 14 12 47 47 H 1.08994 * 109.47346 * 165.42040 * 18 17 16 48 48 H 1.08998 * 109.47279 * 45.41712 * 18 17 16 49 49 H 0.97000 * 120.00140 * 0.02562 * 21 19 18 50 50 H 0.97004 * 119.99542 * 180.02562 * 25 24 22 51 51 H 1.09000 * 110.41438 * 158.26118 * 30 17 16 52 52 H 1.09001 * 110.40756 * 280.58639 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5649 1.4443 -0.1256 7 1 3.9994 0.9053 0.7162 8 6 4.0750 2.8868 -0.1250 9 6 3.9635 0.7705 -1.4133 10 8 3.1119 0.3325 -2.1575 11 7 5.2664 0.6556 -1.7384 12 6 5.6540 0.0001 -2.9900 13 1 4.8369 -0.2201 -3.6769 14 6 6.8164 -0.9933 -2.9352 15 1 7.2837 -1.2391 -1.9817 16 6 6.9559 -2.0144 -4.0846 17 7 7.7589 -1.3092 -5.1165 18 6 7.5707 -1.9207 -6.4388 19 6 8.3202 -3.2267 -6.4995 20 8 8.9497 -3.6100 -5.5362 21 7 8.2911 -3.9687 -7.6243 22 6 8.9726 -5.1571 -7.6793 23 1 9.5331 -5.4984 -6.8215 24 6 8.9474 -5.9193 -8.8408 25 7 8.2658 -5.5037 -9.8847 26 14 9.8822 -7.5346 -8.9185 27 1 9.3668 -8.4555 -7.8738 28 1 9.6955 -8.1508 -10.2567 29 1 11.3271 -7.2820 -8.6865 30 6 7.2397 0.0826 -5.0949 31 6 7.0031 0.3863 -3.5998 32 1 7.6093 1.1674 -3.1410 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 -0.3633 0.5139 0.8900 36 1 1.8933 -0.5138 -0.8900 37 1 1.8933 -0.5138 0.8900 38 1 2.0699 1.5874 2.1492 39 1 1.9990 3.1540 1.3076 40 1 0.5490 2.1252 1.3970 41 1 5.1612 2.8880 -0.2150 42 1 3.6405 3.4261 -0.9666 43 1 3.7867 3.3736 0.8066 44 1 5.9476 1.0063 -1.1434 45 1 5.9750 -2.2775 -4.4804 46 1 7.4793 -2.9060 -3.7394 47 1 7.9503 -1.2479 -7.2077 48 1 6.5093 -2.1028 -6.6072 49 1 7.7881 -3.6620 -8.3948 50 1 8.2479 -6.0360 -10.6955 51 1 7.9766 0.7698 -5.5104 52 1 6.3042 0.1480 -5.6506 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265724666.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:33 Heat of formation + Delta-G solvation = -71.296314 kcal Electronic energy + Delta-G solvation = -29024.230952 eV Core-core repulsion = 25023.207194 eV Total energy + Delta-G solvation = -4001.023758 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.63370 -40.77619 -39.73451 -37.57263 -36.33560 -35.79062 -34.16895 -33.27179 -32.69554 -29.58717 -29.44389 -28.94308 -26.83765 -26.49056 -24.46277 -23.25063 -22.05330 -21.62151 -21.32901 -20.91169 -20.52140 -19.86838 -18.28546 -17.93396 -17.62824 -16.65982 -16.51014 -16.30589 -16.05006 -16.03312 -15.85545 -15.45398 -14.99133 -14.84968 -14.60809 -14.40510 -14.12995 -13.88020 -13.64061 -13.54457 -13.48397 -13.39530 -13.13546 -13.01620 -12.92454 -12.57455 -12.51387 -12.45444 -12.43696 -12.42351 -12.34890 -12.12903 -11.93421 -11.54171 -11.48677 -11.45772 -11.29843 -11.08334 -10.52765 -10.33693 -10.01736 -9.79902 -9.39794 -8.46783 -5.95712 1.39190 1.40563 1.51828 1.53458 1.91356 2.04744 2.28115 2.63530 2.81573 3.19577 3.35574 3.54715 3.64514 3.65313 3.77163 3.82061 3.91629 4.07740 4.18182 4.23454 4.27187 4.38617 4.40532 4.43645 4.48543 4.51542 4.57253 4.60421 4.64905 4.74165 4.76393 4.84088 4.89689 4.97596 5.02658 5.09575 5.11099 5.12386 5.15635 5.21713 5.32426 5.36511 5.39940 5.46693 5.55914 5.66166 5.78696 5.84963 6.05834 6.50920 6.60147 7.12320 7.23936 7.55641 8.11700 8.70480 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021367 B = 0.001815 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.090899 B =15423.757480 C =16126.415033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.135 4.135 3 C -0.070 4.070 4 H 0.057 0.943 5 C -0.146 4.146 6 C -0.100 4.100 7 H 0.117 0.883 8 C -0.143 4.143 9 C 0.516 3.484 10 O -0.572 6.572 11 N -0.687 5.687 12 C 0.119 3.881 13 H 0.111 0.889 14 C -0.174 4.174 15 H 0.128 0.872 16 C 0.067 3.933 17 N -0.504 5.504 18 C 0.046 3.954 19 C 0.442 3.558 20 O -0.616 6.616 21 N -0.575 5.575 22 C -0.333 4.333 23 H 0.079 0.921 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.994 3.006 27 H -0.273 1.273 28 H -0.270 1.270 29 H -0.271 1.271 30 C 0.057 3.943 31 C -0.146 4.146 32 H 0.148 0.852 33 H 0.043 0.957 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.051 0.949 43 H 0.090 0.910 44 H 0.418 0.582 45 H 0.035 0.965 46 H 0.064 0.936 47 H 0.114 0.886 48 H 0.067 0.933 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.105 0.895 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.625 20.850 20.817 31.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C -0.089 4.089 4 H 0.076 0.924 5 C -0.203 4.203 6 C -0.121 4.121 7 H 0.135 0.865 8 C -0.201 4.201 9 C 0.304 3.696 10 O -0.451 6.451 11 N -0.337 5.337 12 C 0.011 3.989 13 H 0.129 0.871 14 C -0.194 4.194 15 H 0.146 0.854 16 C -0.061 4.061 17 N -0.228 5.228 18 C -0.086 4.086 19 C 0.229 3.771 20 O -0.501 6.501 21 N -0.213 5.213 22 C -0.463 4.463 23 H 0.097 0.903 24 C -0.214 4.214 25 N -0.562 5.562 26 Si 0.817 3.183 27 H -0.198 1.198 28 H -0.194 1.194 29 H -0.196 1.196 30 C -0.070 4.070 31 C -0.166 4.166 32 H 0.166 0.834 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.070 0.930 43 H 0.108 0.892 44 H 0.256 0.744 45 H 0.054 0.946 46 H 0.083 0.917 47 H 0.132 0.868 48 H 0.085 0.915 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.123 0.877 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.266 20.187 20.842 31.126 hybrid contribution -0.293 -1.065 -0.975 1.473 sum -11.559 19.123 19.867 29.899 Atomic orbital electron populations 1.21753 0.95684 1.01310 1.01717 1.21804 0.96478 0.97002 1.01949 1.20934 0.92524 0.96292 0.99133 0.92423 1.21930 1.01818 1.00901 0.95632 1.21441 0.97859 0.98710 0.94059 0.86504 1.21867 1.01917 0.92540 1.03751 1.21392 0.81557 0.78061 0.88543 1.90661 1.50771 1.50012 1.53663 1.45246 1.08054 1.58924 1.21462 1.21493 0.91462 0.97232 0.88711 0.87083 1.23854 1.04121 0.91514 0.99921 0.85369 1.22507 0.94824 0.96983 0.91763 1.65241 1.51922 1.02247 1.03414 1.21915 0.98918 0.94196 0.93533 1.20721 0.85497 0.87512 0.83353 1.90477 1.48036 1.74007 1.37608 1.41928 1.45966 1.19564 1.13811 1.19625 1.28453 0.98018 1.00204 0.90334 1.26055 0.98205 1.02864 0.94254 1.69674 1.41837 1.40662 1.04016 0.84978 0.78423 0.77138 0.77726 1.19778 1.19427 1.19638 1.22769 0.99689 0.89696 0.94813 1.23911 0.99017 0.99056 0.94628 0.83444 0.93784 0.93349 0.91353 0.92348 0.92077 0.91747 0.91063 0.92191 0.90625 0.93020 0.89162 0.74406 0.94648 0.91718 0.86786 0.91508 0.77064 0.91311 0.87677 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.67 71.98 0.70 -1.65 16 2 C -0.13 -2.37 5.14 30.59 0.16 -2.21 16 3 C -0.07 -0.96 1.62 -10.79 -0.02 -0.97 16 4 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 5 C -0.15 -1.22 8.60 71.98 0.62 -0.60 16 6 C -0.10 -1.13 2.32 -11.54 -0.03 -1.15 16 7 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 8 C -0.14 -0.96 8.74 71.98 0.63 -0.33 16 9 C 0.52 9.71 6.83 87.66 0.60 10.31 16 10 O -0.57 -16.07 13.24 -3.05 -0.04 -16.11 16 11 N -0.69 -10.63 5.46 -442.52 -2.41 -13.05 16 12 C 0.12 2.48 5.98 44.99 0.27 2.75 16 13 H 0.11 2.91 7.40 -2.39 -0.02 2.90 16 14 C -0.17 -4.17 7.05 -9.90 -0.07 -4.24 16 15 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 16 C 0.07 2.23 5.72 86.45 0.49 2.72 16 17 N -0.50 -16.81 4.98 -886.06 -4.41 -21.22 16 18 C 0.05 1.66 5.32 85.56 0.45 2.12 16 19 C 0.44 21.80 7.63 87.66 0.67 22.47 16 20 O -0.62 -35.07 14.80 -3.07 -0.05 -35.11 16 21 N -0.58 -30.39 5.29 -306.98 -1.62 -32.01 16 22 C -0.33 -19.37 9.68 84.04 0.81 -18.55 16 23 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 24 C -0.01 -0.77 5.50 84.92 0.47 -0.31 16 25 N -0.92 -50.63 13.05 21.66 0.28 -50.35 16 26 Si 0.99 43.74 29.55 68.60 2.03 45.76 16 27 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 28 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 29 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 30 C 0.06 1.35 6.26 86.45 0.54 1.90 16 31 C -0.15 -2.84 7.05 -9.90 -0.07 -2.91 16 32 H 0.15 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 0.84 6.56 -2.39 -0.02 0.82 16 36 H 0.06 1.43 5.42 -2.39 -0.01 1.42 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 39 H 0.07 0.42 6.43 -2.39 -0.02 0.40 16 40 H 0.06 0.52 6.56 -2.39 -0.02 0.51 16 41 H 0.07 0.29 7.56 -2.39 -0.02 0.27 16 42 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.09 0.32 6.43 -2.39 -0.02 0.30 16 44 H 0.42 3.66 8.24 -92.70 -0.76 2.90 16 45 H 0.04 1.18 7.75 -2.39 -0.02 1.17 16 46 H 0.06 2.60 7.24 -2.39 -0.02 2.59 16 47 H 0.11 3.57 8.08 -2.39 -0.02 3.55 16 48 H 0.07 2.22 7.77 -2.39 -0.02 2.20 16 49 H 0.40 19.86 7.90 -92.71 -0.73 19.13 16 50 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 51 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 52 H 0.05 1.20 7.99 -2.39 -0.02 1.18 16 Total: -1.00 -75.04 408.95 -0.56 -75.60 By element: Atomic # 1 Polarization: 37.74 SS G_CDS: -0.56 Total: 37.18 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 6.23 Total: 9.32 kcal Atomic # 7 Polarization: -108.46 SS G_CDS: -8.16 Total: -116.63 kcal Atomic # 8 Polarization: -51.14 SS G_CDS: -0.09 Total: -51.23 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -75.04 -0.56 -75.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265724666.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.303 kcal (2) G-P(sol) polarization free energy of solvation -75.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds