Wall clock time and date at job start Tue Mar 31 2020 20:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47166 * 2 1 4 4 H 1.08998 * 109.46505 * 304.99766 * 3 2 1 5 5 C 1.52997 * 109.47127 * 64.99895 * 3 2 1 6 6 C 1.52992 * 109.47223 * 185.00400 * 3 2 1 7 7 H 1.09001 * 109.47066 * 299.99881 * 6 3 2 8 8 C 1.52997 * 109.47482 * 59.99712 * 6 3 2 9 9 C 1.50696 * 109.47490 * 179.97438 * 6 3 2 10 10 O 1.21290 * 119.99335 * 359.97438 * 9 6 3 11 11 N 1.34774 * 120.00492 * 179.97438 * 9 6 3 12 12 C 1.46506 * 120.00001 * 180.02562 * 11 9 6 13 13 H 1.08994 * 115.51598 * 9.41484 * 12 11 9 14 14 C 1.53004 * 117.44037 * 223.99908 * 12 11 9 15 15 H 1.09004 * 119.52671 * 4.08695 * 14 12 11 16 16 C 1.57644 * 116.13944 * 161.44003 * 14 12 11 17 17 N 1.48559 * 104.59542 * 87.42959 * 16 14 12 18 18 C 1.46908 * 110.99426 * 200.32085 * 17 16 14 19 19 C 1.50697 * 109.47167 * 285.41720 * 18 17 16 20 20 O 1.21292 * 120.00416 * 0.02562 * 19 18 17 21 21 N 1.34778 * 119.99771 * 179.97438 * 19 18 17 22 22 C 1.37098 * 119.99775 * 180.02562 * 21 19 18 23 23 H 1.07999 * 120.00403 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99610 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00077 * 179.97438 * 24 22 21 26 26 Si 1.86793 * 120.00188 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.47166 * 89.99730 * 26 24 22 28 28 H 1.48500 * 109.47213 * 209.99533 * 26 24 22 29 29 H 1.48499 * 109.47385 * 329.99827 * 26 24 22 30 30 C 1.48548 * 104.22317 * 319.88078 * 17 16 14 31 31 C 1.52993 * 117.44262 * 154.84061 * 12 11 9 32 32 H 1.08996 * 119.52887 * 355.90273 * 31 12 11 33 33 H 1.09002 * 109.46738 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.46865 * 300.00077 * 1 2 3 35 35 H 1.08997 * 109.47108 * 60.00222 * 1 2 3 36 36 H 1.09007 * 109.47132 * 239.99951 * 2 1 3 37 37 H 1.08996 * 109.47552 * 120.00073 * 2 1 3 38 38 H 1.09002 * 109.47153 * 180.02562 * 5 3 2 39 39 H 1.09001 * 109.46832 * 60.00321 * 5 3 2 40 40 H 1.09004 * 109.47261 * 300.00303 * 5 3 2 41 41 H 1.09001 * 109.47289 * 60.00300 * 8 6 3 42 42 H 1.09004 * 109.47261 * 180.02562 * 8 6 3 43 43 H 1.09002 * 109.47153 * 300.00216 * 8 6 3 44 44 H 0.96992 * 120.00055 * 0.02562 * 11 9 6 45 45 H 1.08996 * 110.94879 * 328.37423 * 16 14 12 46 46 H 1.09003 * 109.96576 * 205.99028 * 16 14 12 47 47 H 1.08994 * 109.47007 * 45.42606 * 18 17 16 48 48 H 1.09000 * 109.46707 * 165.42062 * 18 17 16 49 49 H 0.96994 * 119.99895 * 0.02562 * 21 19 18 50 50 H 0.96991 * 120.00256 * 180.02562 * 25 24 22 51 51 H 1.09007 * 110.41472 * 280.70382 * 30 17 16 52 52 H 1.09004 * 110.41110 * 158.26673 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5648 1.4444 -0.1258 7 1 3.9994 0.9054 0.7160 8 6 3.9695 0.7604 -1.4331 9 6 4.0671 2.8652 -0.1265 10 8 3.2826 3.7857 -0.0357 11 7 5.3880 3.1130 -0.2278 12 6 5.8763 4.4942 -0.2279 13 1 5.1345 5.2545 0.0167 14 6 6.9515 4.8619 -1.2525 15 1 7.2709 4.1211 -1.9855 16 6 7.1335 6.4000 -1.5467 17 7 8.1032 6.8650 -0.5219 18 6 8.0216 8.3208 -0.3423 19 6 8.6681 9.0089 -1.5168 20 8 9.1493 8.3515 -2.4153 21 7 8.7109 10.3550 -1.5692 22 6 9.2987 10.9810 -2.6379 23 1 9.7271 10.3956 -3.4380 24 6 9.3423 12.3688 -2.6921 25 7 9.9061 12.9690 -3.7163 26 14 8.6007 13.3814 -1.3086 27 1 9.6343 13.6371 -0.2735 28 1 8.1111 14.6749 -1.8494 29 1 7.4673 12.6372 -0.7031 30 6 7.6960 6.1521 0.7161 31 6 7.3129 4.7342 0.2404 32 1 7.9013 3.8984 0.6188 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 -0.3633 0.5138 -0.8900 36 1 1.8934 -0.5139 -0.8900 37 1 1.8934 -0.5138 0.8899 38 1 1.9982 3.1544 1.3071 39 1 2.0699 1.5876 2.1491 40 1 0.5489 2.1253 1.3969 41 1 3.5349 1.2994 -2.2750 42 1 5.0559 0.7613 -1.5225 43 1 3.6062 -0.2673 -1.4331 44 1 6.0153 2.3768 -0.3008 45 1 6.1873 6.9311 -1.4435 46 1 7.5409 6.5417 -2.5478 47 1 6.9757 8.6206 -0.2761 48 1 8.5392 8.6033 0.5744 49 1 8.3258 10.8808 -0.8508 50 1 9.9369 13.9377 -3.7540 51 1 6.8378 6.6445 1.1736 52 1 8.5279 6.1055 1.4190 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265724668.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:37 Heat of formation + Delta-G solvation = -39.684320 kcal Electronic energy + Delta-G solvation = -28978.802772 eV Core-core repulsion = 24979.149813 eV Total energy + Delta-G solvation = -3999.652959 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.74264 -39.71181 -38.15217 -37.00993 -35.24180 -33.92832 -33.18961 -31.90680 -31.59516 -29.55421 -28.28202 -27.74210 -25.10294 -24.82220 -24.21020 -22.32231 -21.10641 -20.86975 -20.35438 -19.88595 -19.29767 -18.23551 -17.39888 -17.05819 -15.96758 -15.53796 -15.47811 -15.26081 -15.09715 -14.76989 -14.61031 -14.54638 -13.77048 -13.74920 -13.52460 -13.40802 -13.25084 -12.92080 -12.86470 -12.59704 -12.44145 -12.28985 -12.22699 -12.09732 -11.98248 -11.77381 -11.66922 -11.43427 -11.38996 -11.18454 -11.06854 -10.94659 -10.85071 -10.81284 -10.57711 -10.16004 -9.95570 -9.81890 -9.53569 -8.96320 -8.61798 -8.16173 -8.09558 -6.28800 -3.80050 2.27610 2.66434 3.04406 3.08533 3.16677 3.55205 3.76341 3.95163 4.12369 4.18383 4.23794 4.42379 4.45647 4.58322 4.66826 4.69471 4.81346 4.83438 4.85292 5.01984 5.05638 5.13068 5.18899 5.21654 5.22927 5.31963 5.37011 5.42492 5.44915 5.55525 5.58463 5.60958 5.63387 5.65496 5.70403 5.71141 5.79099 5.87419 5.90336 5.96369 5.98527 6.06020 6.18109 6.30642 6.32900 6.96461 7.07619 7.15979 7.60758 7.93019 8.16733 8.62934 8.97843 9.45021 9.86438 10.84427 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023427 B = 0.001796 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.926731 B =15589.219843 C =15945.094818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.071 4.071 4 H 0.077 0.923 5 C -0.161 4.161 6 C -0.106 4.106 7 H 0.097 0.903 8 C -0.148 4.148 9 C 0.522 3.478 10 O -0.530 6.530 11 N -0.700 5.700 12 C 0.102 3.898 13 H 0.133 0.867 14 C -0.160 4.160 15 H 0.122 0.878 16 C 0.068 3.932 17 N -0.483 5.483 18 C 0.031 3.969 19 C 0.455 3.545 20 O -0.558 6.558 21 N -0.593 5.593 22 C -0.304 4.304 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.882 5.882 26 Si 0.879 3.121 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.270 1.270 30 C 0.061 3.939 31 C -0.169 4.169 32 H 0.117 0.883 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.045 0.955 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.401 0.599 45 H 0.045 0.955 46 H 0.102 0.898 47 H 0.053 0.947 48 H 0.092 0.908 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.046 0.954 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.126 -26.155 12.316 32.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.090 4.090 4 H 0.096 0.904 5 C -0.218 4.218 6 C -0.127 4.127 7 H 0.115 0.885 8 C -0.206 4.206 9 C 0.309 3.691 10 O -0.405 6.405 11 N -0.349 5.349 12 C -0.005 4.005 13 H 0.151 0.849 14 C -0.181 4.181 15 H 0.140 0.860 16 C -0.059 4.059 17 N -0.207 5.207 18 C -0.101 4.101 19 C 0.240 3.760 20 O -0.439 6.439 21 N -0.233 5.233 22 C -0.432 4.432 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.522 5.522 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.195 1.195 30 C -0.067 4.067 31 C -0.189 4.189 32 H 0.135 0.865 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.236 0.764 45 H 0.063 0.937 46 H 0.121 0.879 47 H 0.071 0.929 48 H 0.110 0.890 49 H 0.202 0.798 50 H 0.083 0.917 51 H 0.064 0.936 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.753 -25.834 11.507 31.897 hybrid contribution -0.857 0.832 1.257 1.734 sum -15.610 -25.001 12.764 32.119 Atomic orbital electron populations 1.21809 0.95703 1.01441 1.02149 1.21674 0.96198 0.96085 1.02015 1.20963 0.91963 0.96142 0.99940 0.90444 1.22113 1.01265 1.02753 0.95667 1.21391 0.97997 0.92737 1.00591 0.88512 1.21870 1.01568 1.01223 0.95913 1.20695 0.81643 0.91633 0.75164 1.90658 1.54843 1.46605 1.48443 1.45362 1.07731 1.07287 1.74547 1.21847 0.91266 0.85068 1.02289 0.84945 1.24663 1.02588 0.98238 0.92582 0.85981 1.23256 0.93798 0.90077 0.98817 1.65251 1.47250 1.04060 1.04119 1.22097 0.99887 0.88681 0.99425 1.19580 0.85380 0.82425 0.88621 1.90553 1.49520 1.64210 1.39624 1.42203 1.53870 1.05378 1.21806 1.19424 1.33529 0.90437 0.99841 0.86287 1.25027 0.97550 0.96403 0.97183 1.69618 1.43391 1.09973 1.29266 0.86677 0.79579 0.80843 0.82314 1.19628 1.20212 1.19544 1.22654 0.99486 0.91120 0.93401 1.23770 0.97234 0.99097 0.98824 0.86492 0.92894 0.92406 0.92694 0.91613 0.92036 0.89956 0.93578 0.92711 0.91810 0.92145 0.90918 0.76417 0.93722 0.87929 0.92897 0.89001 0.79756 0.91654 0.93627 0.89341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.67 37.16 0.36 -0.49 16 2 C -0.12 -0.66 5.19 -26.73 -0.14 -0.80 16 3 C -0.07 -0.51 1.61 -90.62 -0.15 -0.66 16 4 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 5 C -0.16 -1.33 8.63 37.16 0.32 -1.01 16 6 C -0.11 -0.68 2.32 -91.78 -0.21 -0.90 16 7 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 8 C -0.15 -0.75 8.74 37.16 0.32 -0.42 16 9 C 0.52 5.02 6.86 -10.99 -0.08 4.94 16 10 O -0.53 -7.12 13.23 5.55 0.07 -7.05 16 11 N -0.70 -5.86 5.46 -53.81 -0.29 -6.15 16 12 C 0.10 1.08 5.93 -67.93 -0.40 0.67 16 13 H 0.13 1.66 7.40 -51.93 -0.38 1.28 16 14 C -0.16 -1.90 7.32 -87.49 -0.64 -2.54 16 15 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 16 C 0.07 1.05 5.79 -0.37 0.00 1.05 16 17 N -0.48 -7.74 4.98 -229.20 -1.14 -8.88 16 18 C 0.03 0.52 5.32 -4.97 -0.03 0.50 16 19 C 0.45 10.42 7.63 -10.99 -0.08 10.34 16 20 O -0.56 -15.04 14.80 5.55 0.08 -14.95 16 21 N -0.59 -14.26 5.09 -10.96 -0.06 -14.31 16 22 C -0.30 -8.66 10.16 -14.93 -0.15 -8.81 16 23 H 0.12 3.87 7.39 -52.49 -0.39 3.49 16 24 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 25 N -0.88 -25.96 13.96 55.50 0.77 -25.18 16 26 Si 0.88 19.55 27.74 -169.99 -4.71 14.84 16 27 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 28 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 29 H -0.27 -5.48 6.52 56.52 0.37 -5.12 16 30 C 0.06 0.74 6.26 -2.19 -0.01 0.72 16 31 C -0.17 -1.76 6.97 -89.31 -0.62 -2.38 16 32 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.33 6.56 -51.93 -0.34 -0.01 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.31 6.17 -51.93 -0.32 -0.01 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.08 0.89 5.51 -51.93 -0.29 0.61 16 39 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.05 0.42 6.57 -51.93 -0.34 0.08 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.24 7.57 -51.93 -0.39 -0.15 16 43 H 0.07 0.28 6.32 -51.93 -0.33 -0.05 16 44 H 0.40 2.28 8.24 -40.82 -0.34 1.94 16 45 H 0.04 0.67 7.75 -51.93 -0.40 0.27 16 46 H 0.10 1.88 7.23 -51.93 -0.38 1.50 16 47 H 0.05 0.80 7.77 -51.93 -0.40 0.40 16 48 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 49 H 0.37 7.82 5.76 -40.82 -0.24 7.58 16 50 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 51 H 0.05 0.51 8.00 -51.92 -0.42 0.10 16 52 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 405.87 15.07 6.12 6.12 Total: -1.00 -34.27 405.87 -9.53 -43.80 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -8.76 Total: 10.50 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -1.61 Total: 1.27 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.72 Total: -54.53 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: 0.16 Total: -22.00 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.71 Total: 14.84 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.27 -9.53 -43.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265724668.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.119 kcal (2) G-P(sol) polarization free energy of solvation -34.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds