Wall clock time and date at job start Tue Mar 31 2020 20:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47209 * 2 1 4 4 H 1.09002 * 109.47241 * 55.00120 * 3 2 1 5 5 C 1.53000 * 109.47346 * 295.00575 * 3 2 1 6 6 C 1.52997 * 109.47291 * 175.00142 * 3 2 1 7 7 H 1.09000 * 109.46754 * 60.00311 * 6 3 2 8 8 C 1.53000 * 109.47279 * 300.00474 * 6 3 2 9 9 C 1.50702 * 109.47343 * 180.02562 * 6 3 2 10 10 O 1.21282 * 119.99647 * 0.02562 * 9 6 3 11 11 N 1.34777 * 120.00030 * 180.02562 * 9 6 3 12 12 C 1.46501 * 119.99816 * 180.02562 * 11 9 6 13 13 H 1.08993 * 115.49524 * 9.61168 * 12 11 9 14 14 C 1.57018 * 118.25111 * 223.47048 * 12 11 9 15 15 H 1.08998 * 121.18711 * 3.75352 * 14 12 11 16 16 C 1.54377 * 118.21057 * 161.86611 * 14 12 11 17 17 N 1.48550 * 104.59714 * 86.26158 * 16 14 12 18 18 C 1.46900 * 111.00124 * 200.96017 * 17 16 14 19 19 C 1.50704 * 109.47180 * 285.41690 * 18 17 16 20 20 O 1.21287 * 119.99706 * 0.02562 * 19 18 17 21 21 N 1.34780 * 119.99864 * 179.97438 * 19 18 17 22 22 C 1.37102 * 119.99440 * 180.02562 * 21 19 18 23 23 H 1.07995 * 120.00237 * 0.02562 * 22 21 19 24 24 C 1.38946 * 119.99524 * 180.02562 * 22 21 19 25 25 N 1.31410 * 119.99727 * 180.02562 * 24 22 21 26 26 Si 1.86804 * 120.00262 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.46953 * 90.00105 * 26 24 22 28 28 H 1.48500 * 109.47098 * 209.99788 * 26 24 22 29 29 H 1.48496 * 109.47149 * 330.00316 * 26 24 22 30 30 C 1.48561 * 104.22474 * 320.51503 * 17 16 14 31 31 C 1.53000 * 117.44177 * 155.00206 * 12 11 9 32 32 H 1.09002 * 119.52778 * 355.90387 * 31 12 11 33 33 H 1.08998 * 109.46404 * 299.99885 * 1 2 3 34 34 H 1.09000 * 109.47063 * 59.99470 * 1 2 3 35 35 H 1.08995 * 109.46987 * 179.97438 * 1 2 3 36 36 H 1.09006 * 109.46681 * 240.00324 * 2 1 3 37 37 H 1.08997 * 109.47539 * 120.00689 * 2 1 3 38 38 H 1.08998 * 109.47410 * 59.99429 * 5 3 2 39 39 H 1.08998 * 109.47172 * 180.02562 * 5 3 2 40 40 H 1.09000 * 109.47094 * 299.99931 * 5 3 2 41 41 H 1.08998 * 109.47410 * 180.02562 * 8 6 3 42 42 H 1.09008 * 109.47164 * 299.99967 * 8 6 3 43 43 H 1.08998 * 109.47172 * 59.99481 * 8 6 3 44 44 H 0.96998 * 120.00017 * 359.97438 * 11 9 6 45 45 H 1.09007 * 110.40921 * 327.47874 * 16 14 12 46 46 H 1.09003 * 110.51007 * 205.09750 * 16 14 12 47 47 H 1.09001 * 109.47233 * 45.41710 * 18 17 16 48 48 H 1.08997 * 109.47696 * 165.42130 * 18 17 16 49 49 H 0.96999 * 120.00117 * 0.02562 * 21 19 18 50 50 H 0.96999 * 119.99836 * 180.02562 * 25 24 22 51 51 H 1.08997 * 110.41547 * 280.70846 * 30 17 16 52 52 H 1.09001 * 110.41241 * 158.26019 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5649 1.4443 0.1257 7 1 3.9994 0.9054 -0.7162 8 6 3.9697 0.7602 1.4330 9 6 4.0672 2.8652 0.1263 10 8 3.2827 3.7857 0.0357 11 7 5.3881 3.1129 0.2276 12 6 5.8763 4.4942 0.2288 13 1 5.1082 5.2632 0.3091 14 6 7.1446 4.8349 -0.6320 15 1 7.6164 4.0827 -1.2641 16 6 7.4135 6.3144 -0.9813 17 7 8.1768 6.8404 0.1794 18 6 8.0863 8.3049 0.2491 19 6 8.9568 8.9135 -0.8200 20 8 9.5899 8.1976 -1.5668 21 7 9.0309 10.2533 -0.9468 22 6 9.8224 10.8069 -1.9198 23 1 10.3861 10.1695 -2.5848 24 6 9.8992 12.1881 -2.0503 25 7 10.6575 12.7187 -2.9832 26 14 8.9236 13.2906 -0.9005 27 1 9.7439 13.6070 0.2963 28 1 8.5688 14.5492 -1.6043 29 1 7.6827 12.5921 -0.4795 30 6 7.5287 6.2102 1.3584 31 6 7.2204 4.7664 0.9072 32 1 7.7367 3.9555 1.4211 33 1 -0.3632 0.5138 0.8900 34 1 -0.3633 0.5139 -0.8899 35 1 -0.3633 -1.0276 -0.0005 36 1 1.8933 -0.5138 -0.8901 37 1 1.8935 -0.5139 0.8899 38 1 0.5489 2.1253 -1.3968 39 1 1.9990 3.1541 -1.3074 40 1 2.0698 1.5876 -2.1491 41 1 5.0560 0.7619 1.5227 42 1 3.5351 1.2992 2.2749 43 1 3.6064 -0.2674 1.4329 44 1 6.0155 2.3767 0.3005 45 1 6.4738 6.8550 -1.0949 46 1 8.0070 6.3899 -1.8925 47 1 7.0521 8.6128 0.0945 48 1 8.4236 8.6437 1.2287 49 1 8.5242 10.8258 -0.3498 50 1 10.7115 13.6829 -3.0740 51 1 6.6071 6.7345 1.6110 52 1 8.2099 6.2054 2.2093 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265724670.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:40 Heat of formation + Delta-G solvation = -39.742638 kcal Electronic energy + Delta-G solvation = -28952.169711 eV Core-core repulsion = 24952.514223 eV Total energy + Delta-G solvation = -3999.655488 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.69979 -39.71107 -38.12089 -37.02216 -35.19215 -33.93069 -33.15608 -31.91578 -31.59136 -29.55232 -28.37542 -27.75988 -25.13096 -24.82567 -24.20843 -22.36687 -21.08004 -20.86880 -20.28008 -19.90124 -19.29524 -18.23648 -17.41444 -17.05212 -15.96268 -15.58777 -15.50725 -15.26258 -15.02364 -14.77320 -14.62130 -14.55442 -13.87200 -13.68351 -13.53958 -13.40733 -13.24674 -12.89972 -12.86776 -12.58423 -12.39140 -12.30316 -12.27849 -12.10329 -11.96979 -11.79976 -11.66909 -11.46758 -11.38334 -11.18494 -11.04627 -10.94620 -10.82947 -10.80985 -10.57667 -10.17004 -9.95533 -9.82642 -9.53540 -8.91768 -8.61358 -8.16086 -8.09161 -6.28742 -3.79993 2.25413 2.64453 3.04476 3.08585 3.16709 3.49391 3.76614 3.92235 4.12378 4.17800 4.23124 4.41656 4.46686 4.53496 4.66408 4.67868 4.80726 4.83360 4.88382 5.01285 5.06532 5.17481 5.20966 5.21498 5.24752 5.31943 5.36377 5.42782 5.46604 5.55072 5.56767 5.61112 5.63623 5.66002 5.70140 5.71547 5.78370 5.88081 5.90477 5.97738 5.98860 6.05946 6.18570 6.32036 6.34782 6.96799 7.07883 7.15339 7.60871 7.92026 8.16816 8.63050 8.97917 9.45121 9.86562 10.84481 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023948 B = 0.001788 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.915498 B =15651.849245 C =16107.033692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.071 4.071 4 H 0.076 0.924 5 C -0.162 4.162 6 C -0.106 4.106 7 H 0.098 0.902 8 C -0.148 4.148 9 C 0.522 3.478 10 O -0.529 6.529 11 N -0.698 5.698 12 C 0.104 3.896 13 H 0.134 0.866 14 C -0.165 4.165 15 H 0.120 0.880 16 C 0.067 3.933 17 N -0.483 5.483 18 C 0.031 3.969 19 C 0.455 3.545 20 O -0.558 6.558 21 N -0.593 5.593 22 C -0.304 4.304 23 H 0.119 0.881 24 C 0.041 3.959 25 N -0.882 5.882 26 Si 0.879 3.121 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.270 1.270 30 C 0.060 3.940 31 C -0.164 4.164 32 H 0.117 0.883 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.046 0.954 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.402 0.598 45 H 0.043 0.957 46 H 0.104 0.896 47 H 0.053 0.947 48 H 0.091 0.909 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.046 0.954 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.659 -25.338 11.286 32.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.089 4.089 4 H 0.095 0.905 5 C -0.219 4.219 6 C -0.128 4.128 7 H 0.116 0.884 8 C -0.205 4.205 9 C 0.309 3.691 10 O -0.405 6.405 11 N -0.347 5.347 12 C -0.002 4.002 13 H 0.152 0.848 14 C -0.185 4.185 15 H 0.138 0.862 16 C -0.061 4.061 17 N -0.207 5.207 18 C -0.101 4.101 19 C 0.240 3.760 20 O -0.439 6.439 21 N -0.233 5.233 22 C -0.432 4.432 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.523 5.523 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.195 1.195 30 C -0.068 4.068 31 C -0.184 4.184 32 H 0.135 0.865 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.236 0.764 45 H 0.061 0.939 46 H 0.122 0.878 47 H 0.071 0.929 48 H 0.110 0.890 49 H 0.202 0.798 50 H 0.083 0.917 51 H 0.064 0.936 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.141 -25.077 10.562 32.159 hybrid contribution -1.028 0.939 0.931 1.675 sum -18.168 -24.138 11.493 32.324 Atomic orbital electron populations 1.21809 0.95705 1.01441 1.02142 1.21675 0.96197 0.96087 1.02025 1.20959 0.91917 0.96131 0.99940 0.90518 1.22119 1.01268 1.02821 0.95670 1.21401 0.98034 0.92726 1.00618 0.88408 1.21864 1.01526 1.01239 0.95872 1.20695 0.81606 0.91646 0.75155 1.90657 1.54891 1.46601 1.48361 1.45314 1.07718 1.07294 1.74397 1.22413 0.90525 0.84996 1.02290 0.84820 1.24640 1.01050 0.98801 0.94055 0.86224 1.22687 0.96377 0.90692 0.96336 1.65286 1.49571 1.04702 1.01132 1.22098 0.98927 0.88754 1.00323 1.19582 0.86443 0.82534 0.87419 1.90550 1.47237 1.60171 1.45968 1.42205 1.43342 1.05428 1.32293 1.19423 1.22193 0.91469 1.10144 0.86292 1.25026 0.97383 0.96605 0.97143 1.69621 1.38322 1.12135 1.32175 0.86678 0.80211 0.81257 0.81277 1.19629 1.20210 1.19542 1.22674 0.97754 0.91519 0.94900 1.23837 0.99293 0.98818 0.96496 0.86521 0.92747 0.92362 0.92892 0.91981 0.91655 0.92700 0.89910 0.93494 0.92158 0.91920 0.90906 0.76388 0.93907 0.87786 0.92900 0.89040 0.79755 0.91658 0.93627 0.89349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.67 37.16 0.36 -0.48 16 2 C -0.12 -0.66 5.19 -26.73 -0.14 -0.79 16 3 C -0.07 -0.50 1.61 -90.62 -0.15 -0.65 16 4 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 5 C -0.16 -1.38 8.63 37.16 0.32 -1.06 16 6 C -0.11 -0.68 2.32 -91.77 -0.21 -0.89 16 7 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 8 C -0.15 -0.67 8.74 37.16 0.32 -0.35 16 9 C 0.52 4.98 6.86 -10.98 -0.08 4.90 16 10 O -0.53 -7.06 13.23 5.56 0.07 -6.99 16 11 N -0.70 -5.81 5.50 -51.70 -0.28 -6.09 16 12 C 0.10 1.10 6.15 -65.75 -0.40 0.70 16 13 H 0.13 1.66 7.40 -51.93 -0.38 1.28 16 14 C -0.16 -1.97 7.26 -87.06 -0.63 -2.60 16 15 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 16 C 0.07 1.03 5.75 -2.19 -0.01 1.02 16 17 N -0.48 -7.76 4.98 -231.41 -1.15 -8.91 16 18 C 0.03 0.52 5.32 -4.97 -0.03 0.50 16 19 C 0.45 10.45 7.63 -10.98 -0.08 10.36 16 20 O -0.56 -15.06 14.80 5.55 0.08 -14.97 16 21 N -0.59 -14.27 5.09 -10.96 -0.06 -14.33 16 22 C -0.30 -8.66 10.16 -14.93 -0.15 -8.81 16 23 H 0.12 3.87 7.39 -52.49 -0.39 3.49 16 24 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 25 N -0.88 -25.97 13.96 55.50 0.77 -25.19 16 26 Si 0.88 19.56 27.74 -169.99 -4.71 14.85 16 27 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 28 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 29 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 30 C 0.06 0.72 6.25 -2.18 -0.01 0.70 16 31 C -0.16 -1.71 6.91 -89.23 -0.62 -2.32 16 32 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.34 6.56 -51.93 -0.34 -0.01 16 35 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.29 6.17 -51.93 -0.32 -0.03 16 38 H 0.05 0.43 6.56 -51.93 -0.34 0.09 16 39 H 0.08 0.93 5.51 -51.93 -0.29 0.64 16 40 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.21 7.56 -51.93 -0.39 -0.18 16 42 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 43 H 0.07 0.25 6.32 -51.93 -0.33 -0.08 16 44 H 0.40 2.26 8.24 -40.82 -0.34 1.93 16 45 H 0.04 0.65 7.75 -51.93 -0.40 0.25 16 46 H 0.10 1.91 7.23 -51.93 -0.38 1.53 16 47 H 0.05 0.80 7.77 -51.93 -0.40 0.40 16 48 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 49 H 0.37 7.83 5.76 -40.82 -0.24 7.59 16 50 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 51 H 0.05 0.51 7.99 -51.93 -0.41 0.10 16 52 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 405.96 15.07 6.12 6.12 Total: -1.00 -34.29 405.96 -9.53 -43.82 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -8.76 Total: 10.44 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -1.61 Total: 1.26 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.72 Total: -54.52 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: 0.16 Total: -21.96 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.71 Total: 14.85 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.29 -9.53 -43.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265724670.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.073 kcal (2) G-P(sol) polarization free energy of solvation -34.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds