Wall clock time and date at job start Tue Mar 31 2020 20:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47209 * 2 1 4 4 H 1.09002 * 109.47241 * 55.00120 * 3 2 1 5 5 C 1.53000 * 109.47346 * 295.00575 * 3 2 1 6 6 C 1.52997 * 109.47291 * 175.00142 * 3 2 1 7 7 H 1.09000 * 109.46754 * 60.00311 * 6 3 2 8 8 C 1.53000 * 109.47279 * 300.00474 * 6 3 2 9 9 C 1.50702 * 109.47343 * 180.02562 * 6 3 2 10 10 O 1.21282 * 119.99647 * 0.02562 * 9 6 3 11 11 N 1.34777 * 120.00030 * 180.02562 * 9 6 3 12 12 C 1.46501 * 119.99816 * 180.02562 * 11 9 6 13 13 H 1.08993 * 115.49524 * 9.61168 * 12 11 9 14 14 C 1.57018 * 118.25111 * 223.47048 * 12 11 9 15 15 H 1.08998 * 121.18711 * 3.75352 * 14 12 11 16 16 C 1.54377 * 118.21057 * 161.86611 * 14 12 11 17 17 N 1.48550 * 104.59714 * 86.26158 * 16 14 12 18 18 C 1.46900 * 111.00124 * 200.96017 * 17 16 14 19 19 C 1.50704 * 109.47180 * 285.41690 * 18 17 16 20 20 O 1.21287 * 119.99706 * 0.02562 * 19 18 17 21 21 N 1.34780 * 119.99864 * 179.97438 * 19 18 17 22 22 C 1.37102 * 119.99440 * 180.02562 * 21 19 18 23 23 H 1.07995 * 120.00237 * 0.02562 * 22 21 19 24 24 C 1.38946 * 119.99524 * 180.02562 * 22 21 19 25 25 N 1.31410 * 119.99727 * 180.02562 * 24 22 21 26 26 Si 1.86804 * 120.00262 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.46953 * 90.00105 * 26 24 22 28 28 H 1.48500 * 109.47098 * 209.99788 * 26 24 22 29 29 H 1.48496 * 109.47149 * 330.00316 * 26 24 22 30 30 C 1.48561 * 104.22474 * 320.51503 * 17 16 14 31 31 C 1.53000 * 117.44177 * 155.00206 * 12 11 9 32 32 H 1.09002 * 119.52778 * 355.90387 * 31 12 11 33 33 H 1.08998 * 109.46404 * 299.99885 * 1 2 3 34 34 H 1.09000 * 109.47063 * 59.99470 * 1 2 3 35 35 H 1.08995 * 109.46987 * 179.97438 * 1 2 3 36 36 H 1.09006 * 109.46681 * 240.00324 * 2 1 3 37 37 H 1.08997 * 109.47539 * 120.00689 * 2 1 3 38 38 H 1.08998 * 109.47410 * 59.99429 * 5 3 2 39 39 H 1.08998 * 109.47172 * 180.02562 * 5 3 2 40 40 H 1.09000 * 109.47094 * 299.99931 * 5 3 2 41 41 H 1.08998 * 109.47410 * 180.02562 * 8 6 3 42 42 H 1.09008 * 109.47164 * 299.99967 * 8 6 3 43 43 H 1.08998 * 109.47172 * 59.99481 * 8 6 3 44 44 H 0.96998 * 120.00017 * 359.97438 * 11 9 6 45 45 H 1.09007 * 110.40921 * 327.47874 * 16 14 12 46 46 H 1.09003 * 110.51007 * 205.09750 * 16 14 12 47 47 H 1.09001 * 109.47233 * 45.41710 * 18 17 16 48 48 H 1.08997 * 109.47696 * 165.42130 * 18 17 16 49 49 H 0.96999 * 120.00117 * 0.02562 * 21 19 18 50 50 H 0.96999 * 119.99836 * 180.02562 * 25 24 22 51 51 H 1.08997 * 110.41547 * 280.70846 * 30 17 16 52 52 H 1.09001 * 110.41241 * 158.26019 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5649 1.4443 0.1257 7 1 3.9994 0.9054 -0.7162 8 6 3.9697 0.7602 1.4330 9 6 4.0672 2.8652 0.1263 10 8 3.2827 3.7857 0.0357 11 7 5.3881 3.1129 0.2276 12 6 5.8763 4.4942 0.2288 13 1 5.1082 5.2632 0.3091 14 6 7.1446 4.8349 -0.6320 15 1 7.6164 4.0827 -1.2641 16 6 7.4135 6.3144 -0.9813 17 7 8.1768 6.8404 0.1794 18 6 8.0863 8.3049 0.2491 19 6 8.9568 8.9135 -0.8200 20 8 9.5899 8.1976 -1.5668 21 7 9.0309 10.2533 -0.9468 22 6 9.8224 10.8069 -1.9198 23 1 10.3861 10.1695 -2.5848 24 6 9.8992 12.1881 -2.0503 25 7 10.6575 12.7187 -2.9832 26 14 8.9236 13.2906 -0.9005 27 1 9.7439 13.6070 0.2963 28 1 8.5688 14.5492 -1.6043 29 1 7.6827 12.5921 -0.4795 30 6 7.5287 6.2102 1.3584 31 6 7.2204 4.7664 0.9072 32 1 7.7367 3.9555 1.4211 33 1 -0.3632 0.5138 0.8900 34 1 -0.3633 0.5139 -0.8899 35 1 -0.3633 -1.0276 -0.0005 36 1 1.8933 -0.5138 -0.8901 37 1 1.8935 -0.5139 0.8899 38 1 0.5489 2.1253 -1.3968 39 1 1.9990 3.1541 -1.3074 40 1 2.0698 1.5876 -2.1491 41 1 5.0560 0.7619 1.5227 42 1 3.5351 1.2992 2.2749 43 1 3.6064 -0.2674 1.4329 44 1 6.0155 2.3767 0.3005 45 1 6.4738 6.8550 -1.0949 46 1 8.0070 6.3899 -1.8925 47 1 7.0521 8.6128 0.0945 48 1 8.4236 8.6437 1.2287 49 1 8.5242 10.8258 -0.3498 50 1 10.7115 13.6829 -3.0740 51 1 6.6071 6.7345 1.6110 52 1 8.2099 6.2054 2.2093 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265724670.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:39 Heat of formation + Delta-G solvation = -65.543957 kcal Electronic energy + Delta-G solvation = -28953.288541 eV Core-core repulsion = 24952.514223 eV Total energy + Delta-G solvation = -4000.774317 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.53532 -40.78750 -39.78886 -37.66327 -36.31973 -35.81783 -34.05742 -33.71568 -32.50951 -30.10389 -29.42599 -29.18438 -26.54987 -25.42213 -25.18293 -23.44662 -22.02342 -21.60078 -21.33248 -21.13095 -20.50556 -20.15725 -18.17513 -17.90604 -17.61072 -16.86366 -16.49832 -16.31175 -16.08481 -16.00964 -15.61618 -15.17663 -15.13474 -14.87443 -14.83929 -14.43280 -14.27605 -14.02550 -13.95260 -13.84951 -13.41267 -13.35472 -13.15903 -13.00734 -12.80000 -12.68806 -12.54483 -12.51407 -12.42999 -12.35134 -12.11870 -11.99307 -11.87157 -11.63737 -11.50509 -11.46294 -11.29782 -11.10288 -10.56286 -10.42154 -10.24757 -9.73973 -9.39328 -8.41792 -6.02552 1.29387 1.34658 1.43404 1.51502 1.89971 1.95431 2.22215 2.57836 2.68398 3.13470 3.22399 3.50067 3.62450 3.66689 3.74559 3.81197 3.93884 4.05216 4.16966 4.17238 4.26447 4.32979 4.37292 4.41000 4.44704 4.51880 4.56667 4.62047 4.67027 4.77192 4.77304 4.84369 4.91089 4.94840 4.99706 5.09777 5.13193 5.13586 5.16244 5.23419 5.34584 5.36932 5.45463 5.51958 5.55259 5.64600 5.78962 5.87451 5.99489 6.50465 6.59456 6.87944 7.23300 7.39312 7.96864 8.75934 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023948 B = 0.001788 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.915498 B =15651.849245 C =16107.033692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.069 4.069 4 H 0.058 0.942 5 C -0.160 4.160 6 C -0.100 4.100 7 H 0.117 0.883 8 C -0.144 4.144 9 C 0.517 3.483 10 O -0.572 6.572 11 N -0.686 5.686 12 C 0.117 3.883 13 H 0.116 0.884 14 C -0.177 4.177 15 H 0.125 0.875 16 C 0.066 3.934 17 N -0.508 5.508 18 C 0.042 3.958 19 C 0.452 3.548 20 O -0.607 6.607 21 N -0.593 5.593 22 C -0.328 4.328 23 H 0.055 0.945 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.965 3.035 27 H -0.255 1.255 28 H -0.275 1.275 29 H -0.234 1.234 30 C 0.058 3.942 31 C -0.143 4.143 32 H 0.144 0.856 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.052 0.948 43 H 0.089 0.911 44 H 0.418 0.582 45 H 0.040 0.960 46 H 0.061 0.939 47 H 0.078 0.922 48 H 0.125 0.875 49 H 0.389 0.611 50 H 0.279 0.721 51 H 0.058 0.942 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.443 -26.947 14.754 36.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.088 4.088 4 H 0.077 0.923 5 C -0.217 4.217 6 C -0.121 4.121 7 H 0.135 0.865 8 C -0.202 4.202 9 C 0.306 3.694 10 O -0.451 6.451 11 N -0.336 5.336 12 C 0.009 3.991 13 H 0.133 0.867 14 C -0.198 4.198 15 H 0.143 0.857 16 C -0.062 4.062 17 N -0.233 5.233 18 C -0.089 4.089 19 C 0.240 3.760 20 O -0.490 6.490 21 N -0.235 5.235 22 C -0.457 4.457 23 H 0.073 0.927 24 C -0.213 4.213 25 N -0.575 5.575 26 Si 0.784 3.216 27 H -0.180 1.180 28 H -0.200 1.200 29 H -0.157 1.157 30 C -0.069 4.069 31 C -0.163 4.163 32 H 0.162 0.838 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.108 0.892 44 H 0.256 0.744 45 H 0.058 0.942 46 H 0.080 0.920 47 H 0.096 0.904 48 H 0.143 0.857 49 H 0.224 0.776 50 H 0.088 0.912 51 H 0.076 0.924 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -18.920 -26.736 14.056 35.642 hybrid contribution -0.424 1.360 -0.260 1.448 sum -19.344 -25.376 13.796 34.763 Atomic orbital electron populations 1.21828 0.95982 1.01919 1.01594 1.21645 0.95943 0.94695 1.03112 1.20930 0.92624 0.97018 0.98228 0.92317 1.22071 1.01321 1.01319 0.97008 1.21432 0.97307 0.90771 1.02570 0.86531 1.21880 1.02563 1.01664 0.94049 1.21352 0.81455 0.92600 0.74017 1.90654 1.56005 1.48167 1.50275 1.45216 1.07815 1.06879 1.73679 1.22136 0.89818 0.85842 1.01306 0.86675 1.24479 1.03047 0.96648 0.95630 0.85666 1.22517 0.95262 0.93413 0.95027 1.65216 1.51025 1.04226 1.02783 1.22014 0.98554 0.89360 0.98982 1.20846 0.85662 0.81897 0.87611 1.90532 1.49163 1.61292 1.48054 1.42032 1.43336 1.06243 1.31896 1.18997 1.23711 0.91688 1.11329 0.92724 1.26098 0.98282 0.97880 0.99043 1.69804 1.40185 1.13005 1.34523 0.85370 0.79562 0.78149 0.78470 1.17960 1.20012 1.15701 1.22785 0.98486 0.92020 0.93579 1.23916 0.98693 0.98865 0.94826 0.83848 0.93196 0.93093 0.91866 0.91170 0.90171 0.92626 0.92875 0.92745 0.90595 0.92926 0.89197 0.74447 0.94179 0.92033 0.90442 0.85689 0.77550 0.91158 0.92353 0.87552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.67 71.98 0.70 -0.78 16 2 C -0.12 -0.99 5.19 30.60 0.16 -0.83 16 3 C -0.07 -0.91 1.61 -10.79 -0.02 -0.92 16 4 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 5 C -0.16 -2.71 8.63 71.98 0.62 -2.09 16 6 C -0.10 -1.06 2.32 -11.54 -0.03 -1.08 16 7 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 8 C -0.14 -0.86 8.74 71.98 0.63 -0.23 16 9 C 0.52 9.22 6.86 87.66 0.60 9.82 16 10 O -0.57 -15.38 13.23 -3.04 -0.04 -15.42 16 11 N -0.69 -9.93 5.50 -435.88 -2.40 -12.32 16 12 C 0.12 2.26 6.15 46.40 0.29 2.55 16 13 H 0.12 2.77 7.40 -2.39 -0.02 2.75 16 14 C -0.18 -4.08 7.26 -8.49 -0.06 -4.14 16 15 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 16 C 0.07 2.07 5.75 86.45 0.50 2.56 16 17 N -0.51 -15.71 4.98 -886.05 -4.41 -20.12 16 18 C 0.04 1.36 5.32 85.56 0.46 1.81 16 19 C 0.45 21.08 7.63 87.66 0.67 21.75 16 20 O -0.61 -34.54 14.80 -3.05 -0.05 -34.58 16 21 N -0.59 -28.69 5.09 -306.98 -1.56 -30.25 16 22 C -0.33 -19.60 10.16 84.04 0.85 -18.75 16 23 H 0.05 3.88 7.39 -2.91 -0.02 3.86 16 24 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 25 N -0.93 -57.10 13.96 21.66 0.30 -56.80 16 26 Si 0.96 39.49 27.74 68.60 1.90 41.39 16 27 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 28 H -0.28 -11.17 7.11 99.48 0.71 -10.47 16 29 H -0.23 -8.13 6.52 99.48 0.65 -7.48 16 30 C 0.06 1.22 6.25 86.45 0.54 1.76 16 31 C -0.14 -2.56 6.91 -9.90 -0.07 -2.63 16 32 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.05 0.55 6.56 -2.39 -0.02 0.53 16 35 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 37 H 0.08 0.46 6.17 -2.39 -0.01 0.45 16 38 H 0.05 0.89 6.56 -2.39 -0.02 0.87 16 39 H 0.05 1.24 5.51 -2.39 -0.01 1.23 16 40 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 41 H 0.08 0.23 7.56 -2.39 -0.02 0.22 16 42 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 43 H 0.09 0.27 6.32 -2.39 -0.02 0.25 16 44 H 0.42 3.34 8.24 -92.71 -0.76 2.58 16 45 H 0.04 1.24 7.75 -2.38 -0.02 1.22 16 46 H 0.06 2.43 7.23 -2.39 -0.02 2.41 16 47 H 0.08 2.14 7.77 -2.39 -0.02 2.12 16 48 H 0.13 3.20 8.08 -2.39 -0.02 3.18 16 49 H 0.39 15.60 5.76 -92.71 -0.53 15.06 16 50 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 51 H 0.06 1.11 7.99 -2.39 -0.02 1.09 16 52 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -82.92 405.96 -0.37 -83.29 By element: Atomic # 1 Polarization: 36.79 SS G_CDS: -0.42 Total: 36.37 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 6.30 Total: 8.44 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -8.07 Total: -119.49 kcal Atomic # 8 Polarization: -49.92 SS G_CDS: -0.09 Total: -50.00 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 1.90 Total: 41.39 kcal Total: -82.92 -0.37 -83.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265724670.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.744 kcal (2) G-P(sol) polarization free energy of solvation -82.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds