Wall clock time and date at job start Tue Mar 31 2020 20:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50707 * 119.99845 * 2 1 4 4 H 1.09002 * 109.46837 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.47180 * 119.99855 * 3 2 1 6 6 C 1.52999 * 109.47131 * 185.52557 * 5 3 2 7 7 C 1.53006 * 109.46920 * 239.99871 * 3 2 1 8 8 C 1.50699 * 109.46783 * 65.49369 * 7 3 2 9 9 O 1.21281 * 120.00545 * 6.14292 * 8 7 3 10 10 N 1.34781 * 119.99694 * 186.13515 * 8 7 3 11 11 C 1.46499 * 119.99841 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47042 * 187.20566 * 11 10 8 13 13 H 1.09007 * 110.72476 * 302.95823 * 12 11 10 14 14 C 1.54931 * 110.67119 * 179.86178 * 12 11 10 15 15 C 1.54594 * 102.92695 * 204.14952 * 14 12 11 16 16 C 1.53997 * 105.13601 * 21.95921 * 15 14 12 17 17 N 1.47905 * 107.05813 * 1.22166 * 16 15 14 18 18 C 1.46900 * 110.99843 * 214.15733 * 17 16 15 19 19 C 1.50702 * 109.47172 * 63.27031 * 18 17 16 20 20 O 1.21292 * 119.99801 * 353.61899 * 19 18 17 21 21 N 1.34773 * 120.00197 * 173.61792 * 19 18 17 22 22 C 1.37087 * 120.00246 * 179.97438 * 21 19 18 23 23 H 1.08003 * 119.99920 * 0.02562 * 22 21 19 24 24 C 1.38950 * 120.00335 * 179.72453 * 22 21 19 25 25 N 1.31414 * 119.99883 * 0.27742 * 24 22 21 26 26 Si 1.86800 * 120.00542 * 180.27518 * 24 22 21 27 27 H 1.48502 * 109.47045 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47392 * 119.99991 * 26 24 22 29 29 H 1.48499 * 109.47436 * 240.00553 * 26 24 22 30 30 H 1.07997 * 120.00299 * 0.02562 * 1 2 3 31 31 H 1.07996 * 119.99796 * 180.02562 * 1 2 3 32 32 H 1.07997 * 120.00299 * 179.97438 * 2 1 3 33 33 H 1.09003 * 109.47195 * 305.53086 * 5 3 2 34 34 H 1.09002 * 109.47197 * 65.52761 * 5 3 2 35 35 H 1.09000 * 109.47359 * 303.89674 * 6 5 3 36 36 H 1.09009 * 109.46701 * 63.89314 * 6 5 3 37 37 H 1.08994 * 109.46868 * 183.89286 * 6 5 3 38 38 H 1.08999 * 109.46875 * 305.49717 * 7 3 2 39 39 H 1.09002 * 109.46635 * 185.49422 * 7 3 2 40 40 H 0.97001 * 119.99840 * 0.02562 * 10 8 7 41 41 H 1.09000 * 109.47171 * 67.20687 * 11 10 8 42 42 H 1.08996 * 109.47460 * 307.20386 * 11 10 8 43 43 H 1.09004 * 110.72464 * 85.78862 * 14 12 11 44 44 H 1.09009 * 110.72441 * 322.51436 * 14 12 11 45 45 H 1.08997 * 110.31207 * 263.04349 * 15 14 12 46 46 H 1.08997 * 110.30651 * 140.86631 * 15 14 12 47 47 H 1.08997 * 109.91396 * 241.86879 * 16 15 14 48 48 H 1.08993 * 110.08228 * 120.66941 * 16 15 14 49 49 H 1.09001 * 109.47392 * 303.26918 * 18 17 16 50 50 H 1.09004 * 109.46739 * 183.27049 * 18 17 16 51 51 H 0.97008 * 119.99929 * 359.97438 * 21 19 18 52 52 H 0.97001 * 120.00162 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3863 1.2493 6 6 3.6017 2.7654 1.3206 7 6 2.9431 1.3862 -1.2493 8 6 2.0695 1.4422 -2.4759 9 8 0.8656 1.5321 -2.3595 10 7 2.6261 1.3927 -3.7025 11 6 1.7769 1.4477 -4.8949 12 6 2.6292 1.1946 -6.1401 13 1 3.4442 1.9157 -6.2028 14 6 1.7565 1.2433 -7.4193 15 6 2.5656 0.3897 -8.4226 16 6 3.4669 -0.5064 -7.5530 17 7 3.1565 -0.1939 -6.1410 18 6 4.3574 -0.3016 -5.3018 19 6 5.3714 0.7226 -5.7420 20 8 5.1681 1.3896 -6.7345 21 7 6.5041 0.8974 -5.0330 22 6 7.4268 1.8288 -5.4337 23 1 7.2458 2.4227 -6.3174 24 6 8.5920 2.0131 -4.6995 25 7 8.8121 1.2907 -3.6240 26 14 9.8457 3.2875 -5.2412 27 1 9.3651 3.9619 -6.4738 28 1 10.0260 4.2937 -4.1640 29 1 11.1431 2.6197 -5.5169 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5399 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 2.3294 1.2303 2.1365 34 1 3.7143 0.6175 1.2012 35 1 4.1595 2.9497 0.4025 36 1 2.8330 3.5294 1.4383 37 1 4.2815 2.7998 2.1719 38 1 3.5843 0.5062 -1.2998 39 1 3.5604 2.2833 -1.2014 40 1 3.5889 1.3205 -3.7956 41 1 1.3133 2.4317 -4.9658 42 1 1.0014 0.6850 -4.8243 43 1 1.6549 2.2675 -7.7783 44 1 0.7781 0.7990 -7.2360 45 1 3.1731 1.0309 -9.0613 46 1 1.8949 -0.2212 -9.0267 47 1 4.5151 -0.2905 -7.7594 48 1 3.2575 -1.5567 -7.7555 49 1 4.7825 -1.3003 -5.4022 50 1 4.0898 -0.1237 -4.2602 51 1 6.6666 0.3642 -4.2391 52 1 9.6257 1.4191 -3.1116 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266476850.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:18 Heat of formation + Delta-G solvation = -72.105781 kcal Electronic energy + Delta-G solvation = -30924.725276 eV Core-core repulsion = 26923.666416 eV Total energy + Delta-G solvation = -4001.058859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.56172 -40.60230 -38.81985 -37.62140 -35.96284 -35.52987 -33.52845 -33.09587 -32.96043 -31.60476 -30.03559 -28.26304 -26.70865 -26.05411 -25.04534 -22.28761 -21.96248 -21.83951 -21.25294 -20.85630 -20.37257 -19.79450 -18.41628 -17.71891 -17.21196 -16.93714 -16.59897 -16.47425 -16.15469 -15.88988 -15.56772 -15.52472 -15.39478 -15.14442 -14.68938 -14.52366 -14.40157 -13.87687 -13.74675 -13.61421 -13.35791 -13.22195 -13.02500 -12.84733 -12.73727 -12.54158 -12.45094 -12.40338 -12.20444 -12.12991 -12.09953 -11.97367 -11.87777 -11.64204 -11.54968 -11.33560 -11.16775 -10.90319 -10.80160 -10.12047 -9.97140 -9.92315 -9.14368 -8.46637 -5.95048 1.33814 1.42253 1.53622 1.53795 1.73373 1.97154 2.26316 2.28365 2.98836 3.19348 3.20181 3.71068 3.80054 3.82197 3.83781 3.92881 4.08028 4.25336 4.35570 4.37861 4.41839 4.44260 4.46679 4.49800 4.55613 4.58026 4.62929 4.65514 4.73755 4.79330 4.81849 4.97734 4.99255 5.05618 5.09081 5.13817 5.16510 5.20885 5.27004 5.36881 5.41329 5.41987 5.48273 5.52355 5.84139 5.88459 5.90505 6.04556 6.06309 6.51319 6.56926 7.11368 7.27273 7.53031 8.06695 8.68644 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007503 B = 0.004375 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3730.985371 B = 6398.304075 C = 9413.177774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.157 4.157 3 C -0.038 4.038 4 H 0.065 0.935 5 C -0.110 4.110 6 C -0.158 4.158 7 C -0.138 4.138 8 C 0.509 3.491 9 O -0.566 6.566 10 N -0.729 5.729 11 C 0.143 3.857 12 C 0.033 3.967 13 H 0.072 0.928 14 C -0.104 4.104 15 C -0.115 4.115 16 C 0.032 3.968 17 N -0.481 5.481 18 C 0.031 3.969 19 C 0.406 3.594 20 O -0.611 6.611 21 N -0.563 5.563 22 C -0.330 4.330 23 H 0.078 0.922 24 C -0.005 4.005 25 N -0.912 5.912 26 Si 0.984 3.016 27 H -0.276 1.276 28 H -0.272 1.272 29 H -0.274 1.274 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.400 0.600 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.052 0.948 46 H 0.089 0.911 47 H 0.037 0.963 48 H 0.085 0.915 49 H 0.108 0.892 50 H 0.105 0.895 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.217 -3.203 5.497 12.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.175 4.175 3 C -0.057 4.057 4 H 0.084 0.916 5 C -0.147 4.147 6 C -0.216 4.216 7 C -0.177 4.177 8 C 0.297 3.703 9 O -0.446 6.446 10 N -0.383 5.383 11 C 0.019 3.981 12 C -0.076 4.076 13 H 0.089 0.911 14 C -0.143 4.143 15 C -0.153 4.153 16 C -0.096 4.096 17 N -0.204 5.204 18 C -0.101 4.101 19 C 0.193 3.807 20 O -0.499 6.499 21 N -0.199 5.199 22 C -0.459 4.459 23 H 0.096 0.904 24 C -0.206 4.206 25 N -0.553 5.553 26 Si 0.808 3.192 27 H -0.201 1.201 28 H -0.197 1.197 29 H -0.199 1.199 30 H 0.103 0.897 31 H 0.119 0.881 32 H 0.132 0.868 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.237 0.763 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.105 0.895 45 H 0.071 0.929 46 H 0.108 0.892 47 H 0.055 0.945 48 H 0.103 0.897 49 H 0.126 0.874 50 H 0.123 0.877 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.428 -3.079 5.272 13.847 hybrid contribution 2.131 0.907 -0.366 2.345 sum -10.297 -2.173 4.906 11.611 Atomic orbital electron populations 1.23769 0.96233 1.01330 1.00097 1.22897 0.96076 0.97934 1.00580 1.20085 0.96242 0.96119 0.93282 0.91641 1.21499 0.98707 0.98104 0.96439 1.21875 1.00707 0.96856 1.02114 1.21867 0.98594 1.05761 0.91513 1.21124 0.89020 0.74958 0.85164 1.90647 1.16157 1.50584 1.87176 1.46471 1.11024 1.74756 1.06067 1.21238 0.93019 1.01081 0.82794 1.23357 0.97647 0.91555 0.95031 0.91053 1.22342 0.98469 1.00529 0.92945 1.22208 0.97761 0.97817 0.97531 1.22877 0.99087 0.99954 0.87653 1.65175 1.24132 1.22413 1.08669 1.22409 0.89346 0.98833 0.99557 1.21766 0.84694 0.88228 0.85982 1.90466 1.78335 1.51965 1.29152 1.42088 1.16916 1.34763 1.26154 1.19626 0.99279 1.16002 1.11034 0.90393 1.25892 0.99421 0.99724 0.95522 1.69651 1.28109 1.40711 1.16785 0.85001 0.77913 0.78063 0.78186 1.20061 1.19724 1.19942 0.89731 0.88114 0.86808 0.91043 0.90954 0.92854 0.92839 0.91775 0.87500 0.87727 0.76267 0.91933 0.90967 0.90797 0.89475 0.92940 0.89242 0.94453 0.89704 0.87409 0.87710 0.76972 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.13 13.40 67.78 0.91 -3.22 16 2 C -0.16 -3.51 7.88 25.65 0.20 -3.31 16 3 C -0.04 -0.84 1.80 -11.54 -0.02 -0.86 16 4 H 0.07 1.65 7.49 -2.39 -0.02 1.63 16 5 C -0.11 -1.97 5.38 30.59 0.16 -1.80 16 6 C -0.16 -2.83 9.77 71.98 0.70 -2.13 16 7 C -0.14 -3.21 5.04 29.85 0.15 -3.06 16 8 C 0.51 14.87 7.51 87.66 0.66 15.53 16 9 O -0.57 -19.36 14.41 -3.03 -0.04 -19.41 16 10 N -0.73 -21.39 4.67 -463.06 -2.16 -23.55 16 11 C 0.14 4.20 5.41 86.38 0.47 4.66 16 12 C 0.03 1.01 2.18 45.26 0.10 1.11 16 13 H 0.07 2.80 5.06 -2.38 -0.01 2.79 16 14 C -0.10 -2.72 6.50 31.80 0.21 -2.52 16 15 C -0.12 -3.08 6.93 31.47 0.22 -2.86 16 16 C 0.03 0.98 6.01 86.45 0.52 1.50 16 17 N -0.48 -14.77 5.23 -862.78 -4.51 -19.28 16 18 C 0.03 1.00 5.33 85.56 0.46 1.46 16 19 C 0.41 17.06 6.36 87.66 0.56 17.62 16 20 O -0.61 -29.33 11.36 -3.07 -0.03 -29.36 16 21 N -0.56 -25.94 5.29 -306.99 -1.62 -27.56 16 22 C -0.33 -17.26 9.68 84.04 0.81 -16.45 16 23 H 0.08 4.42 7.16 -2.91 -0.02 4.40 16 24 C 0.00 -0.23 5.50 84.93 0.47 0.23 16 25 N -0.91 -45.81 13.05 21.66 0.28 -45.53 16 26 Si 0.98 40.78 29.55 68.60 2.03 42.81 16 27 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 28 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 29 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 30 H 0.08 2.13 7.83 -2.91 -0.02 2.11 16 31 H 0.10 2.05 8.06 -2.91 -0.02 2.03 16 32 H 0.11 2.27 8.06 -2.91 -0.02 2.25 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.05 1.02 6.31 -2.39 -0.02 1.01 16 36 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.10 2.34 6.27 -2.39 -0.01 2.32 16 40 H 0.40 12.05 5.54 -92.71 -0.51 11.54 16 41 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.07 2.16 8.10 -2.39 -0.02 2.14 16 43 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 44 H 0.09 1.96 8.05 -2.38 -0.02 1.95 16 45 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.04 1.40 5.77 -2.39 -0.01 1.38 16 48 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 49 H 0.11 3.15 8.14 -2.39 -0.02 3.14 16 50 H 0.11 3.04 5.29 -2.39 -0.01 3.03 16 51 H 0.40 17.40 7.90 -92.70 -0.73 16.66 16 52 H 0.28 13.14 8.31 -92.71 -0.77 12.37 16 Total: -1.00 -61.13 404.30 0.18 -60.95 By element: Atomic # 1 Polarization: 55.36 SS G_CDS: -0.32 Total: 55.03 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 6.57 Total: 5.90 kcal Atomic # 7 Polarization: -107.90 SS G_CDS: -8.01 Total: -115.92 kcal Atomic # 8 Polarization: -48.69 SS G_CDS: -0.08 Total: -48.77 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -61.13 0.18 -60.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266476850.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.158 kcal (2) G-P(sol) polarization free energy of solvation -61.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds