Wall clock time and date at job start Tue Mar 31 2020 20:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50704 * 119.99898 * 2 1 4 4 H 1.08996 * 109.47185 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.47046 * 239.99588 * 3 2 1 6 6 C 1.53004 * 109.47103 * 65.00222 * 5 3 2 7 7 C 1.53005 * 109.47310 * 119.99759 * 3 2 1 8 8 C 1.50698 * 109.46885 * 185.00145 * 7 3 2 9 9 O 1.21283 * 120.00211 * 359.97438 * 8 7 3 10 10 N 1.34784 * 119.99775 * 180.02562 * 8 7 3 11 11 C 1.46491 * 120.00096 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47360 * 186.88795 * 11 10 8 13 13 H 1.09004 * 110.72463 * 302.76529 * 12 11 10 14 14 C 1.54938 * 110.66923 * 179.67341 * 12 11 10 15 15 C 1.54596 * 102.92055 * 204.14775 * 14 12 11 16 16 C 1.53992 * 105.14147 * 21.95583 * 15 14 12 17 17 N 1.47906 * 107.05621 * 1.22451 * 16 15 14 18 18 C 1.46897 * 110.99856 * 214.15071 * 17 16 15 19 19 C 1.50698 * 109.46826 * 63.68444 * 18 17 16 20 20 O 1.21289 * 120.00450 * 352.96755 * 19 18 17 21 21 N 1.34784 * 119.99936 * 172.96837 * 19 18 17 22 22 C 1.37102 * 119.99782 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99847 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99752 * 179.72394 * 22 21 19 25 25 N 1.31404 * 119.99930 * 180.27381 * 24 22 21 26 26 Si 1.86803 * 119.99892 * 0.27596 * 24 22 21 27 27 H 1.48501 * 109.47166 * 89.99916 * 26 24 22 28 28 H 1.48504 * 109.46934 * 209.99969 * 26 24 22 29 29 H 1.48497 * 109.47285 * 330.00014 * 26 24 22 30 30 H 1.08001 * 120.00147 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99905 * 179.97438 * 1 2 3 32 32 H 1.08007 * 120.00435 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.46990 * 184.99421 * 5 3 2 34 34 H 1.08991 * 109.47595 * 305.00085 * 5 3 2 35 35 H 1.09005 * 109.47029 * 299.99617 * 6 5 3 36 36 H 1.08996 * 109.47442 * 59.99448 * 6 5 3 37 37 H 1.08996 * 109.47093 * 180.02562 * 6 5 3 38 38 H 1.09000 * 109.46518 * 65.00159 * 7 3 2 39 39 H 1.08996 * 109.47096 * 305.00009 * 7 3 2 40 40 H 0.97001 * 119.99816 * 359.97438 * 10 8 7 41 41 H 1.09011 * 109.47031 * 66.88677 * 11 10 8 42 42 H 1.09006 * 109.47323 * 306.89036 * 11 10 8 43 43 H 1.09008 * 110.72275 * 85.79020 * 14 12 11 44 44 H 1.08995 * 110.87695 * 322.58158 * 14 12 11 45 45 H 1.09003 * 110.30967 * 263.04168 * 15 14 12 46 46 H 1.08999 * 110.30568 * 140.87177 * 15 14 12 47 47 H 1.08992 * 109.92292 * 241.87292 * 16 15 14 48 48 H 1.09005 * 110.07896 * 120.66329 * 16 15 14 49 49 H 1.08993 * 109.47407 * 303.68322 * 18 17 16 50 50 H 1.09007 * 109.47231 * 183.67806 * 18 17 16 51 51 H 0.96999 * 119.99644 * 359.97438 * 21 19 18 52 52 H 0.97000 * 119.99893 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3861 -1.2492 6 6 2.0565 1.4307 -2.4954 7 6 2.9430 1.3863 1.2493 8 6 3.6018 2.7402 1.3127 9 8 3.3891 3.5594 0.4440 10 7 4.4282 3.0403 2.3343 11 6 5.0690 4.3562 2.3957 12 6 6.0784 4.3788 3.5452 13 1 5.5924 4.1354 4.4901 14 6 6.7795 5.7579 3.6303 15 6 8.1108 5.4254 4.3425 16 6 8.3299 3.9201 4.1033 17 7 7.2001 3.4432 3.2764 18 6 6.8332 2.0656 3.6307 19 6 6.3414 2.0272 5.0547 20 8 6.4195 3.0178 5.7502 21 7 5.8149 0.8920 5.5554 22 6 5.3680 0.8570 6.8511 23 1 5.4383 1.7389 7.4706 24 6 4.8198 -0.3116 7.3655 25 7 4.3866 -0.3437 8.6057 26 14 4.6990 -1.8371 6.2941 27 1 5.9355 -2.6458 6.4430 28 1 3.5256 -2.6449 6.7137 29 1 4.5396 -1.4333 4.8741 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 3.5539 2.2879 -1.2056 34 1 3.5906 0.5106 -1.2951 35 1 1.4456 0.5290 -2.5390 36 1 1.4090 2.3063 -2.4495 37 1 2.6832 1.4879 -3.3853 38 1 3.7084 0.6114 1.2056 39 1 2.3278 1.2397 2.1370 40 1 4.5985 2.3850 3.0289 41 1 4.3112 5.1220 2.5624 42 1 5.5844 4.5536 1.4557 43 1 6.1882 6.4553 4.2238 44 1 6.9648 6.1615 2.6349 45 1 8.0305 5.6311 5.4099 46 1 8.9272 6.0007 3.9059 47 1 8.3423 3.3906 5.0559 48 1 9.2702 3.7579 3.5762 49 1 7.7055 1.4199 3.5300 50 1 6.0441 1.7169 2.9643 51 1 5.7521 0.0999 4.9990 52 1 4.0036 -1.1594 8.9647 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266476851.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:22 Heat of formation + Delta-G solvation = -47.609538 kcal Electronic energy + Delta-G solvation = -30848.093180 eV Core-core repulsion = 26848.096558 eV Total energy + Delta-G solvation = -3999.996623 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.33994 -39.48561 -37.46987 -36.76604 -34.50585 -34.11867 -32.17819 -31.87974 -31.69086 -30.92235 -29.36899 -26.92387 -25.52327 -24.30279 -23.54117 -21.88964 -21.00117 -20.53790 -19.98346 -19.71121 -19.47062 -18.34543 -17.03807 -16.50346 -15.85446 -15.72413 -15.33982 -15.10960 -14.88864 -14.84367 -14.66061 -14.34820 -14.15677 -13.90848 -13.49897 -13.34765 -13.10134 -12.90008 -12.74971 -12.60932 -12.29304 -12.05568 -11.96978 -11.75743 -11.36061 -11.32405 -11.27396 -11.21500 -11.05673 -10.93053 -10.80537 -10.79305 -10.73301 -10.63000 -10.30618 -10.15324 -9.64756 -9.58923 -9.42463 -9.39569 -8.85343 -8.33993 -7.74131 -6.48064 -4.00067 2.15185 2.75361 2.88194 2.94767 3.04572 3.32612 3.45771 3.95017 4.19054 4.46642 4.60673 4.64759 4.88718 4.94713 4.97198 5.02501 5.09630 5.13963 5.23151 5.23559 5.36450 5.43408 5.46846 5.56879 5.63178 5.65921 5.71431 5.72495 5.74725 5.77141 5.84646 5.90119 5.91952 5.93709 6.02512 6.08008 6.23630 6.24825 6.28415 6.32138 6.46756 6.51400 6.54973 6.62643 6.68406 7.10092 7.18368 7.38127 7.59445 7.95988 8.32925 8.38342 8.76086 9.23112 9.58608 10.64276 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007466 B = 0.004501 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3749.192058 B = 6219.417434 C = 9298.718959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C -0.044 4.044 4 H 0.082 0.918 5 C -0.122 4.122 6 C -0.147 4.147 7 C -0.140 4.140 8 C 0.513 3.487 9 O -0.543 6.543 10 N -0.727 5.727 11 C 0.135 3.865 12 C 0.028 3.972 13 H 0.108 0.892 14 C -0.107 4.107 15 C -0.119 4.119 16 C 0.034 3.966 17 N -0.489 5.489 18 C 0.019 3.981 19 C 0.406 3.594 20 O -0.569 6.569 21 N -0.579 5.579 22 C -0.311 4.311 23 H 0.120 0.880 24 C 0.046 3.954 25 N -0.873 5.873 26 Si 0.878 3.122 27 H -0.269 1.269 28 H -0.275 1.275 29 H -0.268 1.268 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.401 0.599 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.062 0.938 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.094 0.906 50 H 0.088 0.912 51 H 0.371 0.629 52 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.539 1.887 -16.542 16.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.163 4.163 3 C -0.062 4.062 4 H 0.100 0.900 5 C -0.159 4.159 6 C -0.204 4.204 7 C -0.180 4.180 8 C 0.299 3.701 9 O -0.421 6.421 10 N -0.381 5.381 11 C 0.011 3.989 12 C -0.080 4.080 13 H 0.125 0.875 14 C -0.146 4.146 15 C -0.157 4.157 16 C -0.094 4.094 17 N -0.211 5.211 18 C -0.114 4.114 19 C 0.192 3.808 20 O -0.454 6.454 21 N -0.217 5.217 22 C -0.439 4.439 23 H 0.138 0.862 24 C -0.159 4.159 25 N -0.512 5.512 26 Si 0.704 3.296 27 H -0.195 1.195 28 H -0.200 1.200 29 H -0.194 1.194 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.126 0.874 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.239 0.761 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.084 0.916 49 H 0.112 0.888 50 H 0.106 0.894 51 H 0.204 0.796 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.591 3.007 -17.058 17.331 hybrid contribution -0.308 -1.933 0.699 2.079 sum -0.899 1.074 -16.359 16.419 Atomic orbital electron populations 1.23842 0.95946 1.01741 1.01481 1.22949 0.95958 0.98088 0.99265 1.20137 0.96838 0.95625 0.93642 0.90015 1.21659 0.98051 1.02899 0.93297 1.21724 0.99756 1.01503 0.97431 1.21749 1.00444 0.95260 1.00565 1.20631 0.78666 0.89516 0.81241 1.90642 1.62358 1.50605 1.38504 1.46427 1.47276 1.17693 1.26752 1.21361 0.94231 0.84036 0.99259 1.23506 0.92470 0.92963 0.99052 0.87457 1.22298 0.96172 0.95625 1.00484 1.22217 0.96928 0.95723 1.00811 1.22850 0.93555 0.95515 0.97471 1.65105 1.05498 1.00260 1.50285 1.22426 1.01961 0.93235 0.93777 1.20911 0.85156 0.84624 0.90114 1.90504 1.60180 1.33864 1.60822 1.42446 1.54819 1.11151 1.13303 1.19448 1.36976 1.00848 0.86665 0.86211 1.25080 0.96821 0.97972 0.96004 1.69614 1.39228 1.28694 1.13649 0.86704 0.79150 0.83554 0.80203 1.19468 1.19986 1.19364 0.88627 0.88598 0.87391 0.89692 0.92622 0.93030 0.92876 0.93167 0.88779 0.88614 0.76118 0.91705 0.90774 0.91238 0.91329 0.91283 0.91948 0.91086 0.91636 0.88827 0.89405 0.79637 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.79 14.32 29.02 0.42 -1.37 16 2 C -0.14 -1.41 7.75 -36.02 -0.28 -1.69 16 3 C -0.04 -0.48 1.80 -91.77 -0.17 -0.64 16 4 H 0.08 1.00 7.60 -51.93 -0.39 0.61 16 5 C -0.12 -1.34 5.18 -26.73 -0.14 -1.47 16 6 C -0.15 -1.45 9.73 37.16 0.36 -1.09 16 7 C -0.14 -1.60 5.16 -27.88 -0.14 -1.74 16 8 C 0.51 7.19 7.51 -10.98 -0.08 7.10 16 9 O -0.54 -8.92 13.96 5.55 0.08 -8.84 16 10 N -0.73 -10.24 4.68 -60.29 -0.28 -10.52 16 11 C 0.14 1.93 5.41 -4.05 -0.02 1.91 16 12 C 0.03 0.43 2.18 -65.79 -0.14 0.28 16 13 H 0.11 2.01 5.05 -51.93 -0.26 1.75 16 14 C -0.11 -1.42 6.50 -24.87 -0.16 -1.58 16 15 C -0.12 -1.61 6.93 -25.38 -0.18 -1.79 16 16 C 0.03 0.51 6.01 -2.75 -0.02 0.49 16 17 N -0.49 -7.36 5.23 -224.07 -1.17 -8.53 16 18 C 0.02 0.29 5.32 -4.98 -0.03 0.26 16 19 C 0.41 8.06 6.34 -10.98 -0.07 7.99 16 20 O -0.57 -13.09 11.37 5.55 0.06 -13.03 16 21 N -0.58 -12.35 5.09 -10.96 -0.06 -12.40 16 22 C -0.31 -8.10 10.16 -14.93 -0.15 -8.25 16 23 H 0.12 3.62 7.39 -52.49 -0.39 3.23 16 24 C 0.05 1.17 5.50 -17.47 -0.10 1.07 16 25 N -0.87 -24.19 13.96 55.50 0.77 -23.42 16 26 Si 0.88 18.03 27.74 -169.99 -4.72 13.31 16 27 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 28 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 29 H -0.27 -4.86 6.51 56.52 0.37 -4.50 16 30 H 0.10 0.87 7.83 -52.49 -0.41 0.46 16 31 H 0.10 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.11 0.96 8.06 -52.48 -0.42 0.54 16 33 H 0.08 1.12 5.88 -51.93 -0.31 0.81 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.47 7.38 -51.93 -0.38 0.09 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.40 5.72 5.48 -40.82 -0.22 5.49 16 41 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 42 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 43 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 44 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 45 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.07 1.27 5.79 -51.93 -0.30 0.97 16 48 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 49 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 50 H 0.09 1.20 5.30 -51.93 -0.28 0.93 16 51 H 0.37 6.93 5.76 -40.82 -0.24 6.70 16 52 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 402.15 15.07 6.06 6.06 Total: -1.00 -29.65 402.15 -8.83 -38.47 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: -8.68 Total: 19.41 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -0.90 Total: -0.51 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.74 Total: -54.87 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: 0.14 Total: -21.87 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -4.72 Total: 13.31 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.65 -8.83 -38.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266476851.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.135 kcal (2) G-P(sol) polarization free energy of solvation -29.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds