Wall clock time and date at job start Tue Mar 31 2020 20:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50704 * 119.99898 * 2 1 4 4 H 1.08996 * 109.47185 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.47046 * 239.99588 * 3 2 1 6 6 C 1.53004 * 109.47103 * 65.00222 * 5 3 2 7 7 C 1.53005 * 109.47310 * 119.99759 * 3 2 1 8 8 C 1.50698 * 109.46885 * 185.00145 * 7 3 2 9 9 O 1.21283 * 120.00211 * 359.97438 * 8 7 3 10 10 N 1.34784 * 119.99775 * 180.02562 * 8 7 3 11 11 C 1.46491 * 120.00096 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47360 * 186.88795 * 11 10 8 13 13 H 1.09004 * 110.72463 * 302.76529 * 12 11 10 14 14 C 1.54938 * 110.66923 * 179.67341 * 12 11 10 15 15 C 1.54596 * 102.92055 * 204.14775 * 14 12 11 16 16 C 1.53992 * 105.14147 * 21.95583 * 15 14 12 17 17 N 1.47906 * 107.05621 * 1.22451 * 16 15 14 18 18 C 1.46897 * 110.99856 * 214.15071 * 17 16 15 19 19 C 1.50698 * 109.46826 * 63.68444 * 18 17 16 20 20 O 1.21289 * 120.00450 * 352.96755 * 19 18 17 21 21 N 1.34784 * 119.99936 * 172.96837 * 19 18 17 22 22 C 1.37102 * 119.99782 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99847 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99752 * 179.72394 * 22 21 19 25 25 N 1.31404 * 119.99930 * 180.27381 * 24 22 21 26 26 Si 1.86803 * 119.99892 * 0.27596 * 24 22 21 27 27 H 1.48501 * 109.47166 * 89.99916 * 26 24 22 28 28 H 1.48504 * 109.46934 * 209.99969 * 26 24 22 29 29 H 1.48497 * 109.47285 * 330.00014 * 26 24 22 30 30 H 1.08001 * 120.00147 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99905 * 179.97438 * 1 2 3 32 32 H 1.08007 * 120.00435 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.46990 * 184.99421 * 5 3 2 34 34 H 1.08991 * 109.47595 * 305.00085 * 5 3 2 35 35 H 1.09005 * 109.47029 * 299.99617 * 6 5 3 36 36 H 1.08996 * 109.47442 * 59.99448 * 6 5 3 37 37 H 1.08996 * 109.47093 * 180.02562 * 6 5 3 38 38 H 1.09000 * 109.46518 * 65.00159 * 7 3 2 39 39 H 1.08996 * 109.47096 * 305.00009 * 7 3 2 40 40 H 0.97001 * 119.99816 * 359.97438 * 10 8 7 41 41 H 1.09011 * 109.47031 * 66.88677 * 11 10 8 42 42 H 1.09006 * 109.47323 * 306.89036 * 11 10 8 43 43 H 1.09008 * 110.72275 * 85.79020 * 14 12 11 44 44 H 1.08995 * 110.87695 * 322.58158 * 14 12 11 45 45 H 1.09003 * 110.30967 * 263.04168 * 15 14 12 46 46 H 1.08999 * 110.30568 * 140.87177 * 15 14 12 47 47 H 1.08992 * 109.92292 * 241.87292 * 16 15 14 48 48 H 1.09005 * 110.07896 * 120.66329 * 16 15 14 49 49 H 1.08993 * 109.47407 * 303.68322 * 18 17 16 50 50 H 1.09007 * 109.47231 * 183.67806 * 18 17 16 51 51 H 0.96999 * 119.99644 * 359.97438 * 21 19 18 52 52 H 0.97000 * 119.99893 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3861 -1.2492 6 6 2.0565 1.4307 -2.4954 7 6 2.9430 1.3863 1.2493 8 6 3.6018 2.7402 1.3127 9 8 3.3891 3.5594 0.4440 10 7 4.4282 3.0403 2.3343 11 6 5.0690 4.3562 2.3957 12 6 6.0784 4.3788 3.5452 13 1 5.5924 4.1354 4.4901 14 6 6.7795 5.7579 3.6303 15 6 8.1108 5.4254 4.3425 16 6 8.3299 3.9201 4.1033 17 7 7.2001 3.4432 3.2764 18 6 6.8332 2.0656 3.6307 19 6 6.3414 2.0272 5.0547 20 8 6.4195 3.0178 5.7502 21 7 5.8149 0.8920 5.5554 22 6 5.3680 0.8570 6.8511 23 1 5.4383 1.7389 7.4706 24 6 4.8198 -0.3116 7.3655 25 7 4.3866 -0.3437 8.6057 26 14 4.6990 -1.8371 6.2941 27 1 5.9355 -2.6458 6.4430 28 1 3.5256 -2.6449 6.7137 29 1 4.5396 -1.4333 4.8741 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 3.5539 2.2879 -1.2056 34 1 3.5906 0.5106 -1.2951 35 1 1.4456 0.5290 -2.5390 36 1 1.4090 2.3063 -2.4495 37 1 2.6832 1.4879 -3.3853 38 1 3.7084 0.6114 1.2056 39 1 2.3278 1.2397 2.1370 40 1 4.5985 2.3850 3.0289 41 1 4.3112 5.1220 2.5624 42 1 5.5844 4.5536 1.4557 43 1 6.1882 6.4553 4.2238 44 1 6.9648 6.1615 2.6349 45 1 8.0305 5.6311 5.4099 46 1 8.9272 6.0007 3.9059 47 1 8.3423 3.3906 5.0559 48 1 9.2702 3.7579 3.5762 49 1 7.7055 1.4199 3.5300 50 1 6.0441 1.7169 2.9643 51 1 5.7521 0.0999 4.9990 52 1 4.0036 -1.1594 8.9647 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266476851.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:21 Heat of formation + Delta-G solvation = -68.320764 kcal Electronic energy + Delta-G solvation = -30848.991286 eV Core-core repulsion = 26848.096558 eV Total energy + Delta-G solvation = -4000.894729 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.65088 -40.70348 -38.92491 -37.66713 -36.02037 -35.57957 -33.85688 -33.18990 -32.62836 -31.91782 -30.41846 -28.42295 -26.63135 -25.81070 -24.64594 -22.71695 -22.14435 -21.87138 -21.31093 -20.98822 -20.49004 -20.02479 -18.30766 -17.71281 -17.18673 -17.02278 -16.73006 -16.34704 -16.21049 -15.83166 -15.72478 -15.55395 -15.33570 -15.12220 -14.82085 -14.56574 -14.35533 -14.28254 -14.03528 -13.59789 -13.45852 -13.39545 -13.07836 -12.85731 -12.77609 -12.54256 -12.40491 -12.24533 -12.12294 -12.06939 -12.02953 -11.99909 -11.93635 -11.63638 -11.62551 -11.50094 -11.20492 -10.97122 -10.69201 -10.20980 -10.18403 -10.01501 -9.18748 -8.42310 -6.02887 1.29540 1.35072 1.43230 1.44532 1.66670 1.85790 2.22408 2.25055 2.88552 2.95578 3.14599 3.65044 3.75964 3.78616 3.82956 4.00934 4.11777 4.13471 4.24998 4.31463 4.37108 4.41576 4.44243 4.45951 4.53322 4.56195 4.62057 4.65093 4.74823 4.79803 4.86582 4.96118 4.97628 5.07275 5.08403 5.12235 5.13166 5.21924 5.25805 5.39452 5.41649 5.47424 5.51308 5.51963 5.79258 5.86058 5.86777 5.96232 5.99949 6.47639 6.54829 6.85985 7.22869 7.35907 7.89506 8.74664 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007466 B = 0.004501 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3749.192058 B = 6219.417434 C = 9298.718959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.149 4.149 3 C -0.041 4.041 4 H 0.061 0.939 5 C -0.119 4.119 6 C -0.144 4.144 7 C -0.138 4.138 8 C 0.511 3.489 9 O -0.569 6.569 10 N -0.728 5.728 11 C 0.142 3.858 12 C 0.031 3.969 13 H 0.069 0.931 14 C -0.105 4.105 15 C -0.117 4.117 16 C 0.032 3.968 17 N -0.479 5.479 18 C 0.027 3.973 19 C 0.416 3.584 20 O -0.601 6.601 21 N -0.583 5.583 22 C -0.325 4.325 23 H 0.057 0.943 24 C -0.011 4.011 25 N -0.932 5.932 26 Si 0.955 3.045 27 H -0.261 1.261 28 H -0.278 1.278 29 H -0.221 1.221 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.124 0.876 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.042 0.958 37 H 0.056 0.944 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.401 0.599 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.048 0.952 46 H 0.090 0.910 47 H 0.036 0.964 48 H 0.090 0.910 49 H 0.121 0.879 50 H 0.113 0.887 51 H 0.389 0.611 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.095 0.007 -20.011 20.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.167 4.167 3 C -0.059 4.059 4 H 0.080 0.920 5 C -0.157 4.157 6 C -0.202 4.202 7 C -0.178 4.178 8 C 0.299 3.701 9 O -0.449 6.449 10 N -0.382 5.382 11 C 0.018 3.982 12 C -0.078 4.078 13 H 0.087 0.913 14 C -0.143 4.143 15 C -0.155 4.155 16 C -0.096 4.096 17 N -0.201 5.201 18 C -0.106 4.106 19 C 0.203 3.797 20 O -0.487 6.487 21 N -0.224 5.224 22 C -0.454 4.454 23 H 0.075 0.925 24 C -0.210 4.210 25 N -0.572 5.572 26 Si 0.775 3.225 27 H -0.186 1.186 28 H -0.204 1.204 29 H -0.144 1.144 30 H 0.109 0.891 31 H 0.128 0.872 32 H 0.141 0.859 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.136 0.864 39 H 0.119 0.881 40 H 0.238 0.762 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.067 0.933 46 H 0.109 0.891 47 H 0.055 0.945 48 H 0.108 0.892 49 H 0.139 0.861 50 H 0.131 0.869 51 H 0.224 0.776 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.058 1.153 -20.553 20.585 hybrid contribution -0.467 -1.141 1.818 2.197 sum -0.409 0.011 -18.735 18.739 Atomic orbital electron populations 1.23989 0.96029 1.02260 1.00745 1.22952 0.96043 0.97798 0.99893 1.20073 0.96500 0.95842 0.93534 0.92006 1.21607 0.98073 1.02252 0.93721 1.21699 0.99671 1.01464 0.97323 1.21817 1.00985 0.94018 1.00950 1.21124 0.78148 0.90290 0.80503 1.90638 1.63132 1.51704 1.39445 1.46462 1.47414 1.17507 1.26787 1.21255 0.93893 0.84337 0.98717 1.23363 0.92650 0.94245 0.97504 0.91310 1.22340 0.95718 0.94638 1.01652 1.22222 0.98146 0.95267 0.99909 1.22891 0.94575 0.96015 0.96107 1.65183 1.05299 1.00098 1.49519 1.22567 1.03655 0.94122 0.90236 1.21946 0.82686 0.83384 0.91685 1.90521 1.60491 1.35203 1.62459 1.42227 1.55854 1.12474 1.11807 1.18971 1.38663 0.99334 0.88439 0.92530 1.26083 0.95624 1.01850 0.97491 1.69799 1.40937 1.30106 1.16382 0.85501 0.79072 0.77611 0.80284 1.18555 1.20363 1.14403 0.89131 0.87164 0.85862 0.92072 0.91274 0.92144 0.93869 0.92485 0.86431 0.88114 0.76181 0.92014 0.90461 0.91119 0.89197 0.93297 0.89121 0.94536 0.89185 0.86078 0.86923 0.77561 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.12 14.32 67.79 0.97 -2.15 16 2 C -0.15 -2.48 7.75 25.65 0.20 -2.28 16 3 C -0.04 -0.81 1.80 -11.54 -0.02 -0.83 16 4 H 0.06 1.47 7.60 -2.39 -0.02 1.46 16 5 C -0.12 -2.38 5.18 30.60 0.16 -2.22 16 6 C -0.14 -2.61 9.73 71.98 0.70 -1.91 16 7 C -0.14 -2.79 5.16 29.85 0.15 -2.64 16 8 C 0.51 13.50 7.51 87.66 0.66 14.16 16 9 O -0.57 -18.24 13.96 -3.04 -0.04 -18.28 16 10 N -0.73 -19.31 4.68 -463.06 -2.17 -21.48 16 11 C 0.14 3.88 5.41 86.38 0.47 4.35 16 12 C 0.03 0.91 2.18 45.26 0.10 1.01 16 13 H 0.07 2.64 5.05 -2.38 -0.01 2.63 16 14 C -0.10 -2.66 6.50 31.80 0.21 -2.45 16 15 C -0.12 -3.05 6.93 31.47 0.22 -2.84 16 16 C 0.03 0.91 6.01 86.44 0.52 1.43 16 17 N -0.48 -13.43 5.23 -862.81 -4.51 -17.94 16 18 C 0.03 0.75 5.32 85.56 0.46 1.21 16 19 C 0.42 16.43 6.34 87.66 0.56 16.98 16 20 O -0.60 -28.79 11.37 -3.06 -0.03 -28.82 16 21 N -0.58 -24.53 5.09 -306.97 -1.56 -26.09 16 22 C -0.32 -17.61 10.16 84.04 0.85 -16.75 16 23 H 0.06 3.71 7.39 -2.91 -0.02 3.69 16 24 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 25 N -0.93 -53.91 13.96 21.66 0.30 -53.60 16 26 Si 0.96 35.89 27.74 68.60 1.90 37.79 16 27 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 28 H -0.28 -10.61 7.11 99.48 0.71 -9.90 16 29 H -0.22 -6.57 6.51 99.48 0.65 -5.92 16 30 H 0.09 1.53 7.83 -2.91 -0.02 1.51 16 31 H 0.11 1.46 8.06 -2.91 -0.02 1.44 16 32 H 0.12 1.70 8.06 -2.91 -0.02 1.68 16 33 H 0.06 1.53 5.88 -2.39 -0.01 1.52 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 0.98 7.38 -2.38 -0.02 0.96 16 36 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.40 10.63 5.48 -92.71 -0.51 10.12 16 41 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.08 2.10 8.11 -2.38 -0.02 2.08 16 43 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 44 H 0.09 1.92 8.06 -2.39 -0.02 1.90 16 45 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.04 1.31 5.79 -2.39 -0.01 1.29 16 48 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 49 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 50 H 0.11 2.67 5.30 -2.38 -0.01 2.66 16 51 H 0.39 13.40 5.76 -92.71 -0.53 12.87 16 52 H 0.28 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -70.25 402.15 0.37 -69.88 By element: Atomic # 1 Polarization: 53.78 SS G_CDS: -0.18 Total: 53.60 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 6.66 Total: 4.95 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -7.94 Total: -119.12 kcal Atomic # 8 Polarization: -47.03 SS G_CDS: -0.08 Total: -47.10 kcal Atomic # 14 Polarization: 35.89 SS G_CDS: 1.90 Total: 37.79 kcal Total: -70.25 0.37 -69.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266476851.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.560 kcal (2) G-P(sol) polarization free energy of solvation -70.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds