Wall clock time and date at job start Tue Mar 31 2020 20:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50694 * 120.00238 * 2 1 4 4 H 1.09002 * 109.47293 * 359.97438 * 3 2 1 5 5 C 1.53001 * 109.47301 * 119.99754 * 3 2 1 6 6 C 1.53003 * 109.46965 * 295.00051 * 5 3 2 7 7 C 1.52997 * 109.47284 * 239.99691 * 3 2 1 8 8 C 1.50700 * 109.46928 * 64.99899 * 7 3 2 9 9 O 1.21281 * 120.00144 * 0.02562 * 8 7 3 10 10 N 1.34779 * 120.00292 * 179.97438 * 8 7 3 11 11 C 1.46499 * 120.00267 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47001 * 173.28328 * 11 10 8 13 13 H 1.08997 * 110.42285 * 60.30033 * 12 11 10 14 14 C 1.54902 * 110.37506 * 182.61683 * 12 11 10 15 15 C 1.55133 * 101.65520 * 155.90024 * 14 12 11 16 16 C 1.54315 * 103.01964 * 324.34544 * 15 14 12 17 17 N 1.47447 * 107.23424 * 22.28328 * 16 15 14 18 18 C 1.46898 * 110.99709 * 123.25566 * 17 16 15 19 19 C 1.50696 * 109.47069 * 75.64354 * 18 17 16 20 20 O 1.21288 * 120.00061 * 359.97438 * 19 18 17 21 21 N 1.34780 * 119.99540 * 179.97438 * 19 18 17 22 22 C 1.37109 * 119.99508 * 179.97438 * 21 19 18 23 23 H 1.07995 * 119.99855 * 359.97438 * 22 21 19 24 24 C 1.38946 * 119.99790 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00003 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99901 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.47536 * 60.00001 * 26 24 22 28 28 H 1.48506 * 109.47264 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47125 * 299.99807 * 26 24 22 30 30 H 1.08000 * 119.99770 * 179.97438 * 1 2 3 31 31 H 1.07994 * 119.99659 * 359.97438 * 1 2 3 32 32 H 1.08005 * 120.00039 * 179.97438 * 2 1 3 33 33 H 1.09001 * 109.47440 * 55.00097 * 5 3 2 34 34 H 1.09000 * 109.47139 * 175.00281 * 5 3 2 35 35 H 1.09002 * 109.47116 * 299.99711 * 6 5 3 36 36 H 1.09000 * 109.47005 * 60.00148 * 6 5 3 37 37 H 1.09000 * 109.46872 * 180.02562 * 6 5 3 38 38 H 1.08995 * 109.47402 * 305.00247 * 7 3 2 39 39 H 1.09005 * 109.47119 * 184.99390 * 7 3 2 40 40 H 0.97008 * 119.99343 * 359.97438 * 10 8 7 41 41 H 1.09003 * 109.46719 * 53.28764 * 11 10 8 42 42 H 1.08997 * 109.47420 * 293.28293 * 11 10 8 43 43 H 1.09002 * 110.99125 * 37.80629 * 14 12 11 44 44 H 1.09003 * 110.99072 * 273.99571 * 14 12 11 45 45 H 1.09000 * 110.70608 * 205.96468 * 15 14 12 46 46 H 1.08994 * 110.71082 * 82.73064 * 15 14 12 47 47 H 1.09002 * 109.88874 * 262.87990 * 16 15 14 48 48 H 1.09002 * 110.02461 * 141.76678 * 16 15 14 49 49 H 1.09002 * 109.47058 * 195.64199 * 18 17 16 50 50 H 1.09001 * 109.47496 * 315.63494 * 18 17 16 51 51 H 0.96995 * 120.00535 * 359.97438 * 21 19 18 52 52 H 0.97003 * 120.00259 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3553 2.1336 -0.0005 5 6 2.9431 1.3861 1.2493 6 6 2.0564 1.4307 2.4953 7 6 2.9432 1.3860 -1.2492 8 6 2.0699 1.4299 -2.4765 9 8 0.8628 1.3999 -2.3633 10 7 2.6302 1.5036 -3.7001 11 6 1.7813 1.5457 -4.8933 12 6 2.6493 1.7955 -6.1282 13 1 3.3809 0.9963 -6.2468 14 6 1.7649 1.9094 -7.3949 15 6 2.6704 2.7480 -8.3349 16 6 3.3767 3.7171 -7.3636 17 7 3.3290 3.1042 -6.0234 18 6 4.6795 2.9528 -5.4655 19 6 5.1831 4.2940 -4.9981 20 8 4.4859 5.2792 -5.1183 21 7 6.4084 4.3987 -4.4464 22 6 6.8668 5.6191 -4.0216 23 1 6.2463 6.4964 -4.1294 24 6 8.1301 5.7272 -3.4533 25 7 8.8853 4.6598 -3.3226 26 14 8.7544 7.3897 -2.8739 27 1 7.8443 7.9236 -1.8292 28 1 10.1194 7.2366 -2.3093 29 1 8.7959 8.3305 -4.0221 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5399 0.9353 0.0004 32 1 1.8501 -0.9354 0.0004 33 1 3.5906 0.5104 1.2953 34 1 3.5540 2.2878 1.2056 35 1 1.4090 2.3064 2.4494 36 1 1.4455 0.5290 2.5390 37 1 2.6830 1.4889 3.3853 38 1 3.5906 0.5104 -1.2951 39 1 3.5541 2.2878 -1.2055 40 1 3.5957 1.5288 -3.7906 41 1 1.0527 2.3501 -4.7925 42 1 1.2599 0.5947 -5.0020 43 1 0.8356 2.4354 -7.1763 44 1 1.5644 0.9262 -7.8208 45 1 2.0694 3.2982 -9.0589 46 1 3.3965 2.1111 -8.8398 47 1 2.8567 4.6750 -7.3520 48 1 4.4132 3.8617 -7.6686 49 1 4.6491 2.2623 -4.6226 50 1 5.3476 2.5608 -6.2323 51 1 6.9658 3.6109 -4.3498 52 1 9.7674 4.7353 -2.9262 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266476852.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:24 Heat of formation + Delta-G solvation = -58.556022 kcal Electronic energy + Delta-G solvation = -30189.411272 eV Core-core repulsion = 26188.939974 eV Total energy + Delta-G solvation = -4000.471298 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.02151 -39.14809 -37.65479 -36.71613 -34.42477 -33.93739 -32.03102 -31.75317 -31.15686 -30.90340 -29.45017 -26.82483 -25.60760 -24.38194 -23.63199 -21.66250 -21.40480 -20.36480 -20.06414 -19.46381 -19.13921 -17.89451 -17.00206 -16.36568 -15.98043 -15.63424 -15.48541 -15.17791 -14.70949 -14.56877 -14.51716 -14.07497 -13.98898 -13.83600 -13.74169 -13.38272 -13.11982 -12.86457 -12.53179 -12.22935 -12.19859 -12.15008 -11.75739 -11.68473 -11.44860 -11.42323 -11.22741 -11.19389 -11.17419 -11.03604 -10.97429 -10.81491 -10.57917 -10.48211 -10.45778 -10.23151 -9.71766 -9.50732 -9.07507 -8.82633 -8.50090 -7.98814 -7.93433 -6.43646 -3.84317 2.47772 2.89003 3.18361 3.24495 3.28827 3.32369 3.85868 3.90285 4.20402 4.56490 4.65156 4.73662 4.76656 4.86340 4.92051 5.08106 5.14976 5.19539 5.22668 5.24551 5.27041 5.33213 5.43849 5.49595 5.52169 5.56235 5.63823 5.71738 5.75515 5.77995 5.83015 5.87031 5.89216 5.92753 5.94022 6.01836 6.03311 6.17748 6.19794 6.25721 6.29843 6.41445 6.61312 6.76258 6.98398 7.18624 7.21112 7.53290 7.65960 8.04137 8.43681 8.60114 9.16837 9.52107 10.04640 10.74008 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.006886 B = 0.003957 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4065.216125 B = 7074.919640 C =10631.287919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.148 4.148 3 C -0.043 4.043 4 H 0.081 0.919 5 C -0.118 4.118 6 C -0.150 4.150 7 C -0.139 4.139 8 C 0.514 3.486 9 O -0.539 6.539 10 N -0.726 5.726 11 C 0.139 3.861 12 C 0.055 3.945 13 H 0.058 0.942 14 C -0.118 4.118 15 C -0.143 4.143 16 C 0.055 3.945 17 N -0.498 5.498 18 C 0.042 3.958 19 C 0.444 3.556 20 O -0.571 6.571 21 N -0.566 5.566 22 C -0.298 4.298 23 H 0.102 0.898 24 C 0.024 3.976 25 N -0.903 5.903 26 Si 0.929 3.071 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.274 1.274 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.397 0.603 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.082 0.918 48 H 0.054 0.946 49 H 0.077 0.923 50 H 0.052 0.948 51 H 0.390 0.610 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.282 -12.681 0.206 16.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C -0.062 4.062 4 H 0.099 0.901 5 C -0.156 4.156 6 C -0.207 4.207 7 C -0.179 4.179 8 C 0.301 3.699 9 O -0.416 6.416 10 N -0.381 5.381 11 C 0.015 3.985 12 C -0.054 4.054 13 H 0.076 0.924 14 C -0.156 4.156 15 C -0.182 4.182 16 C -0.072 4.072 17 N -0.222 5.222 18 C -0.090 4.090 19 C 0.228 3.772 20 O -0.453 6.453 21 N -0.204 5.204 22 C -0.427 4.427 23 H 0.119 0.881 24 C -0.178 4.178 25 N -0.544 5.544 26 Si 0.756 3.244 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.200 1.200 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.117 0.883 40 H 0.234 0.766 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.101 0.899 48 H 0.073 0.927 49 H 0.095 0.905 50 H 0.070 0.930 51 H 0.223 0.777 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.697 -11.713 0.631 16.566 hybrid contribution 1.903 -0.226 -0.309 1.941 sum -9.794 -11.939 0.322 15.446 Atomic orbital electron populations 1.23658 0.95923 1.01113 0.99762 1.22650 0.95956 0.97121 1.00828 1.20136 0.96570 0.96879 0.92600 0.90050 1.21557 0.97875 1.02285 0.93861 1.21753 0.99799 1.01950 0.97225 1.21745 0.98774 1.04699 0.92645 1.20620 0.89129 0.75599 0.84570 1.90673 1.14778 1.49453 1.86700 1.46212 1.10520 1.75403 1.05979 1.21293 0.93160 1.01270 0.82777 1.22866 0.96100 0.91608 0.94815 0.92384 1.22627 0.98689 1.00352 0.93946 1.22839 0.98819 0.98306 0.98190 1.22745 1.00228 0.98235 0.86022 1.63133 1.16810 1.19181 1.23109 1.22190 0.89942 0.97750 0.99162 1.19690 0.83221 0.89727 0.84526 1.90535 1.56853 1.38343 1.59596 1.41852 1.13925 1.10730 1.53880 1.19630 0.99571 0.87355 1.36191 0.88051 1.25220 0.96097 0.98933 0.97548 1.69595 1.11011 1.28731 1.45108 0.85950 0.77669 0.81672 0.79144 1.19889 1.20981 1.19954 0.89456 0.88657 0.88254 0.91865 0.91445 0.92814 0.92587 0.92957 0.89056 0.88270 0.76578 0.90491 0.91870 0.90157 0.90755 0.90673 0.91683 0.89931 0.92701 0.90509 0.92998 0.77655 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 13.22 29.01 0.38 -1.59 16 2 C -0.15 -1.69 6.76 -36.03 -0.24 -1.93 16 3 C -0.04 -0.50 1.82 -91.78 -0.17 -0.67 16 4 H 0.08 1.09 7.60 -51.93 -0.39 0.70 16 5 C -0.12 -1.20 5.39 -26.73 -0.14 -1.34 16 6 C -0.15 -1.42 9.73 37.16 0.36 -1.06 16 7 C -0.14 -1.66 5.16 -27.88 -0.14 -1.80 16 8 C 0.51 7.44 7.58 -10.98 -0.08 7.35 16 9 O -0.54 -9.18 14.14 5.56 0.08 -9.10 16 10 N -0.73 -9.75 5.37 -60.29 -0.32 -10.08 16 11 C 0.14 1.80 5.39 -4.04 -0.02 1.78 16 12 C 0.06 0.66 2.66 -66.19 -0.18 0.49 16 13 H 0.06 0.63 7.81 -51.93 -0.41 0.23 16 14 C -0.12 -1.19 6.49 -24.60 -0.16 -1.35 16 15 C -0.14 -1.54 6.94 -24.91 -0.17 -1.71 16 16 C 0.06 0.82 5.99 -2.84 -0.02 0.81 16 17 N -0.50 -7.80 4.34 -224.81 -0.98 -8.78 16 18 C 0.04 0.69 4.92 -4.98 -0.02 0.67 16 19 C 0.44 10.06 7.60 -10.99 -0.08 9.98 16 20 O -0.57 -15.18 15.42 5.55 0.09 -15.09 16 21 N -0.57 -13.77 5.29 -10.96 -0.06 -13.83 16 22 C -0.30 -8.10 9.68 -14.93 -0.14 -8.25 16 23 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 24 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -23.86 13.05 55.50 0.72 -23.14 16 26 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 30 H 0.09 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.10 1.21 7.83 -52.49 -0.41 0.80 16 32 H 0.10 1.02 8.06 -52.48 -0.42 0.60 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.52 7.38 -51.93 -0.38 0.14 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.40 4.99 5.39 -40.82 -0.22 4.77 16 41 H 0.08 1.17 8.11 -51.93 -0.42 0.74 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.83 8.06 -51.93 -0.42 0.42 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 48 H 0.05 0.87 7.36 -51.93 -0.38 0.49 16 49 H 0.08 1.11 4.97 -51.93 -0.26 0.86 16 50 H 0.05 0.79 7.78 -51.93 -0.40 0.38 16 51 H 0.39 9.01 7.90 -40.82 -0.32 8.69 16 52 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 414.67 15.07 6.25 6.25 Total: -1.00 -32.00 414.67 -9.20 -41.21 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: -9.03 Total: 14.94 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -0.93 Total: 1.89 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -0.63 Total: -55.82 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: 0.16 Total: -24.19 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.00 -9.20 -41.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266476852.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.348 kcal (2) G-P(sol) polarization free energy of solvation -32.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds