Wall clock time and date at job start Tue Mar 31 2020 20:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50693 * 120.00224 * 2 1 4 4 H 1.08995 * 109.47318 * 359.97438 * 3 2 1 5 5 C 1.53005 * 109.47090 * 239.99604 * 3 2 1 6 6 C 1.52999 * 109.46888 * 64.99784 * 5 3 2 7 7 C 1.53002 * 109.47183 * 119.99466 * 3 2 1 8 8 C 1.50701 * 109.47024 * 184.99873 * 7 3 2 9 9 O 1.21277 * 120.00213 * 359.97438 * 8 7 3 10 10 N 1.34774 * 119.99815 * 180.02562 * 8 7 3 11 11 C 1.46504 * 119.99903 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47142 * 173.45865 * 11 10 8 13 13 H 1.08999 * 110.33896 * 60.70684 * 12 11 10 14 14 C 1.54903 * 110.37336 * 183.08202 * 12 11 10 15 15 C 1.55144 * 101.65284 * 155.89745 * 14 12 11 16 16 C 1.54316 * 103.01803 * 324.34303 * 15 14 12 17 17 N 1.47437 * 107.23296 * 22.28881 * 16 15 14 18 18 C 1.46902 * 111.00458 * 123.25687 * 17 16 15 19 19 C 1.50699 * 109.47058 * 55.55466 * 18 17 16 20 20 O 1.21290 * 120.00437 * 0.02562 * 19 18 17 21 21 N 1.34779 * 119.99718 * 180.02562 * 19 18 17 22 22 C 1.37095 * 119.99997 * 180.02562 * 21 19 18 23 23 H 1.08006 * 120.00003 * 359.97438 * 22 21 19 24 24 C 1.38950 * 120.00177 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99889 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99869 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47393 * 90.00217 * 26 24 22 28 28 H 1.48503 * 109.46995 * 210.00067 * 26 24 22 29 29 H 1.48494 * 109.47549 * 329.99913 * 26 24 22 30 30 H 1.07996 * 120.00369 * 179.97438 * 1 2 3 31 31 H 1.08005 * 119.99233 * 0.02562 * 1 2 3 32 32 H 1.08005 * 119.99233 * 179.97438 * 2 1 3 33 33 H 1.08998 * 109.47006 * 185.00398 * 5 3 2 34 34 H 1.09004 * 109.46396 * 304.99956 * 5 3 2 35 35 H 1.09001 * 109.47074 * 300.00084 * 6 5 3 36 36 H 1.08995 * 109.46949 * 60.00482 * 6 5 3 37 37 H 1.09007 * 109.46865 * 180.02562 * 6 5 3 38 38 H 1.08999 * 109.47397 * 304.99956 * 7 3 2 39 39 H 1.08996 * 109.46999 * 64.99911 * 7 3 2 40 40 H 0.96997 * 120.00373 * 0.02562 * 10 8 7 41 41 H 1.09003 * 109.46958 * 293.45407 * 11 10 8 42 42 H 1.09002 * 109.47019 * 53.45773 * 11 10 8 43 43 H 1.08997 * 110.99169 * 273.98614 * 14 12 11 44 44 H 1.09002 * 110.99225 * 37.80581 * 14 12 11 45 45 H 1.09007 * 110.70765 * 205.96106 * 15 14 12 46 46 H 1.08999 * 110.70918 * 82.73114 * 15 14 12 47 47 H 1.08993 * 109.89415 * 262.87494 * 16 15 14 48 48 H 1.09003 * 110.02226 * 141.76426 * 16 15 14 49 49 H 1.08993 * 109.47363 * 175.56089 * 18 17 16 50 50 H 1.09004 * 109.46464 * 295.55749 * 18 17 16 51 51 H 0.96999 * 119.99964 * 359.97438 * 21 19 18 52 52 H 0.96999 * 119.99729 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3554 2.1335 -0.0005 5 6 2.9433 1.3860 -1.2492 6 6 2.0566 1.4305 -2.4953 7 6 2.9431 1.3861 1.2493 8 6 3.6020 2.7399 1.3127 9 8 3.3895 3.5591 0.4440 10 7 4.4283 3.0400 2.3343 11 6 5.0693 4.3559 2.3957 12 6 5.8176 4.4974 3.7227 13 1 6.5901 3.7329 3.8054 14 6 6.4393 5.9110 3.8432 15 6 6.5627 6.0689 5.3817 16 6 5.3070 5.3423 5.9076 17 7 4.8751 4.4014 4.8578 18 6 4.8121 3.0280 5.3751 19 6 3.9120 2.9870 6.5831 20 8 3.3753 4.0019 6.9743 21 7 3.7033 1.8225 7.2287 22 6 2.8840 1.7850 8.3273 23 1 2.4061 2.6888 8.6757 24 6 2.6684 0.5844 8.9927 25 7 3.2495 -0.5154 8.5686 26 14 1.5527 0.5336 10.4900 27 1 0.1583 0.2587 10.0593 28 1 2.0073 -0.5400 11.4098 29 1 1.6054 1.8414 11.1913 30 1 -0.5400 -0.9352 -0.0004 31 1 -0.5399 0.9354 -0.0004 32 1 1.8500 -0.9354 0.0004 33 1 3.5543 2.2876 -1.2055 34 1 3.5907 0.5102 -1.2950 35 1 1.4457 0.5288 -2.5389 36 1 1.4093 2.3062 -2.4495 37 1 2.6834 1.4877 -3.3853 38 1 2.3278 1.2395 2.1370 39 1 3.7084 0.6112 1.2058 40 1 4.5992 2.3845 3.0285 41 1 5.7731 4.4561 1.5693 42 1 4.3095 5.1340 2.3223 43 1 7.4191 5.9486 3.3671 44 1 5.7745 6.6669 3.4252 45 1 6.5452 7.1217 5.6637 46 1 7.4690 5.5860 5.7473 47 1 4.5159 6.0653 6.1060 48 1 5.5467 4.7956 6.8196 49 1 4.4160 2.3671 4.6042 50 1 5.8127 2.6995 5.6563 51 1 4.1322 1.0107 6.9157 52 1 3.0987 -1.3536 9.0328 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266476853.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:27 Heat of formation + Delta-G solvation = -60.316538 kcal Electronic energy + Delta-G solvation = -29972.781881 eV Core-core repulsion = 25972.234242 eV Total energy + Delta-G solvation = -4000.547639 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.13889 -39.28673 -37.66268 -36.77724 -34.53719 -33.98642 -31.99362 -31.86072 -31.21711 -30.95791 -29.46789 -26.80709 -25.60274 -24.39135 -23.64750 -21.90359 -21.38752 -20.36017 -20.00191 -19.66123 -19.15111 -17.90412 -17.07602 -16.48307 -16.02248 -15.57873 -15.41113 -15.20233 -14.82346 -14.70905 -14.57188 -14.22169 -13.98048 -13.87881 -13.80258 -13.36775 -13.05219 -12.85628 -12.65693 -12.50033 -12.16179 -12.07869 -11.93185 -11.74161 -11.50084 -11.33983 -11.26820 -11.18961 -11.15340 -11.01366 -10.88925 -10.79136 -10.66825 -10.56638 -10.43113 -10.26704 -9.65056 -9.54011 -9.39633 -8.95344 -8.43208 -8.02672 -7.99269 -6.47110 -3.87829 2.18887 2.73773 3.14025 3.23578 3.25943 3.28984 3.81601 3.93531 4.18010 4.55003 4.62036 4.64963 4.72090 4.96221 4.97237 5.00506 5.09864 5.16481 5.19558 5.20712 5.23729 5.29811 5.34856 5.47128 5.52779 5.56569 5.63228 5.66481 5.76072 5.77979 5.80784 5.85208 5.87029 5.92728 5.96400 6.01591 6.09432 6.21308 6.24389 6.28709 6.31253 6.50454 6.56791 6.57497 6.71498 7.21943 7.24223 7.50398 7.54990 8.00156 8.30536 8.55153 9.12622 9.47471 9.98765 10.70479 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007703 B = 0.003397 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3633.971879 B = 8239.710381 C =11402.080555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.146 4.146 3 C -0.044 4.044 4 H 0.082 0.918 5 C -0.121 4.121 6 C -0.147 4.147 7 C -0.138 4.138 8 C 0.515 3.485 9 O -0.543 6.543 10 N -0.725 5.725 11 C 0.138 3.862 12 C 0.054 3.946 13 H 0.059 0.941 14 C -0.117 4.117 15 C -0.147 4.147 16 C 0.063 3.937 17 N -0.502 5.502 18 C 0.040 3.960 19 C 0.441 3.559 20 O -0.576 6.576 21 N -0.562 5.562 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.024 3.976 25 N -0.901 5.901 26 Si 0.929 3.071 27 H -0.277 1.277 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.398 0.602 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.063 0.937 47 H 0.083 0.917 48 H 0.060 0.940 49 H 0.081 0.919 50 H 0.049 0.951 51 H 0.391 0.609 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.690 2.241 -16.130 17.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.164 4.164 3 C -0.063 4.063 4 H 0.100 0.900 5 C -0.158 4.158 6 C -0.205 4.205 7 C -0.178 4.178 8 C 0.302 3.698 9 O -0.421 6.421 10 N -0.379 5.379 11 C 0.014 3.986 12 C -0.055 4.055 13 H 0.077 0.923 14 C -0.156 4.156 15 C -0.186 4.186 16 C -0.064 4.064 17 N -0.226 5.226 18 C -0.092 4.092 19 C 0.226 3.774 20 O -0.460 6.460 21 N -0.199 5.199 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.178 4.178 25 N -0.542 5.542 26 Si 0.756 3.244 27 H -0.203 1.203 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.126 0.874 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.236 0.764 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.092 0.908 46 H 0.082 0.918 47 H 0.101 0.899 48 H 0.079 0.921 49 H 0.099 0.901 50 H 0.067 0.933 51 H 0.224 0.776 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.663 3.446 -16.551 17.537 hybrid contribution 0.565 -1.425 1.346 2.040 sum 5.227 2.022 -15.205 16.205 Atomic orbital electron populations 1.23864 0.95979 1.01809 1.01134 1.22919 0.95946 0.97982 0.99584 1.20136 0.96876 0.95747 0.93547 0.89983 1.21654 0.98057 1.02684 0.93430 1.21727 0.99776 1.01607 0.97358 1.21728 1.00373 0.94991 1.00736 1.20637 0.78493 0.89570 0.81143 1.90646 1.62256 1.50581 1.38634 1.46225 1.47894 1.17106 1.26658 1.21342 0.96589 0.85302 0.95405 1.22899 0.92943 0.97977 0.91670 0.92318 1.22625 1.00567 0.95689 0.96697 1.22916 0.99025 1.01494 0.95146 1.22673 0.95029 0.95304 0.93399 1.63265 1.47345 1.04836 1.07191 1.22178 0.98787 0.90933 0.97314 1.19649 0.86714 0.84867 0.86185 1.90541 1.53244 1.33645 1.68547 1.41851 1.42911 1.08381 1.26754 1.19688 1.22956 0.96136 1.04060 0.87920 1.25250 0.98241 0.94798 0.99531 1.69603 1.43696 0.99506 1.41423 0.85870 0.79793 0.78086 0.80635 1.20344 1.20919 1.19428 0.88562 0.88592 0.87415 0.89842 0.92710 0.92969 0.92827 0.93226 0.88398 0.88859 0.76419 0.91713 0.90445 0.90841 0.90233 0.90770 0.91820 0.89877 0.92129 0.90126 0.93331 0.77560 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.84 14.32 29.01 0.42 -1.42 16 2 C -0.15 -1.43 7.75 -36.03 -0.28 -1.71 16 3 C -0.04 -0.48 1.80 -91.77 -0.17 -0.65 16 4 H 0.08 1.03 7.60 -51.93 -0.39 0.63 16 5 C -0.12 -1.27 5.18 -26.73 -0.14 -1.41 16 6 C -0.15 -1.42 9.73 37.16 0.36 -1.06 16 7 C -0.14 -1.50 5.16 -27.88 -0.14 -1.64 16 8 C 0.51 6.80 7.51 -10.99 -0.08 6.72 16 9 O -0.54 -8.68 13.97 5.56 0.08 -8.60 16 10 N -0.72 -8.92 5.34 -60.29 -0.32 -9.24 16 11 C 0.14 1.67 5.39 -4.04 -0.02 1.65 16 12 C 0.05 0.64 2.68 -66.19 -0.18 0.46 16 13 H 0.06 0.64 7.72 -51.93 -0.40 0.24 16 14 C -0.12 -1.21 6.49 -24.59 -0.16 -1.37 16 15 C -0.15 -1.71 6.94 -24.91 -0.17 -1.88 16 16 C 0.06 1.01 5.14 -2.84 -0.01 0.99 16 17 N -0.50 -7.84 4.70 -224.82 -1.06 -8.90 16 18 C 0.04 0.66 5.03 -4.98 -0.03 0.64 16 19 C 0.44 9.92 7.10 -10.98 -0.08 9.84 16 20 O -0.58 -14.95 13.97 5.55 0.08 -14.88 16 21 N -0.56 -13.65 5.29 -10.96 -0.06 -13.71 16 22 C -0.30 -8.10 9.68 -14.93 -0.14 -8.24 16 23 H 0.10 2.94 7.16 -52.48 -0.38 2.56 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -23.79 13.05 55.50 0.72 -23.07 16 26 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 29 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 30 H 0.10 0.81 8.06 -52.49 -0.42 0.39 16 31 H 0.10 0.93 7.83 -52.48 -0.41 0.52 16 32 H 0.11 0.94 8.06 -52.48 -0.42 0.51 16 33 H 0.08 1.04 5.88 -51.93 -0.31 0.74 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.47 7.38 -51.93 -0.38 0.09 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.40 4.54 5.49 -40.82 -0.22 4.31 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 1.10 8.11 -51.93 -0.42 0.67 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.83 8.06 -51.93 -0.42 0.41 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.08 1.48 8.00 -51.93 -0.42 1.07 16 48 H 0.06 1.10 6.61 -51.93 -0.34 0.76 16 49 H 0.08 1.18 5.35 -51.93 -0.28 0.90 16 50 H 0.05 0.73 8.00 -51.93 -0.42 0.31 16 51 H 0.39 9.03 7.90 -40.82 -0.32 8.70 16 52 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 LS Contribution 411.38 15.07 6.20 6.20 Total: -1.00 -31.32 411.38 -9.20 -40.52 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: -8.89 Total: 14.58 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -0.92 Total: 1.45 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.71 Total: -54.92 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: 0.16 Total: -23.47 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.32 -9.20 -40.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266476853.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.795 kcal (2) G-P(sol) polarization free energy of solvation -31.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds