Wall clock time and date at job start Tue Mar 31 2020 20:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50693 * 120.00224 * 2 1 4 4 H 1.08995 * 109.47318 * 359.97438 * 3 2 1 5 5 C 1.53005 * 109.47090 * 239.99604 * 3 2 1 6 6 C 1.52999 * 109.46888 * 64.99784 * 5 3 2 7 7 C 1.53002 * 109.47183 * 119.99466 * 3 2 1 8 8 C 1.50701 * 109.47024 * 184.99873 * 7 3 2 9 9 O 1.21277 * 120.00213 * 359.97438 * 8 7 3 10 10 N 1.34774 * 119.99815 * 180.02562 * 8 7 3 11 11 C 1.46504 * 119.99903 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47142 * 173.45865 * 11 10 8 13 13 H 1.08999 * 110.33896 * 60.70684 * 12 11 10 14 14 C 1.54903 * 110.37336 * 183.08202 * 12 11 10 15 15 C 1.55144 * 101.65284 * 155.89745 * 14 12 11 16 16 C 1.54316 * 103.01803 * 324.34303 * 15 14 12 17 17 N 1.47437 * 107.23296 * 22.28881 * 16 15 14 18 18 C 1.46902 * 111.00458 * 123.25687 * 17 16 15 19 19 C 1.50699 * 109.47058 * 55.55466 * 18 17 16 20 20 O 1.21290 * 120.00437 * 0.02562 * 19 18 17 21 21 N 1.34779 * 119.99718 * 180.02562 * 19 18 17 22 22 C 1.37095 * 119.99997 * 180.02562 * 21 19 18 23 23 H 1.08006 * 120.00003 * 359.97438 * 22 21 19 24 24 C 1.38950 * 120.00177 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99889 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99869 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47393 * 90.00217 * 26 24 22 28 28 H 1.48503 * 109.46995 * 210.00067 * 26 24 22 29 29 H 1.48494 * 109.47549 * 329.99913 * 26 24 22 30 30 H 1.07996 * 120.00369 * 179.97438 * 1 2 3 31 31 H 1.08005 * 119.99233 * 0.02562 * 1 2 3 32 32 H 1.08005 * 119.99233 * 179.97438 * 2 1 3 33 33 H 1.08998 * 109.47006 * 185.00398 * 5 3 2 34 34 H 1.09004 * 109.46396 * 304.99956 * 5 3 2 35 35 H 1.09001 * 109.47074 * 300.00084 * 6 5 3 36 36 H 1.08995 * 109.46949 * 60.00482 * 6 5 3 37 37 H 1.09007 * 109.46865 * 180.02562 * 6 5 3 38 38 H 1.08999 * 109.47397 * 304.99956 * 7 3 2 39 39 H 1.08996 * 109.46999 * 64.99911 * 7 3 2 40 40 H 0.96997 * 120.00373 * 0.02562 * 10 8 7 41 41 H 1.09003 * 109.46958 * 293.45407 * 11 10 8 42 42 H 1.09002 * 109.47019 * 53.45773 * 11 10 8 43 43 H 1.08997 * 110.99169 * 273.98614 * 14 12 11 44 44 H 1.09002 * 110.99225 * 37.80581 * 14 12 11 45 45 H 1.09007 * 110.70765 * 205.96106 * 15 14 12 46 46 H 1.08999 * 110.70918 * 82.73114 * 15 14 12 47 47 H 1.08993 * 109.89415 * 262.87494 * 16 15 14 48 48 H 1.09003 * 110.02226 * 141.76426 * 16 15 14 49 49 H 1.08993 * 109.47363 * 175.56089 * 18 17 16 50 50 H 1.09004 * 109.46464 * 295.55749 * 18 17 16 51 51 H 0.96999 * 119.99964 * 359.97438 * 21 19 18 52 52 H 0.96999 * 119.99729 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3554 2.1335 -0.0005 5 6 2.9433 1.3860 -1.2492 6 6 2.0566 1.4305 -2.4953 7 6 2.9431 1.3861 1.2493 8 6 3.6020 2.7399 1.3127 9 8 3.3895 3.5591 0.4440 10 7 4.4283 3.0400 2.3343 11 6 5.0693 4.3559 2.3957 12 6 5.8176 4.4974 3.7227 13 1 6.5901 3.7329 3.8054 14 6 6.4393 5.9110 3.8432 15 6 6.5627 6.0689 5.3817 16 6 5.3070 5.3423 5.9076 17 7 4.8751 4.4014 4.8578 18 6 4.8121 3.0280 5.3751 19 6 3.9120 2.9870 6.5831 20 8 3.3753 4.0019 6.9743 21 7 3.7033 1.8225 7.2287 22 6 2.8840 1.7850 8.3273 23 1 2.4061 2.6888 8.6757 24 6 2.6684 0.5844 8.9927 25 7 3.2495 -0.5154 8.5686 26 14 1.5527 0.5336 10.4900 27 1 0.1583 0.2587 10.0593 28 1 2.0073 -0.5400 11.4098 29 1 1.6054 1.8414 11.1913 30 1 -0.5400 -0.9352 -0.0004 31 1 -0.5399 0.9354 -0.0004 32 1 1.8500 -0.9354 0.0004 33 1 3.5543 2.2876 -1.2055 34 1 3.5907 0.5102 -1.2950 35 1 1.4457 0.5288 -2.5389 36 1 1.4093 2.3062 -2.4495 37 1 2.6834 1.4877 -3.3853 38 1 2.3278 1.2395 2.1370 39 1 3.7084 0.6112 1.2058 40 1 4.5992 2.3845 3.0285 41 1 5.7731 4.4561 1.5693 42 1 4.3095 5.1340 2.3223 43 1 7.4191 5.9486 3.3671 44 1 5.7745 6.6669 3.4252 45 1 6.5452 7.1217 5.6637 46 1 7.4690 5.5860 5.7473 47 1 4.5159 6.0653 6.1060 48 1 5.5467 4.7956 6.8196 49 1 4.4160 2.3671 4.6042 50 1 5.8127 2.6995 5.6563 51 1 4.1322 1.0107 6.9157 52 1 3.0987 -1.3536 9.0328 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266476853.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:26 Heat of formation + Delta-G solvation = -81.721119 kcal Electronic energy + Delta-G solvation = -29973.710053 eV Core-core repulsion = 25972.234242 eV Total energy + Delta-G solvation = -4001.475812 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.25973 -40.56253 -39.22418 -37.66441 -36.00777 -35.52646 -33.45040 -32.96076 -32.63744 -31.90882 -30.42945 -28.32204 -26.68533 -25.96501 -24.70178 -22.76443 -22.42596 -21.48307 -21.07148 -20.79296 -20.47788 -19.84138 -18.08299 -17.72095 -17.41728 -16.83738 -16.52594 -16.41049 -16.30642 -15.75751 -15.66606 -15.58507 -15.55365 -14.89564 -14.83484 -14.52919 -14.30989 -13.86361 -13.82039 -13.56315 -13.50943 -13.42112 -13.06597 -12.94751 -12.83860 -12.77718 -12.41905 -12.27971 -12.21050 -12.14120 -12.05763 -12.00301 -11.96665 -11.62771 -11.57865 -11.52122 -11.45888 -10.66121 -10.27985 -10.18863 -9.99846 -9.96754 -9.24363 -8.46940 -5.94752 1.36765 1.41501 1.42262 1.53039 1.71105 2.02880 2.27761 2.31231 2.76568 3.19831 3.26177 3.67712 3.73854 3.78181 3.82445 3.99915 4.12585 4.13352 4.24383 4.26216 4.30333 4.40372 4.42956 4.44679 4.49126 4.55628 4.62571 4.65067 4.70605 4.80258 4.87680 4.95120 4.96720 5.02904 5.06849 5.10669 5.12125 5.21086 5.23151 5.38220 5.41245 5.42664 5.47090 5.55281 5.77904 5.89279 5.95578 6.02838 6.14901 6.56004 6.60600 7.13249 7.29829 7.55739 8.11836 8.70195 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007703 B = 0.003397 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3633.971879 B = 8239.710381 C =11402.080555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.147 4.147 3 C -0.043 4.043 4 H 0.056 0.944 5 C -0.117 4.117 6 C -0.145 4.145 7 C -0.135 4.135 8 C 0.510 3.490 9 O -0.575 6.575 10 N -0.722 5.722 11 C 0.141 3.859 12 C 0.058 3.942 13 H 0.081 0.919 14 C -0.109 4.109 15 C -0.136 4.136 16 C 0.064 3.936 17 N -0.522 5.522 18 C 0.053 3.947 19 C 0.438 3.562 20 O -0.616 6.616 21 N -0.571 5.571 22 C -0.331 4.331 23 H 0.076 0.924 24 C -0.009 4.009 25 N -0.917 5.917 26 Si 0.987 3.013 27 H -0.272 1.272 28 H -0.270 1.270 29 H -0.275 1.275 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.125 0.875 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.040 0.960 37 H 0.058 0.942 38 H 0.096 0.904 39 H 0.120 0.880 40 H 0.404 0.596 41 H 0.083 0.917 42 H 0.052 0.948 43 H 0.106 0.894 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.050 0.950 48 H 0.031 0.969 49 H 0.104 0.896 50 H 0.073 0.927 51 H 0.397 0.603 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.283 0.927 -17.050 18.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.165 4.165 3 C -0.062 4.062 4 H 0.075 0.925 5 C -0.154 4.154 6 C -0.203 4.203 7 C -0.175 4.175 8 C 0.298 3.702 9 O -0.455 6.455 10 N -0.375 5.375 11 C 0.017 3.983 12 C -0.050 4.050 13 H 0.099 0.901 14 C -0.148 4.148 15 C -0.174 4.174 16 C -0.063 4.063 17 N -0.248 5.248 18 C -0.078 4.078 19 C 0.226 3.774 20 O -0.502 6.502 21 N -0.208 5.208 22 C -0.461 4.461 23 H 0.094 0.906 24 C -0.209 4.209 25 N -0.557 5.557 26 Si 0.812 3.188 27 H -0.198 1.198 28 H -0.195 1.195 29 H -0.200 1.200 30 H 0.128 0.872 31 H 0.106 0.894 32 H 0.143 0.857 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.138 0.862 40 H 0.242 0.758 41 H 0.101 0.899 42 H 0.071 0.929 43 H 0.125 0.875 44 H 0.095 0.905 45 H 0.103 0.897 46 H 0.096 0.904 47 H 0.069 0.931 48 H 0.049 0.951 49 H 0.121 0.879 50 H 0.091 0.909 51 H 0.231 0.769 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.280 2.113 -17.478 18.692 hybrid contribution 0.049 -0.951 1.610 1.871 sum 6.329 1.162 -15.868 17.123 Atomic orbital electron populations 1.23994 0.96189 1.02169 1.00972 1.22966 0.95967 0.97903 0.99696 1.20081 0.96585 0.95611 0.93896 0.92506 1.21596 0.98014 1.02306 0.93531 1.21708 0.99715 1.01389 0.97446 1.21760 1.00854 0.94307 1.00540 1.21065 0.78264 0.90123 0.80749 1.90636 1.63323 1.51704 1.39872 1.46232 1.47596 1.17252 1.26450 1.21332 0.96240 0.84524 0.96243 1.22992 0.92569 0.99822 0.89614 0.90077 1.22651 1.02075 0.94372 0.95666 1.22841 0.97004 1.01636 0.95968 1.22508 0.96196 0.94832 0.92803 1.63183 1.49557 1.04045 1.07974 1.22050 0.98452 0.92285 0.95032 1.20706 0.86179 0.83585 0.86979 1.90519 1.54781 1.34940 1.69934 1.41885 1.43095 1.09214 1.26632 1.19593 1.24718 0.95780 1.05998 0.90631 1.25939 0.99144 0.94165 1.01648 1.69650 1.44065 0.99800 1.42227 0.85008 0.78228 0.77979 0.77627 1.19779 1.19468 1.20016 0.87152 0.89398 0.85678 0.91934 0.91102 0.92226 0.94047 0.92303 0.88616 0.86187 0.75807 0.89860 0.92932 0.87536 0.90543 0.89694 0.90380 0.93125 0.95081 0.87876 0.90884 0.76925 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.58 14.32 67.77 0.97 -2.61 16 2 C -0.15 -2.66 7.75 25.64 0.20 -2.46 16 3 C -0.04 -0.90 1.80 -11.54 -0.02 -0.92 16 4 H 0.06 1.47 7.60 -2.39 -0.02 1.45 16 5 C -0.12 -2.35 5.18 30.60 0.16 -2.19 16 6 C -0.15 -2.69 9.73 71.98 0.70 -1.99 16 7 C -0.13 -2.75 5.16 29.85 0.15 -2.60 16 8 C 0.51 13.11 7.51 87.66 0.66 13.77 16 9 O -0.58 -18.47 13.97 -3.02 -0.04 -18.52 16 10 N -0.72 -16.65 5.34 -463.05 -2.47 -19.13 16 11 C 0.14 3.18 5.39 86.38 0.47 3.65 16 12 C 0.06 1.23 2.68 45.38 0.12 1.36 16 13 H 0.08 1.44 7.72 -2.39 -0.02 1.42 16 14 C -0.11 -1.94 6.49 31.98 0.21 -1.73 16 15 C -0.14 -2.89 6.94 31.78 0.22 -2.67 16 16 C 0.06 2.07 5.14 86.65 0.45 2.52 16 17 N -0.52 -15.96 4.70 -865.21 -4.07 -20.02 16 18 C 0.05 1.71 5.03 85.56 0.43 2.14 16 19 C 0.44 20.12 7.10 87.66 0.62 20.74 16 20 O -0.62 -33.36 13.97 -3.06 -0.04 -33.40 16 21 N -0.57 -28.19 5.29 -306.98 -1.62 -29.81 16 22 C -0.33 -18.41 9.68 84.04 0.81 -17.60 16 23 H 0.08 4.54 7.16 -2.91 -0.02 4.51 16 24 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 25 N -0.92 -47.91 13.05 21.66 0.28 -47.62 16 26 Si 0.99 42.33 29.55 68.60 2.03 44.36 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 28 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 29 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 30 H 0.11 1.68 8.06 -2.91 -0.02 1.66 16 31 H 0.09 1.72 7.83 -2.91 -0.02 1.69 16 32 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 33 H 0.06 1.54 5.88 -2.39 -0.01 1.53 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.01 7.38 -2.39 -0.02 0.99 16 36 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.12 1.79 8.14 -2.39 -0.02 1.78 16 40 H 0.40 8.30 5.49 -92.71 -0.51 7.79 16 41 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.05 1.47 8.11 -2.39 -0.02 1.45 16 43 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.08 1.43 8.06 -2.39 -0.02 1.41 16 45 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 46 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.05 1.91 8.00 -2.39 -0.02 1.89 16 48 H 0.03 1.15 6.61 -2.39 -0.02 1.14 16 49 H 0.10 2.84 5.35 -2.39 -0.01 2.82 16 50 H 0.07 2.02 8.00 -2.39 -0.02 2.00 16 51 H 0.40 18.35 7.90 -92.71 -0.73 17.62 16 52 H 0.28 13.61 8.31 -92.71 -0.77 12.84 16 Total: -1.00 -70.58 411.38 0.35 -70.24 By element: Atomic # 1 Polarization: 44.83 SS G_CDS: -0.33 Total: 44.50 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 6.61 Total: 9.40 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -7.88 Total: -116.58 kcal Atomic # 8 Polarization: -51.83 SS G_CDS: -0.08 Total: -51.92 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -70.58 0.35 -70.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266476853.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.486 kcal (2) G-P(sol) polarization free energy of solvation -70.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds