Wall clock time and date at job start Tue Mar 31 2020 19:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47153 * 2 1 4 4 H 1.09000 * 115.54752 * 29.33710 * 3 2 1 5 5 C 1.53073 * 117.51445 * 243.61014 * 3 2 1 6 6 C 1.52998 * 59.98682 * 252.52548 * 5 3 2 7 7 H 1.08994 * 117.49890 * 107.50178 * 6 5 3 8 8 C 1.50707 * 117.49646 * 252.50357 * 6 5 3 9 9 O 1.21276 * 120.00310 * 68.74448 * 8 6 5 10 10 N 1.34774 * 119.99616 * 248.74243 * 8 6 5 11 11 C 1.46500 * 119.99950 * 179.97438 * 10 8 6 12 12 C 1.53003 * 109.47226 * 184.98387 * 11 10 8 13 13 H 1.08999 * 109.45169 * 185.73683 * 12 11 10 14 14 C 1.53031 * 109.46044 * 65.76323 * 12 11 10 15 15 C 1.53115 * 109.28124 * 180.80231 * 14 12 11 16 16 C 1.53126 * 109.15981 * 57.65546 * 15 14 12 17 17 C 1.53041 * 109.27616 * 302.35033 * 16 15 14 18 18 N 1.46847 * 109.52693 * 59.17573 * 17 16 15 19 19 C 1.46895 * 111.00133 * 174.16269 * 18 17 16 20 20 C 1.50695 * 109.47228 * 63.76245 * 19 18 17 21 21 O 1.21289 * 119.99991 * 0.02562 * 20 19 18 22 22 N 1.34781 * 120.00039 * 180.02562 * 20 19 18 23 23 C 1.37092 * 120.00236 * 180.02562 * 22 20 19 24 24 H 1.08002 * 120.00243 * 359.97438 * 23 22 20 25 25 C 1.38950 * 120.00145 * 180.02562 * 23 22 20 26 26 N 1.31412 * 120.00026 * 180.02562 * 25 23 22 27 27 Si 1.86794 * 120.00111 * 359.97438 * 25 23 22 28 28 H 1.48508 * 109.47082 * 270.00243 * 27 25 23 29 29 H 1.48504 * 109.47008 * 29.99794 * 27 25 23 30 30 H 1.48497 * 109.47186 * 150.00186 * 27 25 23 31 31 H 1.09007 * 109.47057 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46739 * 299.99579 * 1 2 3 33 33 H 1.08987 * 109.47416 * 59.99691 * 1 2 3 34 34 H 1.09005 * 109.47124 * 240.00135 * 2 1 3 35 35 H 1.09000 * 109.47668 * 120.00145 * 2 1 3 36 36 H 1.08997 * 117.51132 * 145.04516 * 5 3 2 37 37 H 1.09001 * 117.49396 * 0.02562 * 5 3 2 38 38 H 0.96998 * 120.00210 * 0.02562 * 10 8 6 39 39 H 1.08998 * 109.46884 * 64.98837 * 11 10 8 40 40 H 1.09002 * 109.47366 * 304.98851 * 11 10 8 41 41 H 1.09010 * 109.50320 * 60.86553 * 14 12 11 42 42 H 1.08999 * 109.53720 * 300.76975 * 14 12 11 43 43 H 1.09004 * 109.52476 * 297.75816 * 15 14 12 44 44 H 1.09003 * 109.58163 * 177.59185 * 15 14 12 45 45 H 1.09000 * 109.50380 * 182.40852 * 16 15 14 46 46 H 1.09000 * 109.50283 * 62.28666 * 16 15 14 47 47 H 1.09005 * 109.46221 * 299.16070 * 17 16 15 48 48 H 1.09003 * 109.46007 * 179.19373 * 17 16 15 49 49 H 1.09007 * 109.46742 * 303.76368 * 19 18 17 50 50 H 1.09000 * 109.47011 * 183.77042 * 19 18 17 51 51 H 0.97004 * 119.99796 * 359.97438 * 22 20 19 52 52 H 0.97001 * 120.00207 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1715 0.4818 5 6 2.8446 1.9081 -1.2161 6 6 3.5502 1.6578 0.1182 7 1 4.1803 0.7719 0.1959 8 6 4.0229 2.8617 0.8918 9 8 3.2159 3.6152 1.3936 10 7 5.3424 3.1008 1.0260 11 6 5.8020 4.2714 1.7776 12 6 7.3247 4.3786 1.6737 13 1 7.6762 5.1874 2.3143 14 6 7.7176 4.6692 0.2236 15 6 9.2428 4.7558 0.1206 16 6 9.8555 3.4440 0.6194 17 6 9.4005 3.1889 2.0582 18 7 7.9347 3.1138 2.1034 19 6 7.4681 2.7327 3.4432 20 6 7.8509 3.8037 4.4318 21 8 8.4526 4.7878 4.0571 22 7 7.5245 3.6679 5.7325 23 6 7.8722 4.6425 6.6318 24 1 8.4080 5.5188 6.2982 25 6 7.5362 4.5022 7.9728 26 7 7.8691 5.4366 8.8347 27 14 6.6100 2.9862 8.5500 28 1 5.1487 3.2372 8.4665 29 1 6.9640 1.8312 7.6862 30 1 6.9810 2.6850 9.9560 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8898 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 2.7224 2.9433 -1.5344 37 1 3.0101 1.1866 -2.0162 38 1 5.9878 2.4983 0.6244 39 1 5.5157 4.1665 2.8241 40 1 5.3454 5.1708 1.3644 41 1 7.2775 5.6159 -0.0900 42 1 7.3542 3.8681 -0.4201 43 1 9.6030 5.5821 0.7335 44 1 9.5301 4.9202 -0.9180 45 1 10.9427 3.5153 0.5887 46 1 9.5259 2.6231 -0.0175 47 1 9.7423 4.0033 2.6970 48 1 9.8235 2.2484 2.4114 49 1 7.9293 1.7886 3.7335 50 1 6.3841 2.6192 3.4318 51 1 7.0429 2.8810 6.0321 52 1 7.6348 5.3386 9.7709 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266856528.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:42 Heat of formation + Delta-G solvation = -54.029022 kcal Electronic energy + Delta-G solvation = -30527.944647 eV Core-core repulsion = 26527.669655 eV Total energy + Delta-G solvation = -4000.274992 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.34814 -39.56641 -37.68537 -37.06461 -34.61166 -34.17626 -33.01520 -32.32035 -31.74875 -30.97941 -27.71820 -26.64054 -24.59424 -24.25028 -23.67418 -22.71944 -21.27227 -20.78900 -20.10579 -19.57312 -19.31162 -18.18912 -17.33844 -16.12199 -16.00262 -15.67321 -15.38388 -14.98268 -14.89934 -14.79701 -14.51051 -14.24610 -14.08648 -13.73975 -13.70349 -13.32217 -13.12928 -12.81604 -12.75567 -12.61904 -12.36501 -12.29009 -12.12206 -11.81567 -11.74596 -11.57995 -11.44032 -11.29293 -11.27398 -10.72916 -10.64699 -10.56442 -10.48294 -10.25780 -10.21363 -10.09682 -10.06103 -9.74469 -9.54327 -9.37758 -8.87327 -8.23934 -7.58243 -6.38432 -3.89607 2.54518 2.98778 3.04335 3.12413 3.21587 3.60815 3.67055 4.04996 4.12775 4.44736 4.56360 4.60976 4.63846 4.85558 4.92624 4.94914 5.04370 5.07101 5.09161 5.15393 5.19362 5.34604 5.38284 5.41283 5.54284 5.62099 5.66255 5.69151 5.73836 5.76298 5.81569 5.82393 5.83913 5.88531 5.90295 5.95009 6.04270 6.09307 6.14815 6.16453 6.25659 6.32156 6.43920 6.58360 6.69369 7.21658 7.31485 7.49152 7.68575 8.07419 8.35810 8.49907 8.86915 9.34809 9.72091 10.74236 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008572 B = 0.003531 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3265.551038 B = 7927.835640 C =10418.439671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.119 4.119 4 H 0.117 0.883 5 C -0.150 4.150 6 C -0.188 4.188 7 H 0.122 0.878 8 C 0.536 3.464 9 O -0.547 6.547 10 N -0.709 5.709 11 C 0.126 3.874 12 C 0.052 3.948 13 H 0.104 0.896 14 C -0.105 4.105 15 C -0.120 4.120 16 C -0.111 4.111 17 C 0.039 3.961 18 N -0.508 5.508 19 C 0.033 3.967 20 C 0.415 3.585 21 O -0.577 6.577 22 N -0.581 5.581 23 C -0.308 4.308 24 H 0.119 0.881 25 C 0.044 3.956 26 N -0.877 5.877 27 Si 0.879 3.121 28 H -0.269 1.269 29 H -0.269 1.269 30 H -0.276 1.276 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.408 0.592 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.074 0.926 48 H 0.064 0.936 49 H 0.089 0.911 50 H 0.091 0.909 51 H 0.371 0.629 52 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.353 -11.951 -20.542 24.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.138 4.138 4 H 0.135 0.865 5 C -0.187 4.187 6 C -0.209 4.209 7 H 0.140 0.860 8 C 0.322 3.678 9 O -0.425 6.425 10 N -0.361 5.361 11 C 0.002 3.998 12 C -0.056 4.056 13 H 0.121 0.879 14 C -0.143 4.143 15 C -0.157 4.157 16 C -0.149 4.149 17 C -0.088 4.088 18 N -0.231 5.231 19 C -0.099 4.099 20 C 0.201 3.799 21 O -0.462 6.462 22 N -0.219 5.219 23 C -0.436 4.436 24 H 0.137 0.863 25 C -0.160 4.160 26 N -0.516 5.516 27 Si 0.705 3.295 28 H -0.194 1.194 29 H -0.194 1.194 30 H -0.201 1.201 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.244 0.756 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.092 0.908 48 H 0.083 0.917 49 H 0.107 0.893 50 H 0.110 0.890 51 H 0.204 0.796 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.647 -11.014 -20.516 24.216 hybrid contribution -0.016 -0.840 1.255 1.510 sum -6.664 -11.854 -19.261 23.577 Atomic orbital electron populations 1.21740 0.95241 1.01569 1.02168 1.21151 0.96237 0.93716 1.02105 1.22478 0.91629 0.98620 1.01061 0.86479 1.23086 1.02322 1.02996 0.90325 1.22305 0.97573 0.99163 1.01849 0.85998 1.19665 0.82539 0.85551 0.80073 1.90701 1.54140 1.48837 1.48836 1.45882 1.06555 1.28617 1.55068 1.21482 0.93674 0.88142 0.96513 1.22259 0.91948 0.94249 0.97155 0.87877 1.21561 0.95944 1.01095 0.95713 1.21550 0.95492 0.98233 1.00456 1.21536 0.99415 0.97466 0.96475 1.22277 0.87331 1.02289 0.96924 1.62413 1.07881 1.30806 1.22047 1.22166 1.01841 0.97855 0.88048 1.20975 0.85619 0.89812 0.83495 1.90430 1.45217 1.32815 1.77746 1.42411 1.51163 1.20644 1.07684 1.19438 1.35166 1.01370 0.87673 0.86301 1.25074 0.97610 0.97615 0.95724 1.69622 1.45472 1.33070 1.03469 0.86683 0.80853 0.82584 0.79393 1.19450 1.19435 1.20069 0.92684 0.92445 0.92577 0.91739 0.91379 0.88418 0.87976 0.75630 0.91492 0.91155 0.91891 0.91912 0.91799 0.92439 0.92042 0.91963 0.90794 0.91733 0.89287 0.89045 0.79622 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.87 37.16 0.37 -0.67 16 2 C -0.09 -0.70 6.22 -26.73 -0.17 -0.87 16 3 C -0.12 -1.12 5.25 -90.58 -0.48 -1.60 16 4 H 0.12 1.35 7.60 -51.93 -0.39 0.95 16 5 C -0.15 -1.24 9.88 -26.69 -0.26 -1.50 16 6 C -0.19 -1.84 5.91 -91.77 -0.54 -2.38 16 7 H 0.12 0.97 8.14 -51.93 -0.42 0.54 16 8 C 0.54 7.20 7.61 -10.98 -0.08 7.11 16 9 O -0.55 -9.67 16.25 5.56 0.09 -9.58 16 10 N -0.71 -8.69 4.98 -60.29 -0.30 -8.99 16 11 C 0.13 1.85 4.55 -4.04 -0.02 1.83 16 12 C 0.05 0.76 1.66 -67.72 -0.11 0.65 16 13 H 0.10 1.93 5.54 -51.93 -0.29 1.65 16 14 C -0.11 -1.26 5.26 -26.66 -0.14 -1.40 16 15 C -0.12 -1.40 6.00 -26.61 -0.16 -1.56 16 16 C -0.11 -1.29 6.09 -26.64 -0.16 -1.46 16 17 C 0.04 0.57 5.06 -3.83 -0.02 0.55 16 18 N -0.51 -7.18 4.03 -228.12 -0.92 -8.10 16 19 C 0.03 0.52 5.33 -4.98 -0.03 0.49 16 20 C 0.41 8.84 7.14 -10.99 -0.08 8.76 16 21 O -0.58 -13.98 11.19 5.55 0.06 -13.91 16 22 N -0.58 -13.53 5.09 -10.97 -0.06 -13.58 16 23 C -0.31 -8.54 10.16 -14.94 -0.15 -8.69 16 24 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 25 C 0.04 1.18 5.50 -17.47 -0.10 1.09 16 26 N -0.88 -25.46 13.96 55.50 0.77 -24.69 16 27 Si 0.88 19.41 27.74 -169.99 -4.71 14.69 16 28 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 29 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 30 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.37 8.14 -51.94 -0.42 -0.05 16 34 H 0.06 0.40 7.88 -51.93 -0.41 -0.01 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.10 0.64 8.03 -51.93 -0.42 0.22 16 38 H 0.41 4.28 7.44 -40.82 -0.30 3.98 16 39 H 0.07 1.16 6.62 -51.93 -0.34 0.81 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 42 H 0.06 0.68 7.33 -51.93 -0.38 0.30 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.07 1.36 5.81 -51.93 -0.30 1.05 16 48 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 49 H 0.09 1.26 8.10 -51.93 -0.42 0.84 16 50 H 0.09 1.39 6.23 -51.93 -0.32 1.07 16 51 H 0.37 7.74 5.76 -40.82 -0.24 7.50 16 52 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 403.31 15.07 6.08 6.08 Total: -1.00 -31.76 403.31 -9.98 -41.74 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: -8.87 Total: 15.97 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -2.13 Total: 0.37 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: -0.50 Total: -55.36 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: 0.15 Total: -23.49 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.71 Total: 14.69 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.76 -9.98 -41.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266856528.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.291 kcal (2) G-P(sol) polarization free energy of solvation -31.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds